Wall clock time and date at job start Mon Mar 30 2020 05:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99699 * 2 1 4 4 C 1.53002 * 109.46876 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47190 * 65.99484 * 4 3 2 6 6 C 1.36818 * 119.99618 * 266.63051 * 5 4 3 7 7 H 1.08002 * 120.00239 * 141.77933 * 6 5 4 8 8 C 1.39076 * 119.99936 * 321.78185 * 6 5 4 9 9 N 1.31354 * 119.99693 * 158.17359 * 8 6 5 10 10 Si 1.86801 * 119.99976 * 338.17013 * 8 6 5 11 11 H 1.48501 * 109.46753 * 95.34265 * 10 8 6 12 12 H 1.48498 * 109.46889 * 215.33764 * 10 8 6 13 13 H 1.48496 * 109.46886 * 335.34221 * 10 8 6 14 14 C 1.34770 * 120.00403 * 86.62775 * 5 4 3 15 15 O 1.21658 * 120.00106 * 0.02562 * 14 5 4 16 16 C 1.46949 * 120.00167 * 180.02562 * 14 5 4 17 17 C 1.33124 * 120.00144 * 180.02562 * 16 14 5 18 18 C 1.50706 * 120.00095 * 180.02562 * 17 16 14 19 19 H 1.09006 * 110.54599 * 247.87692 * 18 17 16 20 20 C 1.54997 * 110.62108 * 124.99559 * 18 17 16 21 21 C 1.54807 * 102.09021 * 204.31590 * 20 18 17 22 22 C 1.54108 * 104.19108 * 20.88135 * 21 20 18 23 23 O 1.43742 * 107.28994 * 2.02856 * 22 21 20 24 24 H 1.09000 * 109.46804 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47350 * 300.00037 * 1 2 3 26 26 H 1.09007 * 109.47201 * 60.00121 * 1 2 3 27 27 H 1.08997 * 109.47081 * 59.99597 * 3 2 1 28 28 H 1.09006 * 109.47258 * 299.99715 * 3 2 1 29 29 H 1.08994 * 109.46880 * 305.99155 * 4 3 2 30 30 H 1.09003 * 109.46981 * 185.99120 * 4 3 2 31 31 H 0.97001 * 119.99382 * 179.97438 * 9 8 6 32 32 H 1.08002 * 119.99769 * 359.97438 * 16 14 5 33 33 H 1.08002 * 120.00087 * 359.97438 * 17 16 14 34 34 H 1.09001 * 110.90500 * 86.11876 * 20 18 17 35 35 H 1.08994 * 110.90485 * 322.51575 * 20 18 17 36 36 H 1.08995 * 110.48663 * 262.20403 * 21 20 18 37 37 H 1.08998 * 110.48935 * 139.55454 * 21 20 18 38 38 H 1.09001 * 109.87617 * 121.45028 * 22 21 20 39 39 H 1.08991 * 109.87621 * 242.60717 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9784 0.5858 -1.2608 6 6 4.1659 -0.7668 -1.3472 7 1 3.8869 -1.2943 -2.2473 8 6 4.7159 -1.4623 -0.2758 9 7 4.5142 -2.7551 -0.1591 10 14 5.7413 -0.5582 0.9972 11 1 4.8823 -0.1835 2.1492 12 1 6.8399 -1.4409 1.4655 13 1 6.3166 0.6682 0.3890 14 6 4.2012 1.3670 -2.3362 15 8 4.0348 2.5697 -2.2593 16 6 4.6450 0.7661 -3.6016 17 6 4.8655 1.5378 -4.6637 18 6 5.3201 0.9215 -5.9617 19 1 6.3434 1.2201 -6.1893 20 6 4.3661 1.3171 -7.1175 21 6 4.5811 0.1618 -8.1252 22 6 5.1601 -0.9823 -7.2705 23 8 5.2095 -0.5172 -5.9112 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8464 -0.8901 29 1 3.8496 0.5542 0.8323 30 1 3.9783 2.1749 0.1079 31 1 4.8981 -3.2402 0.5880 32 1 4.7930 -0.3016 -3.6698 33 1 4.7178 2.6055 -4.5955 34 1 4.6582 2.2727 -7.5530 35 1 3.3318 1.3472 -6.7750 36 1 5.2904 0.4571 -8.8984 37 1 3.6324 -0.1374 -8.5707 38 1 4.5159 -1.8588 -7.3391 39 1 6.1643 -1.2300 -7.6142 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819564134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:20 Heat of formation + Delta-G solvation = -114.423194 kcal Electronic energy + Delta-G solvation = -21208.930314 eV Core-core repulsion = 17924.120299 eV Total energy + Delta-G solvation = -3284.810015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87913 -40.25875 -38.64182 -36.75099 -34.45673 -33.94773 -33.00129 -31.32687 -29.31588 -27.28562 -26.79176 -25.10777 -23.81892 -22.30442 -21.52792 -20.36419 -18.66167 -18.41006 -17.58038 -17.39487 -17.16613 -16.60418 -16.41235 -16.12521 -15.87320 -15.59300 -15.34640 -14.64005 -14.50718 -14.40707 -13.91247 -13.60107 -13.32238 -13.16086 -12.94262 -12.66901 -12.51095 -12.41235 -12.31822 -12.16735 -11.93732 -11.74316 -11.58442 -11.10593 -10.76678 -10.64285 -10.43700 -10.15773 -9.70384 -8.46173 -6.03178 0.53372 1.20581 1.31837 1.41644 2.20266 2.42896 2.60813 2.90075 2.92643 3.15271 3.64390 3.83106 4.03305 4.07075 4.12680 4.21757 4.31727 4.35085 4.42077 4.43198 4.49920 4.53246 4.56938 4.74396 4.80379 4.82951 4.84299 4.88708 4.96519 5.12555 5.26032 5.39687 5.48987 5.64866 6.07992 6.11432 6.25324 6.37425 6.99259 7.41743 7.76071 8.68753 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.005831 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.644175 B = 4800.774361 C = 5270.717319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.061 3.939 4 C 0.090 3.910 5 N -0.453 5.453 6 C -0.325 4.325 7 H 0.071 0.929 8 C 0.033 3.967 9 N -0.892 5.892 10 Si 0.925 3.075 11 H -0.256 1.256 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.494 3.506 15 O -0.625 6.625 16 C -0.176 4.176 17 C -0.092 4.092 18 C 0.100 3.900 19 H 0.103 0.897 20 C -0.140 4.140 21 C -0.145 4.145 22 C 0.034 3.966 23 O -0.404 6.404 24 H 0.087 0.913 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.278 0.722 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 6.786 -9.962 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.016 4.016 4 C -0.033 4.033 5 N -0.171 5.171 6 C -0.453 4.453 7 H 0.089 0.911 8 C -0.171 4.171 9 N -0.529 5.529 10 Si 0.750 3.250 11 H -0.182 1.182 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.287 3.713 15 O -0.514 6.514 16 C -0.197 4.197 17 C -0.113 4.113 18 C 0.043 3.957 19 H 0.120 0.880 20 C -0.177 4.177 21 C -0.183 4.183 22 C -0.042 4.042 23 O -0.325 6.325 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.155 0.845 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.585 6.837 -9.581 11.876 hybrid contribution 0.174 -0.024 0.723 0.744 sum -1.411 6.813 -8.858 11.263 Atomic orbital electron populations 1.22871 0.80397 1.03176 1.00478 1.88146 1.20747 1.27664 1.95359 1.22793 0.93122 0.85036 1.00676 1.21924 0.94424 0.99104 0.87856 1.43598 1.57098 1.06898 1.09536 1.18677 1.41977 0.80771 1.03866 0.91079 1.25835 0.96580 0.95696 0.98994 1.69824 1.41713 1.09537 1.31808 0.86175 0.79469 0.79289 0.80078 1.18193 1.20703 1.19187 1.18989 0.80331 0.85591 0.86399 1.90566 1.59474 1.15223 1.86152 1.22570 1.03277 1.01223 0.92616 1.23651 0.94914 0.99869 0.92833 1.22263 0.99978 0.80726 0.92699 0.87976 1.23107 0.99612 1.00662 0.94336 1.22933 1.03107 0.93959 0.98268 1.23387 1.01422 0.98266 0.81166 1.88984 1.95210 1.20890 1.27370 0.89463 0.92308 0.94126 0.90085 0.94062 0.91235 0.88948 0.91227 0.86286 0.84456 0.87243 0.91510 0.88130 0.89485 0.89993 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.11 16 2 O -0.40 -17.68 10.38 -148.98 -1.55 -19.23 16 3 C 0.06 2.47 6.26 71.98 0.45 2.92 16 4 C 0.09 4.12 4.46 86.38 0.38 4.51 16 5 N -0.45 -23.54 2.13 -639.81 -1.36 -24.91 16 6 C -0.33 -18.51 8.58 84.12 0.72 -17.79 16 7 H 0.07 4.44 6.95 -2.91 -0.02 4.42 16 8 C 0.03 1.88 5.29 84.97 0.45 2.32 16 9 N -0.89 -52.42 13.95 21.69 0.30 -52.11 16 10 Si 0.92 43.82 25.05 68.60 1.72 45.54 16 11 H -0.26 -11.31 6.68 99.48 0.66 -10.65 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.49 24.91 7.57 86.53 0.65 25.57 16 15 O -0.62 -32.05 15.85 -4.22 -0.07 -32.12 16 16 C -0.18 -8.00 8.65 23.40 0.20 -7.80 16 17 C -0.09 -3.32 9.12 24.54 0.22 -3.10 16 18 C 0.10 2.83 3.88 30.53 0.12 2.95 16 19 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 20 C -0.14 -2.90 6.57 31.89 0.21 -2.69 16 21 C -0.15 -2.48 7.01 31.59 0.22 -2.25 16 22 C 0.03 0.79 7.70 72.36 0.56 1.35 16 23 O -0.40 -13.65 9.81 -148.98 -1.46 -15.11 16 24 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.07 3.27 3.49 -2.39 -0.01 3.26 16 30 H 0.09 3.99 7.52 -2.39 -0.02 3.97 16 31 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.12 5.92 5.51 -2.91 -0.02 5.90 16 33 H 0.14 4.71 7.49 -2.91 -0.02 4.69 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.58 8.05 -2.39 -0.02 1.56 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -71.23 321.04 4.02 -67.22 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.99 Total: 22.62 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.44 Total: 8.10 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -1.06 Total: -77.02 kcal Atomic # 8 Polarization: -63.38 SS G_CDS: -3.07 Total: -66.45 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.72 Total: 45.54 kcal Total: -71.23 4.02 -67.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819564134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.208 kcal (2) G-P(sol) polarization free energy of solvation -71.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds