Wall clock time and date at job start Mon Mar 30 2020 05:47:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47074 * 2 1
4 4 C 1.50699 * 109.47175 * 239.99536 * 2 1 3
5 5 H 1.07996 * 120.00041 * 245.37531 * 4 2 1
6 6 C 1.37879 * 120.00040 * 65.38571 * 4 2 1
7 7 N 1.31505 * 120.00055 * 184.88901 * 6 4 2
8 8 Si 1.86801 * 119.99829 * 5.15649 * 6 4 2
9 9 H 1.48507 * 109.46998 * 269.72922 * 8 6 4
10 10 H 1.48499 * 109.47175 * 29.72656 * 8 6 4
11 11 H 1.48497 * 109.47047 * 149.72923 * 8 6 4
12 12 C 1.50703 * 109.46913 * 119.99725 * 2 1 3
13 13 O 1.21281 * 119.99893 * 120.00166 * 12 2 1
14 14 N 1.34781 * 119.99867 * 300.00065 * 12 2 1
15 15 N 1.40102 * 119.99844 * 180.02562 * 14 12 2
16 16 C 1.34771 * 119.99925 * 180.02562 * 15 14 12
17 17 O 1.21593 * 119.99922 * 180.02562 * 16 15 14
18 18 N 1.34771 * 120.00110 * 359.97438 * 16 15 14
19 19 C 1.46503 * 120.00096 * 179.97438 * 18 16 15
20 20 C 1.54266 * 110.03275 * 272.91049 * 19 18 16
21 21 C 1.54970 * 104.15848 * 217.13337 * 20 19 18
22 22 C 1.54889 * 102.77711 * 37.89256 * 21 20 19
23 23 C 1.53878 * 110.03325 * 155.69276 * 19 18 16
24 24 H 1.08997 * 109.47139 * 174.99054 * 1 2 3
25 25 H 1.09000 * 109.47363 * 294.99222 * 1 2 3
26 26 H 1.09003 * 109.47063 * 54.99304 * 1 2 3
27 27 H 0.97006 * 120.00256 * 355.26301 * 7 6 4
28 28 H 0.97000 * 120.00078 * 359.97438 * 14 12 2
29 29 H 0.97001 * 120.00097 * 0.02562 * 15 14 12
30 30 H 0.96995 * 120.00168 * 0.02562 * 18 16 15
31 31 H 1.09004 * 110.01649 * 34.30305 * 19 18 16
32 32 H 1.08994 * 110.48766 * 335.78265 * 20 19 18
33 33 H 1.09000 * 110.48705 * 98.42829 * 20 19 18
34 34 H 1.08991 * 110.72030 * 279.57341 * 21 20 19
35 35 H 1.09000 * 110.91899 * 156.29934 * 21 20 19
36 36 H 1.08997 * 110.48517 * 203.40618 * 22 21 20
37 37 H 1.08999 * 110.60197 * 80.81310 * 22 21 20
38 38 H 1.08995 * 110.03202 * 238.57054 * 23 19 18
39 39 H 1.09000 * 110.02939 * 0.02562 * 23 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 -1.2304
5 1 2.5797 -1.6364 -1.1336
6 6 1.7932 -0.1784 -2.4797
7 7 2.1464 -0.8449 -3.5569
8 14 0.9744 1.4928 -2.6419
9 1 -0.4985 1.3174 -2.7142
10 1 1.3161 2.3280 -1.4626
11 1 1.4546 2.1613 -3.8779
12 6 2.0323 -0.7104 1.2305
13 8 2.7296 -1.6964 1.1193
14 7 1.7066 -0.2498 2.4546
15 7 2.1740 -0.9099 3.5986
16 6 1.8480 -0.4497 4.8226
17 8 2.2540 -1.0223 5.8155
18 7 1.0727 0.6458 4.9462
19 6 0.7178 1.1457 6.2768
20 6 -0.5532 0.4354 6.7865
21 6 -1.3271 1.5423 7.5463
22 6 -1.0773 2.7965 6.6724
23 6 0.3851 2.6463 6.2046
24 1 -0.3633 -1.0237 -0.0897
25 1 -0.3634 0.4342 0.9314
26 1 -0.3633 0.5896 -0.8418
27 1 2.6362 -1.6780 -3.4730
28 1 1.1493 0.5391 2.5436
29 1 2.7323 -1.6981 3.5097
30 1 0.7491 1.1028 4.1542
31 1 1.5423 0.9790 6.9701
32 1 -1.1438 0.0631 5.9495
33 1 -0.2903 -0.3792 7.4614
34 1 -0.9183 1.6811 8.5471
35 1 -2.3911 1.3104 7.5941
36 1 -1.1972 3.7039 7.2643
37 1 -1.7523 2.8083 5.8167
38 1 1.0474 3.2078 6.8635
39 1 0.4872 3.0025 5.1795
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000824342484.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:47:21
Heat of formation + Delta-G solvation = -44.941756 kcal
Electronic energy + Delta-G solvation = -20797.344583 eV
Core-core repulsion = 17547.840260 eV
Total energy + Delta-G solvation = -3249.504322 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.51604 -39.07362 -37.92632 -35.40430 -34.03880 -33.58706 -31.67064 -29.96078
-29.03809 -27.62808 -25.00071 -23.04035 -21.82405 -21.01768 -20.55943 -19.90545
-18.91050 -17.49698 -17.11461 -16.23183 -15.91760 -15.61442 -15.25617 -14.87113
-14.41999 -14.20154 -13.85326 -13.67668 -13.37628 -12.95748 -12.41146 -12.04425
-11.84860 -11.76642 -11.48678 -11.42842 -11.36306 -11.09996 -10.94438 -10.89852
-10.72030 -10.48681 -10.33419 -9.90830 -9.29569 -9.11986 -8.77285 -8.54121
-8.04364 -6.53317 -4.17563 2.14102 2.95429 2.97291 3.24479 3.30403
3.37059 3.47019 4.22239 4.32779 4.38068 4.56657 4.92615 5.08639
5.14655 5.20603 5.21734 5.24131 5.33873 5.45965 5.49721 5.59732
5.73875 5.85919 5.93386 5.97400 6.01301 6.10450 6.27516 6.35442
6.52730 6.69161 6.77867 7.03059 7.50246 7.74046 7.98291 8.36725
8.42483 8.87028 8.90638 9.54384 10.88991
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.024943 B = 0.004326 C = 0.003836
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1122.297212 B = 6471.225123 C = 7296.664646
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.009 3.991
3 H 0.058 0.942
4 C -0.586 4.586
5 H 0.077 0.923
6 C 0.028 3.972
7 N -0.907 5.907
8 Si 1.055 2.945
9 H -0.282 1.282
10 H -0.280 1.280
11 H -0.288 1.288
12 C 0.530 3.470
13 O -0.525 6.525
14 N -0.549 5.549
15 N -0.533 5.533
16 C 0.711 3.289
17 O -0.586 6.586
18 N -0.740 5.740
19 C 0.158 3.842
20 C -0.137 4.137
21 C -0.124 4.124
22 C -0.124 4.124
23 C -0.133 4.133
24 H 0.059 0.941
25 H 0.029 0.971
26 H 0.056 0.944
27 H 0.271 0.729
28 H 0.412 0.588
29 H 0.441 0.559
30 H 0.392 0.608
31 H 0.093 0.907
32 H 0.071 0.929
33 H 0.072 0.928
34 H 0.068 0.932
35 H 0.068 0.932
36 H 0.067 0.933
37 H 0.068 0.932
38 H 0.076 0.924
39 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.208 10.129 19.246 23.246
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.015 4.015
3 H 0.076 0.924
4 C -0.624 4.624
5 H 0.095 0.905
6 C -0.177 4.177
7 N -0.541 5.541
8 Si 0.884 3.116
9 H -0.209 1.209
10 H -0.206 1.206
11 H -0.214 1.214
12 C 0.318 3.682
13 O -0.397 6.397
14 N -0.304 5.304
15 N -0.287 5.287
16 C 0.410 3.590
17 O -0.461 6.461
18 N -0.398 5.398
19 C 0.053 3.947
20 C -0.176 4.176
21 C -0.162 4.162
22 C -0.162 4.162
23 C -0.171 4.171
24 H 0.078 0.922
25 H 0.048 0.952
26 H 0.075 0.925
27 H 0.081 0.919
28 H 0.252 0.748
29 H 0.286 0.714
30 H 0.227 0.773
31 H 0.111 0.889
32 H 0.090 0.910
33 H 0.090 0.910
34 H 0.087 0.913
35 H 0.087 0.913
36 H 0.086 0.914
37 H 0.087 0.913
38 H 0.095 0.905
39 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -8.025 10.164 18.810 22.837
hybrid contribution 0.379 -0.863 0.669 1.156
sum -7.646 9.301 19.479 22.900
Atomic orbital electron populations
1.22157 0.96869 1.02155 0.99252 1.19396 0.93625 0.97678 0.90778
0.92414 1.22009 1.39993 1.11069 0.89354 0.90487 1.25790 0.96639
1.03491 0.91767 1.70772 1.36227 1.16992 1.30119 0.83866 0.76313
0.75543 0.75866 1.20895 1.20572 1.21407 1.21982 0.79244 0.84912
0.82014 1.90610 1.37239 1.26275 1.85556 1.45723 1.55586 1.30936
0.98175 1.44496 1.55805 1.31976 0.96383 1.15721 0.79644 0.81291
0.82315 1.90986 1.60304 1.60669 1.34142 1.45348 1.55089 1.30179
1.09180 1.21540 0.97620 0.92443 0.83116 1.22847 0.96070 0.98256
1.00408 1.22488 1.00250 0.94715 0.98769 1.22360 0.95862 0.98266
0.99716 1.22461 0.97388 0.94850 1.02411 0.92204 0.95159 0.92498
0.91901 0.74750 0.71397 0.77255 0.88924 0.91047 0.90958 0.91298
0.91343 0.91385 0.91334 0.90535 0.90896
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.69 8.73 37.16 0.32 -2.36 16
2 C 0.01 0.19 2.22 -92.92 -0.21 -0.02 16
3 H 0.06 1.17 6.64 -51.93 -0.34 0.83 16
4 C -0.59 -16.07 8.72 -34.44 -0.30 -16.37 16
5 H 0.08 2.42 7.00 -52.49 -0.37 2.05 16
6 C 0.03 0.77 5.43 -17.82 -0.10 0.68 16
7 N -0.91 -27.37 13.70 55.43 0.76 -26.61 16
8 Si 1.05 23.35 25.28 -169.99 -4.30 19.06 16
9 H -0.28 -5.85 6.82 56.52 0.39 -5.46 16
10 H -0.28 -5.45 6.35 56.52 0.36 -5.09 16
11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16
12 C 0.53 10.88 7.27 -10.98 -0.08 10.80 16
13 O -0.53 -12.98 15.31 5.56 0.09 -12.89 16
14 N -0.55 -8.44 6.12 31.22 0.19 -8.24 16
15 N -0.53 -8.28 6.26 27.63 0.17 -8.11 16
16 C 0.71 10.48 8.67 -86.93 -0.75 9.73 16
17 O -0.59 -10.43 16.84 5.28 0.09 -10.34 16
18 N -0.74 -8.02 5.00 -57.58 -0.29 -8.31 16
19 C 0.16 1.49 3.23 -66.81 -0.22 1.27 16
20 C -0.14 -1.23 6.54 -25.03 -0.16 -1.39 16
21 C -0.12 -0.84 6.91 -24.70 -0.17 -1.01 16
22 C -0.12 -0.76 6.83 -25.07 -0.17 -0.93 16
23 C -0.13 -0.91 6.57 -25.61 -0.17 -1.08 16
24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
25 H 0.03 0.41 7.43 -51.93 -0.39 0.02 16
26 H 0.06 1.06 4.41 -51.93 -0.23 0.83 16
27 H 0.27 8.27 8.72 -40.82 -0.36 7.91 16
28 H 0.41 4.82 6.06 -182.60 -1.11 3.72 16
29 H 0.44 7.39 8.10 -182.60 -1.48 5.91 16
30 H 0.39 3.46 6.23 -40.82 -0.25 3.20 16
31 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16
32 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16
33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
39 H 0.07 0.46 7.61 -51.93 -0.40 0.07 16
LS Contribution 314.73 15.07 4.74 4.74
Total: -1.00 -33.52 314.73 -8.09 -41.61
By element:
Atomic # 1 Polarization: 17.32 SS G_CDS: -7.54 Total: 9.78 kcal
Atomic # 6 Polarization: 1.32 SS G_CDS: -2.00 Total: -0.68 kcal
Atomic # 7 Polarization: -52.11 SS G_CDS: 0.84 Total: -51.28 kcal
Atomic # 8 Polarization: -23.41 SS G_CDS: 0.17 Total: -23.23 kcal
Atomic # 14 Polarization: 23.35 SS G_CDS: -4.30 Total: 19.06 kcal
Total LS contribution 4.74 Total: 4.74 kcal
Total: -33.52 -8.09 -41.61 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000824342484.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.332 kcal
(2) G-P(sol) polarization free energy of solvation -33.518 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.850 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.942 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds