Wall clock time and date at job start Mon Mar 30 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 113.99695 * 2 1 4 4 C 1.53007 * 109.46811 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47044 * 65.00109 * 4 3 2 6 6 C 1.36810 * 119.99762 * 266.98578 * 5 4 3 7 7 H 1.08006 * 120.00134 * 141.56468 * 6 5 4 8 8 C 1.39073 * 120.00569 * 321.56645 * 6 5 4 9 9 N 1.31359 * 119.99578 * 342.15796 * 8 6 5 10 10 Si 1.86803 * 120.00710 * 162.15687 * 8 6 5 11 11 H 1.48496 * 109.46860 * 89.99948 * 10 8 6 12 12 H 1.48498 * 109.47185 * 210.00526 * 10 8 6 13 13 H 1.48501 * 109.46803 * 330.00278 * 10 8 6 14 14 C 1.34773 * 120.00103 * 87.26646 * 5 4 3 15 15 O 1.21668 * 120.00080 * 359.71998 * 14 5 4 16 16 C 1.46948 * 120.00176 * 179.72379 * 14 5 4 17 17 C 1.33122 * 120.00198 * 172.10859 * 16 14 5 18 18 C 1.50702 * 119.99907 * 347.07986 * 17 16 14 19 19 H 1.08995 * 109.87004 * 349.45148 * 18 17 16 20 20 C 1.54105 * 109.87550 * 110.45901 * 18 17 16 21 21 C 1.54811 * 104.18582 * 121.45392 * 20 18 17 22 22 C 1.54996 * 102.09534 * 20.87795 * 21 20 18 23 23 O 1.43743 * 109.87713 * 228.28396 * 18 17 16 24 24 H 1.08996 * 109.47388 * 299.99607 * 1 2 3 25 25 H 1.08997 * 109.47893 * 60.00226 * 1 2 3 26 26 H 1.09006 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47319 * 60.00541 * 3 2 1 28 28 H 1.09002 * 109.47004 * 299.99497 * 3 2 1 29 29 H 1.08994 * 109.47435 * 304.99821 * 4 3 2 30 30 H 1.08998 * 109.46782 * 184.99794 * 4 3 2 31 31 H 0.97004 * 119.99729 * 179.97438 * 9 8 6 32 32 H 1.08002 * 120.00096 * 352.11015 * 16 14 5 33 33 H 1.08000 * 120.00083 * 167.07735 * 17 16 14 34 34 H 1.09005 * 110.48743 * 240.12672 * 20 18 17 35 35 H 1.09000 * 110.49027 * 2.63949 * 20 18 17 36 36 H 1.09003 * 110.90656 * 139.07748 * 21 20 18 37 37 H 1.09003 * 110.90695 * 262.67556 * 21 20 18 38 38 H 1.08998 * 110.61604 * 81.47598 * 22 21 20 39 39 H 1.08998 * 110.61903 * 204.31647 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1559 -0.7902 -1.3188 7 1 3.8711 -1.3301 -2.2097 8 6 4.7059 -1.4720 -0.2386 9 7 5.3671 -0.8135 0.6859 10 14 4.5043 -3.3241 -0.1022 11 1 5.6381 -3.9969 -0.7856 12 1 4.4865 -3.7160 1.3300 13 1 3.2281 -3.7315 -0.7428 14 6 4.2084 1.3288 -2.3381 15 8 4.0480 2.5335 -2.2794 16 6 4.6557 0.7074 -3.5923 17 6 4.7347 1.4348 -4.7044 18 6 4.0995 2.8004 -4.7583 19 1 3.4694 2.9507 -3.8818 20 6 5.1929 3.8851 -4.8099 21 6 4.9031 4.6537 -6.1221 22 6 3.4159 4.3032 -6.3822 23 8 3.3147 2.9275 -5.9559 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9784 2.1765 0.0889 31 1 5.7505 -1.2890 1.4395 32 1 4.9205 -0.3395 -3.6119 33 1 5.2539 1.0463 -5.5681 34 1 5.1101 4.5514 -3.9512 35 1 6.1821 3.4285 -4.8432 36 1 5.0308 5.7270 -5.9805 37 1 5.5357 4.2918 -6.9327 38 1 2.7617 4.9390 -5.7857 39 1 3.1790 4.3975 -7.4419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819564120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:13 Heat of formation + Delta-G solvation = -90.938533 kcal Electronic energy + Delta-G solvation = -21457.993257 eV Core-core repulsion = 18174.201613 eV Total energy + Delta-G solvation = -3283.791643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.32157 -38.41297 -36.96512 -34.88623 -32.75214 -31.60930 -31.58995 -29.47485 -27.75033 -25.82490 -24.77628 -23.23766 -22.01334 -21.15607 -20.05804 -18.85163 -16.78373 -16.54429 -15.89469 -15.53963 -15.39262 -15.08846 -14.77603 -14.33766 -14.16441 -13.86316 -13.28706 -13.19649 -12.74768 -12.56578 -12.02248 -11.90535 -11.62217 -11.35092 -11.17275 -11.11656 -11.06868 -10.97256 -10.80948 -10.57332 -10.40548 -10.34690 -10.02818 -9.54047 -9.00426 -8.95610 -8.55741 -8.07960 -7.46644 -6.35055 -4.01554 2.18859 3.17942 3.25676 3.32262 4.12410 4.24352 4.51030 4.58272 4.80741 4.93984 5.08991 5.12851 5.26970 5.53238 5.66864 5.67362 5.74548 5.84450 5.90981 5.96276 6.00545 6.00743 6.06817 6.16743 6.30961 6.34020 6.36030 6.41786 6.69263 6.77445 7.07259 7.26521 7.28781 7.43443 7.51281 7.83663 8.01040 8.37938 9.10254 9.50238 9.92585 10.66808 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020543 B = 0.005716 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.643616 B = 4897.033156 C = 5519.484779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.053 3.947 4 C 0.111 3.889 5 N -0.413 5.413 6 C -0.320 4.320 7 H 0.088 0.912 8 C 0.048 3.952 9 N -0.862 5.862 10 Si 0.918 3.082 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.485 3.515 15 O -0.606 6.606 16 C -0.147 4.147 17 C -0.122 4.122 18 C 0.080 3.920 19 H 0.130 0.870 20 C -0.133 4.133 21 C -0.157 4.157 22 C 0.048 3.952 23 O -0.383 6.383 24 H 0.030 0.970 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.270 0.730 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.411 4.936 -5.824 8.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.024 4.024 4 C -0.013 4.013 5 N -0.128 5.128 6 C -0.448 4.448 7 H 0.106 0.894 8 C -0.158 4.158 9 N -0.499 5.499 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.277 3.723 15 O -0.496 6.496 16 C -0.168 4.168 17 C -0.143 4.143 18 C 0.024 3.976 19 H 0.147 0.853 20 C -0.171 4.171 21 C -0.194 4.194 22 C -0.029 4.029 23 O -0.303 6.303 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.399 5.093 -5.625 8.314 hybrid contribution -0.080 -0.703 0.240 0.747 sum -3.479 4.390 -5.385 7.770 Atomic orbital electron populations 1.22644 0.83424 1.01748 0.98830 1.88137 1.17375 1.27697 1.95030 1.23015 0.96435 0.84354 0.98618 1.21513 0.89278 0.99177 0.91335 1.43255 1.54319 1.06733 1.08497 1.19304 1.40458 0.81540 1.03538 0.89413 1.25359 0.93832 1.00168 0.96415 1.69840 1.30717 1.37001 1.12345 0.86080 0.78901 0.82846 0.77695 1.20493 1.20805 1.19191 1.18640 0.81673 0.86042 0.85936 1.90418 1.59712 1.14759 1.84751 1.22874 1.00848 0.99923 0.93127 1.23283 0.97931 0.95491 0.97606 1.22756 0.93282 0.92475 0.89083 0.85313 1.22778 0.99704 0.97499 0.97140 1.23157 0.97282 1.00548 0.98456 1.23416 0.95456 0.84392 0.99609 1.88844 1.70720 1.26483 1.44273 0.95192 0.94949 0.90429 0.94278 0.94121 0.86692 0.91018 0.92012 0.85148 0.87060 0.90427 0.91224 0.90827 0.91105 0.92635 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.84 10.32 -35.23 -0.36 -8.20 16 3 C 0.05 1.12 6.27 37.16 0.23 1.35 16 4 C 0.11 2.63 5.34 -4.03 -0.02 2.61 16 5 N -0.41 -10.42 2.48 -116.20 -0.29 -10.70 16 6 C -0.32 -8.19 8.02 -15.02 -0.12 -8.31 16 7 H 0.09 2.19 6.93 -52.48 -0.36 1.82 16 8 C 0.05 1.22 5.01 -17.44 -0.09 1.13 16 9 N -0.86 -22.70 11.34 55.50 0.63 -22.07 16 10 Si 0.92 19.92 29.59 -169.99 -5.03 14.89 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 14 C 0.48 11.82 7.38 -12.74 -0.09 11.72 16 15 O -0.61 -15.08 12.79 5.22 0.07 -15.01 16 16 C -0.15 -3.15 9.21 -37.84 -0.35 -3.50 16 17 C -0.12 -2.34 9.00 -36.09 -0.32 -2.66 16 18 C 0.08 1.52 2.97 -27.31 -0.08 1.43 16 19 H 0.13 2.85 4.88 -52.61 -0.26 2.60 16 20 C -0.13 -2.16 6.54 -25.20 -0.16 -2.33 16 21 C -0.16 -2.02 7.15 -24.72 -0.18 -2.19 16 22 C 0.05 0.67 7.72 38.21 0.29 0.96 16 23 O -0.38 -6.96 11.17 -35.23 -0.39 -7.36 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.12 2.93 5.47 -51.93 -0.28 2.65 16 30 H 0.07 1.70 7.51 -51.93 -0.39 1.31 16 31 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.13 2.69 6.68 -52.49 -0.35 2.34 16 33 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.11 7.69 -51.93 -0.40 0.71 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 321.58 15.07 4.85 4.85 Total: -1.00 -29.06 321.58 -6.14 -35.20 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.83 Total: 6.57 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 0.22 Total: 1.83 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.34 Total: -32.78 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.69 Total: -30.57 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.06 -6.14 -35.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819564120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.735 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds