Wall clock time and date at job start Mon Mar 30 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00412 * 2 1 4 4 C 1.52997 * 109.47278 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47233 * 65.00088 * 4 3 2 6 6 C 1.36817 * 120.00113 * 89.99486 * 5 4 3 7 7 H 1.07992 * 120.00033 * 300.10893 * 6 5 4 8 8 C 1.39077 * 119.99595 * 120.10161 * 6 5 4 9 9 N 1.31348 * 119.99829 * 171.25851 * 8 6 5 10 10 Si 1.86794 * 120.00258 * 350.98976 * 8 6 5 11 11 H 1.48500 * 109.47567 * 95.78758 * 10 8 6 12 12 H 1.48502 * 109.47177 * 215.79142 * 10 8 6 13 13 H 1.48501 * 109.46915 * 335.78799 * 10 8 6 14 14 C 1.34776 * 119.99666 * 269.99914 * 5 4 3 15 15 O 1.21654 * 120.00425 * 353.73193 * 14 5 4 16 16 C 1.46951 * 119.99623 * 173.73137 * 14 5 4 17 17 C 1.33130 * 119.99941 * 184.50028 * 16 14 5 18 18 C 1.50700 * 119.99784 * 9.61546 * 17 16 14 19 19 H 1.08992 * 110.33170 * 23.83763 * 18 17 16 20 20 C 1.54478 * 110.36984 * 261.59071 * 18 17 16 21 21 C 1.54507 * 104.06398 * 217.19337 * 20 18 17 22 22 C 1.54482 * 104.06298 * 359.97438 * 21 20 18 23 23 O 1.44422 * 110.36950 * 146.09408 * 18 17 16 24 24 H 1.09000 * 109.46937 * 300.00182 * 1 2 3 25 25 H 1.08999 * 109.46910 * 60.00083 * 1 2 3 26 26 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46481 * 59.99387 * 3 2 1 28 28 H 1.08999 * 109.47042 * 299.99901 * 3 2 1 29 29 H 1.09001 * 109.46895 * 304.99996 * 4 3 2 30 30 H 1.09002 * 109.46997 * 185.00220 * 4 3 2 31 31 H 0.96999 * 120.00511 * 179.72969 * 9 8 6 32 32 H 1.08003 * 120.00474 * 4.50018 * 16 14 5 33 33 H 1.08000 * 119.99969 * 189.60600 * 17 16 14 34 34 H 1.09009 * 110.51251 * 335.83592 * 20 18 17 35 35 H 1.08994 * 110.51238 * 98.40865 * 20 18 17 36 36 H 1.09000 * 110.51374 * 118.64162 * 21 20 18 37 37 H 1.09003 * 110.51289 * 241.35765 * 21 20 18 38 38 H 1.09000 * 110.37467 * 142.81412 * 22 21 20 39 39 H 1.09004 * 110.36944 * 265.14957 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.2678 1.3444 -2.3362 7 1 3.5078 1.9831 -2.7613 8 6 5.5424 1.3154 -2.8918 9 7 5.7768 1.9277 -4.0300 10 14 6.9229 0.4121 -2.0157 11 1 7.0515 -0.9575 -2.5750 12 1 8.1979 1.1481 -2.2105 13 1 6.6167 0.3277 -0.5651 14 6 4.0960 -0.7761 -1.3331 15 8 3.9484 -1.4621 -0.3392 16 6 4.4042 -1.4085 -2.6232 17 6 4.4335 -2.7357 -2.7238 18 6 3.9428 -3.5888 -1.5826 19 1 3.2395 -3.0289 -0.9664 20 6 5.1324 -4.0809 -0.7289 21 6 4.7347 -5.5178 -0.3235 22 6 3.3515 -5.7238 -0.9798 23 8 3.3233 -4.7927 -2.0852 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6888 1.8464 -0.8900 29 1 3.8508 0.5684 0.8427 30 1 3.9786 2.1765 0.0903 31 1 6.6666 1.9109 -4.4156 32 1 4.6069 -0.7967 -3.4899 33 1 4.8089 -3.2009 -3.6233 34 1 6.0485 -4.0904 -1.3196 35 1 5.2548 -3.4529 0.1536 36 1 5.4541 -6.2377 -0.7139 37 1 4.6589 -5.6017 0.7606 38 1 3.2521 -6.7468 -1.3426 39 1 2.5568 -5.4929 -0.2704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819564129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:18 Heat of formation + Delta-G solvation = -90.617625 kcal Electronic energy + Delta-G solvation = -21971.431011 eV Core-core repulsion = 18687.653283 eV Total energy + Delta-G solvation = -3283.777728 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.43231 -38.52516 -37.14105 -34.86890 -32.98932 -32.01135 -31.56402 -29.57853 -27.78725 -25.93503 -24.60721 -23.46796 -22.06324 -21.09504 -20.20486 -18.95795 -17.05134 -16.19217 -15.95276 -15.72565 -15.62745 -15.11939 -14.99402 -14.60193 -14.31492 -13.58091 -13.32138 -13.29910 -12.74970 -12.67565 -12.27948 -12.00315 -11.82755 -11.60200 -11.31361 -11.19756 -11.09349 -10.97577 -10.82795 -10.63635 -10.49850 -10.23389 -10.13490 -9.51590 -9.17765 -9.04276 -8.50056 -8.29770 -7.42495 -6.46862 -4.34178 2.18340 3.15343 3.24820 3.33809 4.14024 4.18359 4.32240 4.48485 4.59693 4.91450 4.98354 5.10686 5.29283 5.53086 5.58878 5.62185 5.72703 5.74940 5.84232 5.89316 5.92429 5.94425 5.99220 6.02498 6.08968 6.23016 6.31708 6.43189 6.46058 6.62127 6.71593 7.04881 7.20323 7.43510 7.64866 7.74006 7.83550 8.45036 9.00454 9.26862 9.74824 10.60994 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.009037 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.762902 B = 3097.471499 C = 4419.027194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.051 3.949 4 C 0.110 3.890 5 N -0.463 5.463 6 C -0.346 4.346 7 H 0.095 0.905 8 C 0.078 3.922 9 N -0.867 5.867 10 Si 0.860 3.140 11 H -0.262 1.262 12 H -0.284 1.284 13 H -0.260 1.260 14 C 0.520 3.480 15 O -0.572 6.572 16 C -0.161 4.161 17 C -0.112 4.112 18 C 0.093 3.907 19 H 0.122 0.878 20 C -0.136 4.136 21 C -0.154 4.154 22 C 0.049 3.951 23 O -0.384 6.384 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.276 0.724 32 H 0.143 0.857 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 -7.045 6.215 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.027 4.027 4 C -0.013 4.013 5 N -0.184 5.184 6 C -0.474 4.474 7 H 0.113 0.887 8 C -0.130 4.130 9 N -0.502 5.502 10 Si 0.685 3.315 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.183 1.183 14 C 0.312 3.688 15 O -0.457 6.457 16 C -0.182 4.182 17 C -0.133 4.133 18 C 0.037 3.963 19 H 0.139 0.861 20 C -0.174 4.174 21 C -0.192 4.192 22 C -0.029 4.029 23 O -0.304 6.304 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.902 -7.464 6.350 10.548 hybrid contribution 0.775 0.125 0.259 0.827 sum -3.127 -7.339 6.610 10.360 Atomic orbital electron populations 1.22644 0.82771 1.01957 0.99037 1.88099 1.18001 1.27568 1.95128 1.22980 0.95613 0.84791 0.99314 1.21529 0.91227 0.98936 0.89627 1.43358 1.60634 1.03927 1.10529 1.18903 0.97128 1.25050 1.06277 0.88733 1.25737 0.97466 0.94712 0.95071 1.69634 1.23054 1.40846 1.16616 0.86938 0.81941 0.80598 0.82012 1.18705 1.20992 1.18338 1.18694 0.78664 0.82894 0.88512 1.90503 1.54676 1.62270 1.38247 1.23036 1.00988 0.94917 0.99232 1.23235 0.97499 0.93875 0.98662 1.22706 0.95177 0.85336 0.93094 0.86093 1.22785 0.98615 0.94998 1.00967 1.22932 0.97644 0.97677 1.00925 1.23286 0.96314 0.93863 0.89396 1.89091 1.81209 1.25046 1.35009 0.94994 0.94667 0.90343 0.93923 0.93106 0.90824 0.89648 0.91342 0.83931 0.86420 0.91862 0.89567 0.91374 0.90966 0.89928 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.25 9.76 -35.49 -0.35 -7.60 16 3 C 0.05 0.92 6.28 37.16 0.23 1.15 16 4 C 0.11 2.26 5.86 -4.04 -0.02 2.24 16 5 N -0.46 -11.07 1.83 -116.21 -0.21 -11.28 16 6 C -0.35 -8.88 8.86 -15.02 -0.13 -9.01 16 7 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 8 C 0.08 2.04 4.20 -17.45 -0.07 1.97 16 9 N -0.87 -23.52 13.95 55.50 0.77 -22.74 16 10 Si 0.86 20.64 25.01 -169.99 -4.25 16.39 16 11 H -0.26 -6.18 6.81 56.52 0.39 -5.80 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.52 12.55 5.20 -12.73 -0.07 12.48 16 15 O -0.57 -13.93 11.25 4.97 0.06 -13.87 16 16 C -0.16 -3.70 6.95 -37.83 -0.26 -3.97 16 17 C -0.11 -2.32 9.18 -36.09 -0.33 -2.65 16 18 C 0.09 1.83 2.67 -27.11 -0.07 1.76 16 19 H 0.12 2.70 5.44 -51.93 -0.28 2.42 16 20 C -0.14 -2.39 6.34 -25.16 -0.16 -2.55 16 21 C -0.15 -2.15 7.09 -25.16 -0.18 -2.33 16 22 C 0.05 0.70 7.63 37.94 0.29 0.99 16 23 O -0.38 -7.14 11.34 -35.23 -0.40 -7.54 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.54 7.34 -51.93 -0.38 1.16 16 30 H 0.09 1.61 8.04 -51.93 -0.42 1.19 16 31 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.14 3.43 5.99 -52.48 -0.31 3.11 16 33 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.06 1.09 7.87 -51.92 -0.41 0.68 16 35 H 0.09 1.62 7.32 -51.93 -0.38 1.24 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -29.40 315.15 -5.28 -34.69 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.99 Total: 5.53 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 0.33 Total: 1.68 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.56 Total: -34.02 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.69 Total: -29.02 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.25 Total: 16.39 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.40 -5.28 -34.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819564129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.932 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds