Wall clock time and date at job start Mon Mar 30 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47074 * 2 1 4 4 C 1.50699 * 109.47175 * 239.99536 * 2 1 3 5 5 H 1.07996 * 120.00041 * 245.37531 * 4 2 1 6 6 C 1.37879 * 120.00040 * 65.38571 * 4 2 1 7 7 N 1.31505 * 120.00055 * 184.88901 * 6 4 2 8 8 Si 1.86801 * 119.99829 * 5.15649 * 6 4 2 9 9 H 1.48507 * 109.46998 * 269.72922 * 8 6 4 10 10 H 1.48499 * 109.47175 * 29.72656 * 8 6 4 11 11 H 1.48497 * 109.47047 * 149.72923 * 8 6 4 12 12 C 1.50703 * 109.46913 * 119.99725 * 2 1 3 13 13 O 1.21281 * 119.99893 * 120.00166 * 12 2 1 14 14 N 1.34781 * 119.99867 * 300.00065 * 12 2 1 15 15 N 1.40102 * 119.99844 * 180.02562 * 14 12 2 16 16 C 1.34771 * 119.99925 * 180.02562 * 15 14 12 17 17 O 1.21593 * 119.99922 * 180.02562 * 16 15 14 18 18 N 1.34771 * 120.00110 * 359.97438 * 16 15 14 19 19 C 1.46503 * 120.00096 * 179.97438 * 18 16 15 20 20 C 1.54266 * 110.03275 * 272.91049 * 19 18 16 21 21 C 1.54970 * 104.15848 * 217.13337 * 20 19 18 22 22 C 1.54889 * 102.77711 * 37.89256 * 21 20 19 23 23 C 1.53878 * 110.03325 * 155.69276 * 19 18 16 24 24 H 1.08997 * 109.47139 * 174.99054 * 1 2 3 25 25 H 1.09000 * 109.47363 * 294.99222 * 1 2 3 26 26 H 1.09003 * 109.47063 * 54.99304 * 1 2 3 27 27 H 0.97006 * 120.00256 * 355.26301 * 7 6 4 28 28 H 0.97000 * 120.00078 * 359.97438 * 14 12 2 29 29 H 0.97001 * 120.00097 * 0.02562 * 15 14 12 30 30 H 0.96995 * 120.00168 * 0.02562 * 18 16 15 31 31 H 1.09004 * 110.01649 * 34.30305 * 19 18 16 32 32 H 1.08994 * 110.48766 * 335.78265 * 20 19 18 33 33 H 1.09000 * 110.48705 * 98.42829 * 20 19 18 34 34 H 1.08991 * 110.72030 * 279.57341 * 21 20 19 35 35 H 1.09000 * 110.91899 * 156.29934 * 21 20 19 36 36 H 1.08997 * 110.48517 * 203.40618 * 22 21 20 37 37 H 1.08999 * 110.60197 * 80.81310 * 22 21 20 38 38 H 1.08995 * 110.03202 * 238.57054 * 23 19 18 39 39 H 1.09000 * 110.02939 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5797 -1.6364 -1.1336 6 6 1.7932 -0.1784 -2.4797 7 7 2.1464 -0.8449 -3.5569 8 14 0.9744 1.4928 -2.6419 9 1 -0.4985 1.3174 -2.7142 10 1 1.3161 2.3280 -1.4626 11 1 1.4546 2.1613 -3.8779 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4546 15 7 2.1740 -0.9099 3.5986 16 6 1.8480 -0.4497 4.8226 17 8 2.2540 -1.0223 5.8155 18 7 1.0727 0.6458 4.9462 19 6 0.7178 1.1457 6.2768 20 6 -0.5532 0.4354 6.7865 21 6 -1.3271 1.5423 7.5463 22 6 -1.0773 2.7965 6.6724 23 6 0.3851 2.6463 6.2046 24 1 -0.3633 -1.0237 -0.0897 25 1 -0.3634 0.4342 0.9314 26 1 -0.3633 0.5896 -0.8418 27 1 2.6362 -1.6780 -3.4730 28 1 1.1493 0.5391 2.5436 29 1 2.7323 -1.6981 3.5097 30 1 0.7491 1.1028 4.1542 31 1 1.5423 0.9790 6.9701 32 1 -1.1438 0.0631 5.9495 33 1 -0.2903 -0.3792 7.4614 34 1 -0.9183 1.6811 8.5471 35 1 -2.3911 1.3104 7.5941 36 1 -1.1972 3.7039 7.2643 37 1 -1.7523 2.8083 5.8167 38 1 1.0474 3.2078 6.8635 39 1 0.4872 3.0025 5.1795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824342484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:21 Heat of formation + Delta-G solvation = -71.558690 kcal Electronic energy + Delta-G solvation = -20798.498780 eV Core-core repulsion = 17547.840260 eV Total energy + Delta-G solvation = -3250.658519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74033 -40.51312 -38.78473 -36.86152 -35.90327 -34.53612 -33.53954 -31.42224 -29.61551 -28.36566 -26.79690 -24.77347 -22.90090 -21.85414 -21.49097 -21.13053 -20.16103 -19.43516 -18.53928 -17.31446 -17.11777 -16.81050 -16.15943 -16.14614 -15.82223 -15.59845 -15.13541 -14.77645 -14.57191 -14.22778 -13.93375 -13.48862 -13.20858 -13.03993 -12.56686 -12.42296 -12.36599 -12.00270 -11.98337 -11.91756 -11.84015 -11.65033 -11.51620 -11.41512 -10.85516 -10.81418 -10.56684 -10.27881 -9.38401 -8.75454 -6.40270 0.80481 1.48496 1.55240 1.63765 1.77526 1.94497 1.97319 2.57856 3.13713 3.52262 3.64210 3.73897 4.01292 4.12392 4.42768 4.47588 4.53243 4.57337 4.62333 4.65137 4.76705 4.81530 4.92389 5.04548 5.06672 5.13304 5.26635 5.31638 5.34637 5.45247 5.51237 5.51855 5.63454 5.78999 6.05555 6.36059 6.58641 6.66736 7.20521 7.39875 7.46878 8.66129 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.004326 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.297212 B = 6471.225123 C = 7296.664646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.005 3.995 3 H 0.088 0.912 4 C -0.594 4.594 5 H 0.015 0.985 6 C -0.029 4.029 7 N -0.946 5.946 8 Si 1.095 2.905 9 H -0.254 1.254 10 H -0.225 1.225 11 H -0.300 1.300 12 C 0.530 3.470 13 O -0.579 6.579 14 N -0.518 5.518 15 N -0.538 5.538 16 C 0.712 3.288 17 O -0.617 6.617 18 N -0.722 5.722 19 C 0.152 3.848 20 C -0.138 4.138 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.127 4.127 24 H 0.039 0.961 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.246 0.754 28 H 0.434 0.566 29 H 0.433 0.567 30 H 0.406 0.594 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.702 13.989 21.092 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 H 0.105 0.895 4 C -0.633 4.633 5 H 0.034 0.966 6 C -0.225 4.225 7 N -0.582 5.582 8 Si 0.915 3.085 9 H -0.179 1.179 10 H -0.148 1.148 11 H -0.228 1.228 12 C 0.319 3.681 13 O -0.455 6.455 14 N -0.274 5.274 15 N -0.290 5.290 16 C 0.411 3.589 17 O -0.495 6.495 18 N -0.380 5.380 19 C 0.047 3.953 20 C -0.177 4.177 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.165 4.165 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.279 0.721 29 H 0.277 0.723 30 H 0.243 0.757 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.576 14.083 20.734 27.204 hybrid contribution 1.212 -2.161 0.208 2.486 sum -9.365 11.922 20.942 25.853 Atomic orbital electron populations 1.22067 0.93557 1.01787 1.02658 1.19358 0.96058 0.97984 0.88474 0.89464 1.22136 1.39065 1.09343 0.92720 0.96639 1.27629 0.96597 1.07150 0.91104 1.70945 1.38627 1.16905 1.31743 0.83503 0.76851 0.70688 0.77502 1.17913 1.14786 1.22792 1.21762 0.78780 0.84234 0.83326 1.90608 1.39773 1.28681 1.86468 1.45104 1.54442 1.30765 0.97050 1.44575 1.56047 1.31999 0.96424 1.15829 0.79818 0.81888 0.81329 1.90970 1.61632 1.61909 1.34964 1.45306 1.53540 1.28600 1.10540 1.21727 0.97150 0.94545 0.81855 1.22816 0.96110 0.98545 1.00206 1.22480 1.00315 0.94180 0.98832 1.22362 0.95192 0.98237 0.99927 1.22452 0.98170 0.92370 1.03492 0.94195 0.89258 0.91957 0.94475 0.72073 0.72298 0.75667 0.90830 0.91410 0.92853 0.90955 0.90591 0.90011 0.90669 0.89755 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.73 71.98 0.63 -4.01 16 2 C 0.00 0.19 2.22 -12.29 -0.03 0.16 16 3 H 0.09 3.10 6.64 -2.39 -0.02 3.09 16 4 C -0.59 -33.37 8.72 25.60 0.22 -33.15 16 5 H 0.02 1.03 7.00 -2.91 -0.02 1.01 16 6 C -0.03 -1.64 5.43 84.66 0.46 -1.18 16 7 N -0.95 -59.56 13.70 21.45 0.29 -59.27 16 8 Si 1.10 44.25 25.28 68.60 1.73 45.98 16 9 H -0.25 -9.14 6.82 99.48 0.68 -8.46 16 10 H -0.22 -7.09 6.35 99.48 0.63 -6.46 16 11 H -0.30 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.53 21.18 7.27 87.66 0.64 21.82 16 13 O -0.58 -29.52 15.31 -3.03 -0.05 -29.56 16 14 N -0.52 -14.49 6.12 -173.53 -1.06 -15.55 16 15 N -0.54 -16.03 6.26 -184.75 -1.16 -17.18 16 16 C 0.71 19.91 8.67 179.06 1.55 21.47 16 17 O -0.62 -21.77 16.84 -4.01 -0.07 -21.84 16 18 N -0.72 -13.59 5.00 -454.34 -2.27 -15.86 16 19 C 0.15 2.51 3.23 45.72 0.15 2.66 16 20 C -0.14 -2.22 6.54 31.70 0.21 -2.01 16 21 C -0.12 -1.28 6.91 31.91 0.22 -1.06 16 22 C -0.12 -0.97 6.83 31.67 0.22 -0.75 16 23 C -0.13 -1.25 6.57 31.32 0.21 -1.05 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 25 H 0.09 1.84 7.43 -2.39 -0.02 1.83 16 26 H 0.06 1.98 4.41 -2.39 -0.01 1.97 16 27 H 0.25 16.19 8.72 -92.70 -0.81 15.38 16 28 H 0.43 8.02 6.06 -213.32 -1.29 6.73 16 29 H 0.43 14.60 8.10 -213.32 -1.73 12.87 16 30 H 0.41 5.33 6.23 -92.71 -0.58 4.75 16 31 H 0.07 1.53 7.58 -2.38 -0.02 1.51 16 32 H 0.07 1.14 8.05 -2.39 -0.02 1.12 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.09 0.66 7.61 -2.39 -0.02 0.65 16 Total: -1.00 -80.13 314.73 -0.75 -80.89 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -2.65 Total: 29.50 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 4.47 Total: 2.90 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.20 Total: -107.87 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -0.11 Total: -51.40 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.73 Total: 45.98 kcal Total: -80.13 -0.75 -80.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824342484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.327 kcal (2) G-P(sol) polarization free energy of solvation -80.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds