Wall clock time and date at job start Mon Mar 30 2020 05:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99699 * 2 1 4 4 C 1.53002 * 109.46876 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47190 * 65.99484 * 4 3 2 6 6 C 1.36818 * 119.99618 * 266.63051 * 5 4 3 7 7 H 1.08002 * 120.00239 * 141.77933 * 6 5 4 8 8 C 1.39076 * 119.99936 * 321.78185 * 6 5 4 9 9 N 1.31354 * 119.99693 * 158.17359 * 8 6 5 10 10 Si 1.86801 * 119.99976 * 338.17013 * 8 6 5 11 11 H 1.48501 * 109.46753 * 95.34265 * 10 8 6 12 12 H 1.48498 * 109.46889 * 215.33764 * 10 8 6 13 13 H 1.48496 * 109.46886 * 335.34221 * 10 8 6 14 14 C 1.34770 * 120.00403 * 86.62775 * 5 4 3 15 15 O 1.21658 * 120.00106 * 0.02562 * 14 5 4 16 16 C 1.46949 * 120.00167 * 180.02562 * 14 5 4 17 17 C 1.33124 * 120.00144 * 180.02562 * 16 14 5 18 18 C 1.50706 * 120.00095 * 180.02562 * 17 16 14 19 19 H 1.09006 * 110.54599 * 247.87692 * 18 17 16 20 20 C 1.54997 * 110.62108 * 124.99559 * 18 17 16 21 21 C 1.54807 * 102.09021 * 204.31590 * 20 18 17 22 22 C 1.54108 * 104.19108 * 20.88135 * 21 20 18 23 23 O 1.43742 * 107.28994 * 2.02856 * 22 21 20 24 24 H 1.09000 * 109.46804 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47350 * 300.00037 * 1 2 3 26 26 H 1.09007 * 109.47201 * 60.00121 * 1 2 3 27 27 H 1.08997 * 109.47081 * 59.99597 * 3 2 1 28 28 H 1.09006 * 109.47258 * 299.99715 * 3 2 1 29 29 H 1.08994 * 109.46880 * 305.99155 * 4 3 2 30 30 H 1.09003 * 109.46981 * 185.99120 * 4 3 2 31 31 H 0.97001 * 119.99382 * 179.97438 * 9 8 6 32 32 H 1.08002 * 119.99769 * 359.97438 * 16 14 5 33 33 H 1.08002 * 120.00087 * 359.97438 * 17 16 14 34 34 H 1.09001 * 110.90500 * 86.11876 * 20 18 17 35 35 H 1.08994 * 110.90485 * 322.51575 * 20 18 17 36 36 H 1.08995 * 110.48663 * 262.20403 * 21 20 18 37 37 H 1.08998 * 110.48935 * 139.55454 * 21 20 18 38 38 H 1.09001 * 109.87617 * 121.45028 * 22 21 20 39 39 H 1.08991 * 109.87621 * 242.60717 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9784 0.5858 -1.2608 6 6 4.1659 -0.7668 -1.3472 7 1 3.8869 -1.2943 -2.2473 8 6 4.7159 -1.4623 -0.2758 9 7 4.5142 -2.7551 -0.1591 10 14 5.7413 -0.5582 0.9972 11 1 4.8823 -0.1835 2.1492 12 1 6.8399 -1.4409 1.4655 13 1 6.3166 0.6682 0.3890 14 6 4.2012 1.3670 -2.3362 15 8 4.0348 2.5697 -2.2593 16 6 4.6450 0.7661 -3.6016 17 6 4.8655 1.5378 -4.6637 18 6 5.3201 0.9215 -5.9617 19 1 6.3434 1.2201 -6.1893 20 6 4.3661 1.3171 -7.1175 21 6 4.5811 0.1618 -8.1252 22 6 5.1601 -0.9823 -7.2705 23 8 5.2095 -0.5172 -5.9112 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8464 -0.8901 29 1 3.8496 0.5542 0.8323 30 1 3.9783 2.1749 0.1079 31 1 4.8981 -3.2402 0.5880 32 1 4.7930 -0.3016 -3.6698 33 1 4.7178 2.6055 -4.5955 34 1 4.6582 2.2727 -7.5530 35 1 3.3318 1.3472 -6.7750 36 1 5.2904 0.4571 -8.8984 37 1 3.6324 -0.1374 -8.5707 38 1 4.5159 -1.8588 -7.3391 39 1 6.1643 -1.2300 -7.6142 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819564134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:21 Heat of formation + Delta-G solvation = -92.245804 kcal Electronic energy + Delta-G solvation = -21207.968630 eV Core-core repulsion = 17924.120299 eV Total energy + Delta-G solvation = -3283.848331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.35714 -38.77050 -37.01292 -34.82629 -32.90111 -31.98669 -31.89917 -29.67622 -28.01995 -25.82687 -24.82595 -23.63932 -22.35112 -21.30628 -19.94092 -18.50129 -16.96906 -16.63074 -16.24571 -15.86091 -15.65698 -15.15141 -14.89760 -14.51449 -14.37365 -13.82841 -13.69308 -13.48648 -12.80621 -12.72266 -12.42245 -11.83331 -11.83078 -11.63576 -11.56060 -11.35293 -11.09450 -11.02123 -10.82155 -10.73932 -10.57692 -10.01861 -9.87710 -9.60560 -9.14195 -9.04244 -8.59761 -8.53668 -7.71690 -6.36519 -3.90120 2.20755 3.13123 3.27968 3.34931 4.00900 4.20199 4.29268 4.39476 4.49603 4.64808 4.86080 4.97021 5.11553 5.30067 5.32516 5.60591 5.64443 5.70195 5.74165 5.77022 5.83706 5.87045 5.89810 5.97646 5.99904 6.05653 6.08096 6.18107 6.23900 6.46307 6.56558 6.92050 7.26014 7.34296 7.44008 7.83926 8.17131 8.36967 9.06285 9.43918 9.75290 10.74276 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.005831 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.644175 B = 4800.774361 C = 5270.717319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.056 3.944 4 C 0.099 3.901 5 N -0.440 5.440 6 C -0.328 4.328 7 H 0.106 0.894 8 C 0.073 3.927 9 N -0.852 5.852 10 Si 0.869 3.131 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.493 3.507 15 O -0.611 6.611 16 C -0.127 4.127 17 C -0.141 4.141 18 C 0.110 3.890 19 H 0.077 0.923 20 C -0.145 4.145 21 C -0.156 4.156 22 C 0.046 3.954 23 O -0.363 6.363 24 H 0.081 0.919 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.273 0.727 32 H 0.141 0.859 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 5.049 -8.987 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.022 4.022 4 C -0.024 4.024 5 N -0.158 5.158 6 C -0.455 4.455 7 H 0.124 0.876 8 C -0.135 4.135 9 N -0.486 5.486 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.286 3.714 15 O -0.500 6.500 16 C -0.147 4.147 17 C -0.161 4.161 18 C 0.053 3.947 19 H 0.095 0.905 20 C -0.183 4.183 21 C -0.194 4.194 22 C -0.031 4.031 23 O -0.282 6.282 24 H 0.099 0.901 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.707 5.097 -8.602 10.143 hybrid contribution 0.257 0.464 0.602 0.802 sum -1.450 5.561 -8.000 9.850 Atomic orbital electron populations 1.22657 0.83022 1.02090 0.98715 1.88215 1.17703 1.26670 1.95013 1.22850 0.94864 0.85173 0.99316 1.21754 0.92321 0.99170 0.89179 1.43557 1.56145 1.07635 1.08456 1.18991 1.41830 0.79878 1.04843 0.87639 1.25283 0.95933 0.95117 0.97126 1.69752 1.40216 1.08188 1.30472 0.87057 0.80746 0.80722 0.81791 1.20122 1.21366 1.18616 1.18570 0.81342 0.85682 0.85818 1.90603 1.58752 1.14900 1.85738 1.22853 0.98033 1.01794 0.92052 1.23202 1.00584 0.99777 0.92575 1.21987 0.97904 0.81151 0.93660 0.90514 1.23116 1.01337 0.98510 0.95302 1.22944 1.01867 0.95930 0.98635 1.23116 1.00149 0.97289 0.82588 1.89002 1.94904 1.19894 1.24420 0.90074 0.95196 0.94917 0.93912 0.93229 0.90482 0.89885 0.91657 0.84181 0.85298 0.90226 0.90129 0.90926 0.90629 0.89934 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.36 -7.94 10.38 -35.23 -0.37 -8.31 16 3 C 0.06 1.15 6.26 37.16 0.23 1.39 16 4 C 0.10 2.29 4.46 -4.04 -0.02 2.28 16 5 N -0.44 -11.19 2.13 -116.21 -0.25 -11.43 16 6 C -0.33 -8.96 8.58 -15.02 -0.13 -9.09 16 7 H 0.11 3.06 6.95 -52.49 -0.36 2.70 16 8 C 0.07 2.01 5.29 -17.45 -0.09 1.92 16 9 N -0.85 -24.27 13.95 55.50 0.77 -23.49 16 10 Si 0.87 21.05 25.05 -169.99 -4.26 16.80 16 11 H -0.27 -6.39 6.68 56.52 0.38 -6.01 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.49 12.21 7.57 -12.74 -0.10 12.12 16 15 O -0.61 -15.71 15.85 5.23 0.08 -15.63 16 16 C -0.13 -2.79 8.65 -37.84 -0.33 -3.12 16 17 C -0.14 -2.58 9.12 -36.09 -0.33 -2.91 16 18 C 0.11 1.65 3.88 -26.83 -0.10 1.55 16 19 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.14 -1.72 6.57 -24.72 -0.16 -1.88 16 21 C -0.16 -1.59 7.01 -25.20 -0.18 -1.76 16 22 C 0.05 0.57 7.70 37.74 0.29 0.86 16 23 O -0.36 -6.15 9.81 -35.23 -0.35 -6.49 16 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.84 3.49 -51.93 -0.18 1.66 16 30 H 0.08 1.82 7.52 -51.93 -0.39 1.43 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.14 3.26 5.51 -52.49 -0.29 2.97 16 33 H 0.13 2.32 7.49 -52.49 -0.39 1.93 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -31.84 321.04 -5.17 -37.01 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.85 Total: 3.73 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 0.20 Total: 2.98 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.53 Total: -34.93 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.63 Total: -30.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.26 Total: 16.80 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.84 -5.17 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819564134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.240 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds