Wall clock time and date at job start Mon Mar 30 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47074 * 2 1 4 4 C 1.50699 * 109.47175 * 239.99536 * 2 1 3 5 5 H 1.07996 * 120.00041 * 245.37531 * 4 2 1 6 6 C 1.37879 * 120.00040 * 65.38571 * 4 2 1 7 7 N 1.31505 * 120.00055 * 184.88901 * 6 4 2 8 8 Si 1.86801 * 119.99829 * 5.15649 * 6 4 2 9 9 H 1.48507 * 109.46998 * 269.72922 * 8 6 4 10 10 H 1.48499 * 109.47175 * 29.72656 * 8 6 4 11 11 H 1.48497 * 109.47047 * 149.72923 * 8 6 4 12 12 C 1.50703 * 109.46913 * 119.99725 * 2 1 3 13 13 O 1.21281 * 119.99893 * 120.00166 * 12 2 1 14 14 N 1.34781 * 119.99867 * 300.00065 * 12 2 1 15 15 N 1.40102 * 119.99844 * 180.02562 * 14 12 2 16 16 C 1.34771 * 119.99925 * 180.02562 * 15 14 12 17 17 O 1.21593 * 119.99922 * 180.02562 * 16 15 14 18 18 N 1.34771 * 120.00110 * 359.97438 * 16 15 14 19 19 C 1.46503 * 120.00096 * 179.97438 * 18 16 15 20 20 C 1.54266 * 110.03275 * 272.91049 * 19 18 16 21 21 C 1.54970 * 104.15848 * 217.13337 * 20 19 18 22 22 C 1.54889 * 102.77711 * 37.89256 * 21 20 19 23 23 C 1.53878 * 110.03325 * 155.69276 * 19 18 16 24 24 H 1.08997 * 109.47139 * 174.99054 * 1 2 3 25 25 H 1.09000 * 109.47363 * 294.99222 * 1 2 3 26 26 H 1.09003 * 109.47063 * 54.99304 * 1 2 3 27 27 H 0.97006 * 120.00256 * 355.26301 * 7 6 4 28 28 H 0.97000 * 120.00078 * 359.97438 * 14 12 2 29 29 H 0.97001 * 120.00097 * 0.02562 * 15 14 12 30 30 H 0.96995 * 120.00168 * 0.02562 * 18 16 15 31 31 H 1.09004 * 110.01649 * 34.30305 * 19 18 16 32 32 H 1.08994 * 110.48766 * 335.78265 * 20 19 18 33 33 H 1.09000 * 110.48705 * 98.42829 * 20 19 18 34 34 H 1.08991 * 110.72030 * 279.57341 * 21 20 19 35 35 H 1.09000 * 110.91899 * 156.29934 * 21 20 19 36 36 H 1.08997 * 110.48517 * 203.40618 * 22 21 20 37 37 H 1.08999 * 110.60197 * 80.81310 * 22 21 20 38 38 H 1.08995 * 110.03202 * 238.57054 * 23 19 18 39 39 H 1.09000 * 110.02939 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5797 -1.6364 -1.1336 6 6 1.7932 -0.1784 -2.4797 7 7 2.1464 -0.8449 -3.5569 8 14 0.9744 1.4928 -2.6419 9 1 -0.4985 1.3174 -2.7142 10 1 1.3161 2.3280 -1.4626 11 1 1.4546 2.1613 -3.8779 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4546 15 7 2.1740 -0.9099 3.5986 16 6 1.8480 -0.4497 4.8226 17 8 2.2540 -1.0223 5.8155 18 7 1.0727 0.6458 4.9462 19 6 0.7178 1.1457 6.2768 20 6 -0.5532 0.4354 6.7865 21 6 -1.3271 1.5423 7.5463 22 6 -1.0773 2.7965 6.6724 23 6 0.3851 2.6463 6.2046 24 1 -0.3633 -1.0237 -0.0897 25 1 -0.3634 0.4342 0.9314 26 1 -0.3633 0.5896 -0.8418 27 1 2.6362 -1.6780 -3.4730 28 1 1.1493 0.5391 2.5436 29 1 2.7323 -1.6981 3.5097 30 1 0.7491 1.1028 4.1542 31 1 1.5423 0.9790 6.9701 32 1 -1.1438 0.0631 5.9495 33 1 -0.2903 -0.3792 7.4614 34 1 -0.9183 1.6811 8.5471 35 1 -2.3911 1.3104 7.5941 36 1 -1.1972 3.7039 7.2643 37 1 -1.7523 2.8083 5.8167 38 1 1.0474 3.2078 6.8635 39 1 0.4872 3.0025 5.1795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824342484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:21 Heat of formation + Delta-G solvation = -44.941756 kcal Electronic energy + Delta-G solvation = -20797.344583 eV Core-core repulsion = 17547.840260 eV Total energy + Delta-G solvation = -3249.504322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51604 -39.07362 -37.92632 -35.40430 -34.03880 -33.58706 -31.67064 -29.96078 -29.03809 -27.62808 -25.00071 -23.04035 -21.82405 -21.01768 -20.55943 -19.90545 -18.91050 -17.49698 -17.11461 -16.23183 -15.91760 -15.61442 -15.25617 -14.87113 -14.41999 -14.20154 -13.85326 -13.67668 -13.37628 -12.95748 -12.41146 -12.04425 -11.84860 -11.76642 -11.48678 -11.42842 -11.36306 -11.09996 -10.94438 -10.89852 -10.72030 -10.48681 -10.33419 -9.90830 -9.29569 -9.11986 -8.77285 -8.54121 -8.04364 -6.53317 -4.17563 2.14102 2.95429 2.97291 3.24479 3.30403 3.37059 3.47019 4.22239 4.32779 4.38068 4.56657 4.92615 5.08639 5.14655 5.20603 5.21734 5.24131 5.33873 5.45965 5.49721 5.59732 5.73875 5.85919 5.93386 5.97400 6.01301 6.10450 6.27516 6.35442 6.52730 6.69161 6.77867 7.03059 7.50246 7.74046 7.98291 8.36725 8.42483 8.87028 8.90638 9.54384 10.88991 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.004326 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.297212 B = 6471.225123 C = 7296.664646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 H 0.058 0.942 4 C -0.586 4.586 5 H 0.077 0.923 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 1.055 2.945 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.288 1.288 12 C 0.530 3.470 13 O -0.525 6.525 14 N -0.549 5.549 15 N -0.533 5.533 16 C 0.711 3.289 17 O -0.586 6.586 18 N -0.740 5.740 19 C 0.158 3.842 20 C -0.137 4.137 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.133 4.133 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.056 0.944 27 H 0.271 0.729 28 H 0.412 0.588 29 H 0.441 0.559 30 H 0.392 0.608 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 10.129 19.246 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 H 0.076 0.924 4 C -0.624 4.624 5 H 0.095 0.905 6 C -0.177 4.177 7 N -0.541 5.541 8 Si 0.884 3.116 9 H -0.209 1.209 10 H -0.206 1.206 11 H -0.214 1.214 12 C 0.318 3.682 13 O -0.397 6.397 14 N -0.304 5.304 15 N -0.287 5.287 16 C 0.410 3.590 17 O -0.461 6.461 18 N -0.398 5.398 19 C 0.053 3.947 20 C -0.176 4.176 21 C -0.162 4.162 22 C -0.162 4.162 23 C -0.171 4.171 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.252 0.748 29 H 0.286 0.714 30 H 0.227 0.773 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.025 10.164 18.810 22.837 hybrid contribution 0.379 -0.863 0.669 1.156 sum -7.646 9.301 19.479 22.900 Atomic orbital electron populations 1.22157 0.96869 1.02155 0.99252 1.19396 0.93625 0.97678 0.90778 0.92414 1.22009 1.39993 1.11069 0.89354 0.90487 1.25790 0.96639 1.03491 0.91767 1.70772 1.36227 1.16992 1.30119 0.83866 0.76313 0.75543 0.75866 1.20895 1.20572 1.21407 1.21982 0.79244 0.84912 0.82014 1.90610 1.37239 1.26275 1.85556 1.45723 1.55586 1.30936 0.98175 1.44496 1.55805 1.31976 0.96383 1.15721 0.79644 0.81291 0.82315 1.90986 1.60304 1.60669 1.34142 1.45348 1.55089 1.30179 1.09180 1.21540 0.97620 0.92443 0.83116 1.22847 0.96070 0.98256 1.00408 1.22488 1.00250 0.94715 0.98769 1.22360 0.95862 0.98266 0.99716 1.22461 0.97388 0.94850 1.02411 0.92204 0.95159 0.92498 0.91901 0.74750 0.71397 0.77255 0.88924 0.91047 0.90958 0.91298 0.91343 0.91385 0.91334 0.90535 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.73 37.16 0.32 -2.36 16 2 C 0.01 0.19 2.22 -92.92 -0.21 -0.02 16 3 H 0.06 1.17 6.64 -51.93 -0.34 0.83 16 4 C -0.59 -16.07 8.72 -34.44 -0.30 -16.37 16 5 H 0.08 2.42 7.00 -52.49 -0.37 2.05 16 6 C 0.03 0.77 5.43 -17.82 -0.10 0.68 16 7 N -0.91 -27.37 13.70 55.43 0.76 -26.61 16 8 Si 1.05 23.35 25.28 -169.99 -4.30 19.06 16 9 H -0.28 -5.85 6.82 56.52 0.39 -5.46 16 10 H -0.28 -5.45 6.35 56.52 0.36 -5.09 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.53 10.88 7.27 -10.98 -0.08 10.80 16 13 O -0.53 -12.98 15.31 5.56 0.09 -12.89 16 14 N -0.55 -8.44 6.12 31.22 0.19 -8.24 16 15 N -0.53 -8.28 6.26 27.63 0.17 -8.11 16 16 C 0.71 10.48 8.67 -86.93 -0.75 9.73 16 17 O -0.59 -10.43 16.84 5.28 0.09 -10.34 16 18 N -0.74 -8.02 5.00 -57.58 -0.29 -8.31 16 19 C 0.16 1.49 3.23 -66.81 -0.22 1.27 16 20 C -0.14 -1.23 6.54 -25.03 -0.16 -1.39 16 21 C -0.12 -0.84 6.91 -24.70 -0.17 -1.01 16 22 C -0.12 -0.76 6.83 -25.07 -0.17 -0.93 16 23 C -0.13 -0.91 6.57 -25.61 -0.17 -1.08 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.03 0.41 7.43 -51.93 -0.39 0.02 16 26 H 0.06 1.06 4.41 -51.93 -0.23 0.83 16 27 H 0.27 8.27 8.72 -40.82 -0.36 7.91 16 28 H 0.41 4.82 6.06 -182.60 -1.11 3.72 16 29 H 0.44 7.39 8.10 -182.60 -1.48 5.91 16 30 H 0.39 3.46 6.23 -40.82 -0.25 3.20 16 31 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 32 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.46 7.61 -51.93 -0.40 0.07 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -33.52 314.73 -8.09 -41.61 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.54 Total: 9.78 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.00 Total: -0.68 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.84 Total: -51.28 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.17 Total: -23.23 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.30 Total: 19.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.52 -8.09 -41.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824342484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.332 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds