Wall clock time and date at job start Mon Mar 30 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 113.99695 * 2 1 4 4 C 1.53007 * 109.46811 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47044 * 65.00109 * 4 3 2 6 6 C 1.36810 * 119.99762 * 266.98578 * 5 4 3 7 7 H 1.08006 * 120.00134 * 141.56468 * 6 5 4 8 8 C 1.39073 * 120.00569 * 321.56645 * 6 5 4 9 9 N 1.31359 * 119.99578 * 342.15796 * 8 6 5 10 10 Si 1.86803 * 120.00710 * 162.15687 * 8 6 5 11 11 H 1.48496 * 109.46860 * 89.99948 * 10 8 6 12 12 H 1.48498 * 109.47185 * 210.00526 * 10 8 6 13 13 H 1.48501 * 109.46803 * 330.00278 * 10 8 6 14 14 C 1.34773 * 120.00103 * 87.26646 * 5 4 3 15 15 O 1.21668 * 120.00080 * 359.71998 * 14 5 4 16 16 C 1.46948 * 120.00176 * 179.72379 * 14 5 4 17 17 C 1.33122 * 120.00198 * 172.10859 * 16 14 5 18 18 C 1.50702 * 119.99907 * 347.07986 * 17 16 14 19 19 H 1.08995 * 109.87004 * 349.45148 * 18 17 16 20 20 C 1.54105 * 109.87550 * 110.45901 * 18 17 16 21 21 C 1.54811 * 104.18582 * 121.45392 * 20 18 17 22 22 C 1.54996 * 102.09534 * 20.87795 * 21 20 18 23 23 O 1.43743 * 109.87713 * 228.28396 * 18 17 16 24 24 H 1.08996 * 109.47388 * 299.99607 * 1 2 3 25 25 H 1.08997 * 109.47893 * 60.00226 * 1 2 3 26 26 H 1.09006 * 109.47315 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47319 * 60.00541 * 3 2 1 28 28 H 1.09002 * 109.47004 * 299.99497 * 3 2 1 29 29 H 1.08994 * 109.47435 * 304.99821 * 4 3 2 30 30 H 1.08998 * 109.46782 * 184.99794 * 4 3 2 31 31 H 0.97004 * 119.99729 * 179.97438 * 9 8 6 32 32 H 1.08002 * 120.00096 * 352.11015 * 16 14 5 33 33 H 1.08000 * 120.00083 * 167.07735 * 17 16 14 34 34 H 1.09005 * 110.48743 * 240.12672 * 20 18 17 35 35 H 1.09000 * 110.49027 * 2.63949 * 20 18 17 36 36 H 1.09003 * 110.90656 * 139.07748 * 21 20 18 37 37 H 1.09003 * 110.90695 * 262.67556 * 21 20 18 38 38 H 1.08998 * 110.61604 * 81.47598 * 22 21 20 39 39 H 1.08998 * 110.61903 * 204.31647 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1559 -0.7902 -1.3188 7 1 3.8711 -1.3301 -2.2097 8 6 4.7059 -1.4720 -0.2386 9 7 5.3671 -0.8135 0.6859 10 14 4.5043 -3.3241 -0.1022 11 1 5.6381 -3.9969 -0.7856 12 1 4.4865 -3.7160 1.3300 13 1 3.2281 -3.7315 -0.7428 14 6 4.2084 1.3288 -2.3381 15 8 4.0480 2.5335 -2.2794 16 6 4.6557 0.7074 -3.5923 17 6 4.7347 1.4348 -4.7044 18 6 4.0995 2.8004 -4.7583 19 1 3.4694 2.9507 -3.8818 20 6 5.1929 3.8851 -4.8099 21 6 4.9031 4.6537 -6.1221 22 6 3.4159 4.3032 -6.3822 23 8 3.3147 2.9275 -5.9559 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9784 2.1765 0.0889 31 1 5.7505 -1.2890 1.4395 32 1 4.9205 -0.3395 -3.6119 33 1 5.2539 1.0463 -5.5681 34 1 5.1101 4.5514 -3.9512 35 1 6.1821 3.4285 -4.8432 36 1 5.0308 5.7270 -5.9805 37 1 5.5357 4.2918 -6.9327 38 1 2.7617 4.9390 -5.7857 39 1 3.1790 4.3975 -7.4419 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819564120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:13 Heat of formation + Delta-G solvation = -109.372011 kcal Electronic energy + Delta-G solvation = -21458.792592 eV Core-core repulsion = 18174.201613 eV Total energy + Delta-G solvation = -3284.590979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.93260 -39.96487 -38.57186 -36.71923 -34.37426 -33.51201 -32.84311 -31.15108 -29.14893 -27.30433 -26.61746 -24.82220 -23.41659 -22.50032 -21.69494 -20.67062 -18.45079 -18.27491 -17.32627 -17.14393 -16.94141 -16.68682 -16.25947 -15.98135 -15.78861 -15.46114 -14.92170 -14.49283 -14.32448 -14.10430 -13.65468 -13.38336 -13.34258 -12.90196 -12.85268 -12.57746 -12.52786 -12.50698 -12.33935 -12.08551 -11.99957 -11.77386 -11.61667 -11.07352 -10.77192 -10.52767 -10.17890 -9.82528 -9.36764 -8.25790 -5.98620 0.54474 1.46263 1.50393 1.61712 2.32863 2.52660 2.95355 3.03503 3.16675 3.30363 3.75148 3.88269 4.11508 4.19584 4.25344 4.26139 4.44799 4.50141 4.52586 4.57249 4.61508 4.66248 4.71471 4.79942 4.87551 4.88612 4.95375 5.04096 5.15202 5.27656 5.36459 5.43933 5.50518 5.75850 6.05103 6.08704 6.40780 6.45131 7.17198 7.61613 8.03393 8.76672 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020543 B = 0.005716 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.643616 B = 4897.033156 C = 5519.484779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.065 3.935 4 C 0.110 3.890 5 N -0.429 5.429 6 C -0.333 4.333 7 H 0.088 0.912 8 C 0.009 3.991 9 N -0.893 5.893 10 Si 0.981 3.019 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.474 3.526 15 O -0.620 6.620 16 C -0.179 4.179 17 C -0.093 4.093 18 C 0.076 3.924 19 H 0.094 0.906 20 C -0.134 4.134 21 C -0.144 4.144 22 C 0.038 3.962 23 O -0.402 6.402 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.271 0.729 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 4.952 -7.410 9.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.012 4.012 4 C -0.014 4.014 5 N -0.144 5.144 6 C -0.461 4.461 7 H 0.106 0.894 8 C -0.194 4.194 9 N -0.531 5.531 10 Si 0.805 3.195 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.268 3.732 15 O -0.511 6.511 16 C -0.200 4.200 17 C -0.113 4.113 18 C 0.020 3.980 19 H 0.111 0.889 20 C -0.172 4.172 21 C -0.181 4.181 22 C -0.038 4.038 23 O -0.322 6.322 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.728 5.122 -7.225 9.609 hybrid contribution -0.039 -0.575 0.639 0.861 sum -3.767 4.547 -6.586 8.845 Atomic orbital electron populations 1.22885 0.80697 1.03342 1.00215 1.88068 1.20416 1.27813 1.95293 1.22802 0.94456 0.84600 0.99346 1.21446 0.91449 0.97950 0.90563 1.43436 1.55087 1.06904 1.08961 1.19480 1.40742 0.81899 1.03943 0.89419 1.26105 0.93307 1.04021 0.95934 1.69938 1.31686 1.38530 1.12934 0.85131 0.78904 0.77976 0.77510 1.19575 1.20744 1.19080 1.19178 0.81152 0.86106 0.86796 1.90414 1.60153 1.15296 1.85265 1.22779 1.03764 1.00569 0.92842 1.23654 0.95232 0.94936 0.97508 1.22517 0.93645 0.93317 0.88539 0.88904 1.22736 0.98723 0.96866 0.98842 1.23143 0.96620 1.01627 0.96705 1.23744 0.96339 0.82310 1.01368 1.88813 1.70742 1.29205 1.43431 0.92859 0.94411 0.88811 0.91458 0.95217 0.88516 0.92115 0.91913 0.84771 0.83869 0.91720 0.90952 0.88362 0.89394 0.92452 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -17.04 10.32 -148.98 -1.54 -18.57 16 3 C 0.07 2.77 6.27 71.98 0.45 3.22 16 4 C 0.11 5.41 5.34 86.38 0.46 5.87 16 5 N -0.43 -22.28 2.48 -639.79 -1.59 -23.87 16 6 C -0.33 -17.35 8.02 84.12 0.67 -16.67 16 7 H 0.09 4.45 6.93 -2.91 -0.02 4.43 16 8 C 0.01 0.47 5.01 84.96 0.43 0.89 16 9 N -0.89 -48.04 11.34 21.69 0.25 -47.80 16 10 Si 0.98 40.97 29.59 68.60 2.03 43.00 16 11 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 14 C 0.47 23.85 7.38 86.53 0.64 24.48 16 15 O -0.62 -31.96 12.79 -4.25 -0.05 -32.02 16 16 C -0.18 -7.75 9.21 23.40 0.22 -7.53 16 17 C -0.09 -3.47 9.00 24.54 0.22 -3.25 16 18 C 0.08 2.85 2.97 30.22 0.09 2.94 16 19 H 0.09 4.23 4.88 -13.12 -0.06 4.16 16 20 C -0.13 -4.16 6.54 31.59 0.21 -3.95 16 21 C -0.14 -3.23 7.15 31.90 0.23 -3.00 16 22 C 0.04 0.96 7.72 72.66 0.56 1.52 16 23 O -0.40 -13.94 11.17 -148.98 -1.66 -15.60 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 5.13 5.47 -2.39 -0.01 5.11 16 30 H 0.06 3.02 7.51 -2.39 -0.02 3.00 16 31 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 32 H 0.13 5.61 6.68 -2.91 -0.02 5.59 16 33 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.07 2.18 7.69 -2.39 -0.02 2.17 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -63.91 321.58 3.84 -60.08 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.98 Total: 28.25 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.42 Total: 6.53 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.34 Total: -71.66 kcal Atomic # 8 Polarization: -62.94 SS G_CDS: -3.26 Total: -66.19 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -63.91 3.84 -60.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819564120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.292 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds