Wall clock time and date at job start Mon Mar 30 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00412 * 2 1 4 4 C 1.52997 * 109.47278 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47233 * 65.00088 * 4 3 2 6 6 C 1.36817 * 120.00113 * 89.99486 * 5 4 3 7 7 H 1.07992 * 120.00033 * 300.10893 * 6 5 4 8 8 C 1.39077 * 119.99595 * 120.10161 * 6 5 4 9 9 N 1.31348 * 119.99829 * 171.25851 * 8 6 5 10 10 Si 1.86794 * 120.00258 * 350.98976 * 8 6 5 11 11 H 1.48500 * 109.47567 * 95.78758 * 10 8 6 12 12 H 1.48502 * 109.47177 * 215.79142 * 10 8 6 13 13 H 1.48501 * 109.46915 * 335.78799 * 10 8 6 14 14 C 1.34776 * 119.99666 * 269.99914 * 5 4 3 15 15 O 1.21654 * 120.00425 * 353.73193 * 14 5 4 16 16 C 1.46951 * 119.99623 * 173.73137 * 14 5 4 17 17 C 1.33130 * 119.99941 * 184.50028 * 16 14 5 18 18 C 1.50700 * 119.99784 * 9.61546 * 17 16 14 19 19 H 1.08992 * 110.33170 * 23.83763 * 18 17 16 20 20 C 1.54478 * 110.36984 * 261.59071 * 18 17 16 21 21 C 1.54507 * 104.06398 * 217.19337 * 20 18 17 22 22 C 1.54482 * 104.06298 * 359.97438 * 21 20 18 23 23 O 1.44422 * 110.36950 * 146.09408 * 18 17 16 24 24 H 1.09000 * 109.46937 * 300.00182 * 1 2 3 25 25 H 1.08999 * 109.46910 * 60.00083 * 1 2 3 26 26 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46481 * 59.99387 * 3 2 1 28 28 H 1.08999 * 109.47042 * 299.99901 * 3 2 1 29 29 H 1.09001 * 109.46895 * 304.99996 * 4 3 2 30 30 H 1.09002 * 109.46997 * 185.00220 * 4 3 2 31 31 H 0.96999 * 120.00511 * 179.72969 * 9 8 6 32 32 H 1.08003 * 120.00474 * 4.50018 * 16 14 5 33 33 H 1.08000 * 119.99969 * 189.60600 * 17 16 14 34 34 H 1.09009 * 110.51251 * 335.83592 * 20 18 17 35 35 H 1.08994 * 110.51238 * 98.40865 * 20 18 17 36 36 H 1.09000 * 110.51374 * 118.64162 * 21 20 18 37 37 H 1.09003 * 110.51289 * 241.35765 * 21 20 18 38 38 H 1.09000 * 110.37467 * 142.81412 * 22 21 20 39 39 H 1.09004 * 110.36944 * 265.14957 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.2678 1.3444 -2.3362 7 1 3.5078 1.9831 -2.7613 8 6 5.5424 1.3154 -2.8918 9 7 5.7768 1.9277 -4.0300 10 14 6.9229 0.4121 -2.0157 11 1 7.0515 -0.9575 -2.5750 12 1 8.1979 1.1481 -2.2105 13 1 6.6167 0.3277 -0.5651 14 6 4.0960 -0.7761 -1.3331 15 8 3.9484 -1.4621 -0.3392 16 6 4.4042 -1.4085 -2.6232 17 6 4.4335 -2.7357 -2.7238 18 6 3.9428 -3.5888 -1.5826 19 1 3.2395 -3.0289 -0.9664 20 6 5.1324 -4.0809 -0.7289 21 6 4.7347 -5.5178 -0.3235 22 6 3.3515 -5.7238 -0.9798 23 8 3.3233 -4.7927 -2.0852 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6888 1.8464 -0.8900 29 1 3.8508 0.5684 0.8427 30 1 3.9786 2.1765 0.0903 31 1 6.6666 1.9109 -4.4156 32 1 4.6069 -0.7967 -3.4899 33 1 4.8089 -3.2009 -3.6233 34 1 6.0485 -4.0904 -1.3196 35 1 5.2548 -3.4529 0.1536 36 1 5.4541 -6.2377 -0.7139 37 1 4.6589 -5.6017 0.7606 38 1 3.2521 -6.7468 -1.3426 39 1 2.5568 -5.4929 -0.2704 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819564129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:18 Heat of formation + Delta-G solvation = -109.984372 kcal Electronic energy + Delta-G solvation = -21972.270816 eV Core-core repulsion = 18687.653283 eV Total energy + Delta-G solvation = -3284.617533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11160 -40.02138 -38.59262 -36.69110 -34.72697 -33.90376 -32.86517 -31.15897 -29.21796 -27.24022 -26.53401 -24.99848 -23.50513 -22.45696 -21.82670 -20.79491 -18.80912 -17.79647 -17.67725 -17.19131 -17.08207 -16.62466 -16.46831 -16.12246 -15.84618 -15.34630 -14.94553 -14.79108 -14.49052 -14.27584 -13.85487 -13.54183 -13.33728 -13.17392 -12.87658 -12.72790 -12.60160 -12.51867 -12.44357 -12.12218 -12.08514 -11.93971 -11.49963 -11.10884 -10.90928 -10.53015 -10.21074 -10.07875 -9.28806 -8.49572 -6.38265 0.44910 1.23838 1.30113 1.39697 2.17808 2.42581 2.74768 2.86402 3.04423 3.15397 3.70478 3.86779 4.08173 4.09888 4.25183 4.26690 4.33758 4.45251 4.48819 4.53903 4.56215 4.57209 4.65628 4.74351 4.83225 4.85800 4.95982 4.96487 5.02827 5.12819 5.19305 5.36152 5.52789 5.75517 5.90065 5.99132 6.36773 6.44579 6.99263 7.37068 7.85544 8.61711 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.009037 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.762902 B = 3097.471499 C = 4419.027194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.104 3.896 5 N -0.474 5.474 6 C -0.339 4.339 7 H 0.071 0.929 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.903 3.097 11 H -0.257 1.257 12 H -0.276 1.276 13 H -0.271 1.271 14 C 0.515 3.485 15 O -0.578 6.578 16 C -0.194 4.194 17 C -0.090 4.090 18 C 0.093 3.907 19 H 0.095 0.905 20 C -0.137 4.137 21 C -0.144 4.144 22 C 0.040 3.960 23 O -0.399 6.399 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.281 0.719 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -8.787 7.217 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.020 4.020 4 C -0.019 4.019 5 N -0.195 5.195 6 C -0.468 4.468 7 H 0.088 0.912 8 C -0.152 4.152 9 N -0.535 5.535 10 Si 0.727 3.273 11 H -0.181 1.181 12 H -0.202 1.202 13 H -0.196 1.196 14 C 0.308 3.692 15 O -0.464 6.464 16 C -0.214 4.214 17 C -0.110 4.110 18 C 0.037 3.963 19 H 0.112 0.888 20 C -0.175 4.175 21 C -0.182 4.182 22 C -0.036 4.036 23 O -0.320 6.320 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.933 -9.207 7.361 12.427 hybrid contribution 0.655 0.574 -0.030 0.871 sum -3.278 -8.633 7.331 11.791 Atomic orbital electron populations 1.22835 0.80466 1.03024 1.00448 1.88039 1.20651 1.28372 1.95423 1.22897 0.93798 0.84714 1.00604 1.21722 0.93253 0.99152 0.87798 1.43466 1.61027 1.03921 1.11115 1.18686 0.96584 1.24493 1.07018 0.91180 1.26077 0.98748 0.95147 0.95237 1.69688 1.23785 1.42393 1.17624 0.86285 0.80389 0.80224 0.80352 1.18118 1.20166 1.19605 1.18900 0.78402 0.83019 0.88873 1.90497 1.55028 1.62330 1.38549 1.22886 1.04292 0.95738 0.98500 1.23593 0.94533 0.93324 0.99525 1.22472 0.95513 0.85787 0.92572 0.88804 1.22750 0.97715 0.97173 0.99841 1.22930 0.97628 0.95424 1.02179 1.23606 0.96802 0.94494 0.88695 1.89066 1.81211 1.24994 1.36683 0.92380 0.94347 0.89554 0.90218 0.94007 0.91399 0.88397 0.90878 0.85467 0.84236 0.91659 0.91267 0.89130 0.89194 0.86760 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.41 -15.68 9.76 -148.74 -1.45 -17.14 16 3 C 0.06 2.03 6.28 71.98 0.45 2.48 16 4 C 0.10 4.24 5.86 86.38 0.51 4.74 16 5 N -0.47 -22.92 1.83 -639.81 -1.17 -24.08 16 6 C -0.34 -17.83 8.86 84.12 0.75 -17.09 16 7 H 0.07 3.98 8.06 -2.91 -0.02 3.95 16 8 C 0.05 2.82 4.20 84.97 0.36 3.18 16 9 N -0.90 -49.40 13.95 21.69 0.30 -49.10 16 10 Si 0.90 42.67 25.01 68.60 1.72 44.39 16 11 H -0.26 -11.78 6.81 99.48 0.68 -11.11 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 14 C 0.52 25.12 5.20 86.53 0.45 25.57 16 15 O -0.58 -28.37 11.25 -3.96 -0.04 -28.41 16 16 C -0.19 -8.96 6.95 23.41 0.16 -8.80 16 17 C -0.09 -3.64 9.18 24.54 0.23 -3.42 16 18 C 0.09 3.59 2.67 30.35 0.08 3.67 16 19 H 0.09 4.20 5.44 -2.39 -0.01 4.19 16 20 C -0.14 -4.58 6.34 31.61 0.20 -4.38 16 21 C -0.14 -3.54 7.09 31.61 0.22 -3.32 16 22 C 0.04 1.04 7.63 72.49 0.55 1.59 16 23 O -0.40 -14.06 11.34 -148.98 -1.69 -15.75 16 24 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 2.83 7.34 -2.39 -0.02 2.82 16 30 H 0.10 3.66 8.04 -2.39 -0.02 3.64 16 31 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.13 6.25 5.99 -2.91 -0.02 6.24 16 33 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 34 H 0.06 2.13 7.87 -2.38 -0.02 2.11 16 35 H 0.07 2.54 7.32 -2.39 -0.02 2.52 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -63.46 315.15 3.87 -59.59 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 1.00 Total: 24.23 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.21 Total: 6.28 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -0.87 Total: -73.18 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -3.19 Total: -61.30 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.72 Total: 44.39 kcal Total: -63.46 3.87 -59.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819564129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.392 kcal (2) G-P(sol) polarization free energy of solvation -63.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds