Wall clock time and date at job start Mon Mar 30 2020 05:47:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47074 * 2 1
4 4 C 1.50699 * 109.47175 * 239.99536 * 2 1 3
5 5 H 1.07996 * 120.00041 * 245.37531 * 4 2 1
6 6 C 1.37879 * 120.00040 * 65.38571 * 4 2 1
7 7 N 1.31505 * 120.00055 * 184.88901 * 6 4 2
8 8 Si 1.86801 * 119.99829 * 5.15649 * 6 4 2
9 9 H 1.48507 * 109.46998 * 269.72922 * 8 6 4
10 10 H 1.48499 * 109.47175 * 29.72656 * 8 6 4
11 11 H 1.48497 * 109.47047 * 149.72923 * 8 6 4
12 12 C 1.50703 * 109.46913 * 119.99725 * 2 1 3
13 13 O 1.21281 * 119.99893 * 120.00166 * 12 2 1
14 14 N 1.34781 * 119.99867 * 300.00065 * 12 2 1
15 15 N 1.40102 * 119.99844 * 180.02562 * 14 12 2
16 16 C 1.34771 * 119.99925 * 180.02562 * 15 14 12
17 17 O 1.21593 * 119.99922 * 180.02562 * 16 15 14
18 18 N 1.34771 * 120.00110 * 359.97438 * 16 15 14
19 19 C 1.46503 * 120.00096 * 179.97438 * 18 16 15
20 20 C 1.54266 * 110.03275 * 272.91049 * 19 18 16
21 21 C 1.54970 * 104.15848 * 217.13337 * 20 19 18
22 22 C 1.54889 * 102.77711 * 37.89256 * 21 20 19
23 23 C 1.53878 * 110.03325 * 155.69276 * 19 18 16
24 24 H 1.08997 * 109.47139 * 174.99054 * 1 2 3
25 25 H 1.09000 * 109.47363 * 294.99222 * 1 2 3
26 26 H 1.09003 * 109.47063 * 54.99304 * 1 2 3
27 27 H 0.97006 * 120.00256 * 355.26301 * 7 6 4
28 28 H 0.97000 * 120.00078 * 359.97438 * 14 12 2
29 29 H 0.97001 * 120.00097 * 0.02562 * 15 14 12
30 30 H 0.96995 * 120.00168 * 0.02562 * 18 16 15
31 31 H 1.09004 * 110.01649 * 34.30305 * 19 18 16
32 32 H 1.08994 * 110.48766 * 335.78265 * 20 19 18
33 33 H 1.09000 * 110.48705 * 98.42829 * 20 19 18
34 34 H 1.08991 * 110.72030 * 279.57341 * 21 20 19
35 35 H 1.09000 * 110.91899 * 156.29934 * 21 20 19
36 36 H 1.08997 * 110.48517 * 203.40618 * 22 21 20
37 37 H 1.08999 * 110.60197 * 80.81310 * 22 21 20
38 38 H 1.08995 * 110.03202 * 238.57054 * 23 19 18
39 39 H 1.09000 * 110.02939 * 0.02562 * 23 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 -1.2304
5 1 2.5797 -1.6364 -1.1336
6 6 1.7932 -0.1784 -2.4797
7 7 2.1464 -0.8449 -3.5569
8 14 0.9744 1.4928 -2.6419
9 1 -0.4985 1.3174 -2.7142
10 1 1.3161 2.3280 -1.4626
11 1 1.4546 2.1613 -3.8779
12 6 2.0323 -0.7104 1.2305
13 8 2.7296 -1.6964 1.1193
14 7 1.7066 -0.2498 2.4546
15 7 2.1740 -0.9099 3.5986
16 6 1.8480 -0.4497 4.8226
17 8 2.2540 -1.0223 5.8155
18 7 1.0727 0.6458 4.9462
19 6 0.7178 1.1457 6.2768
20 6 -0.5532 0.4354 6.7865
21 6 -1.3271 1.5423 7.5463
22 6 -1.0773 2.7965 6.6724
23 6 0.3851 2.6463 6.2046
24 1 -0.3633 -1.0237 -0.0897
25 1 -0.3634 0.4342 0.9314
26 1 -0.3633 0.5896 -0.8418
27 1 2.6362 -1.6780 -3.4730
28 1 1.1493 0.5391 2.5436
29 1 2.7323 -1.6981 3.5097
30 1 0.7491 1.1028 4.1542
31 1 1.5423 0.9790 6.9701
32 1 -1.1438 0.0631 5.9495
33 1 -0.2903 -0.3792 7.4614
34 1 -0.9183 1.6811 8.5471
35 1 -2.3911 1.3104 7.5941
36 1 -1.1972 3.7039 7.2643
37 1 -1.7523 2.8083 5.8167
38 1 1.0474 3.2078 6.8635
39 1 0.4872 3.0025 5.1795
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000824342484.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:47:21
Heat of formation + Delta-G solvation = -71.558690 kcal
Electronic energy + Delta-G solvation = -20798.498780 eV
Core-core repulsion = 17547.840260 eV
Total energy + Delta-G solvation = -3250.658519 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.153 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.74033 -40.51312 -38.78473 -36.86152 -35.90327 -34.53612 -33.53954 -31.42224
-29.61551 -28.36566 -26.79690 -24.77347 -22.90090 -21.85414 -21.49097 -21.13053
-20.16103 -19.43516 -18.53928 -17.31446 -17.11777 -16.81050 -16.15943 -16.14614
-15.82223 -15.59845 -15.13541 -14.77645 -14.57191 -14.22778 -13.93375 -13.48862
-13.20858 -13.03993 -12.56686 -12.42296 -12.36599 -12.00270 -11.98337 -11.91756
-11.84015 -11.65033 -11.51620 -11.41512 -10.85516 -10.81418 -10.56684 -10.27881
-9.38401 -8.75454 -6.40270 0.80481 1.48496 1.55240 1.63765 1.77526
1.94497 1.97319 2.57856 3.13713 3.52262 3.64210 3.73897 4.01292
4.12392 4.42768 4.47588 4.53243 4.57337 4.62333 4.65137 4.76705
4.81530 4.92389 5.04548 5.06672 5.13304 5.26635 5.31638 5.34637
5.45247 5.51237 5.51855 5.63454 5.78999 6.05555 6.36059 6.58641
6.66736 7.20521 7.39875 7.46878 8.66129
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.024943 B = 0.004326 C = 0.003836
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1122.297212 B = 6471.225123 C = 7296.664646
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.005 3.995
3 H 0.088 0.912
4 C -0.594 4.594
5 H 0.015 0.985
6 C -0.029 4.029
7 N -0.946 5.946
8 Si 1.095 2.905
9 H -0.254 1.254
10 H -0.225 1.225
11 H -0.300 1.300
12 C 0.530 3.470
13 O -0.579 6.579
14 N -0.518 5.518
15 N -0.538 5.538
16 C 0.712 3.288
17 O -0.617 6.617
18 N -0.722 5.722
19 C 0.152 3.848
20 C -0.138 4.138
21 C -0.120 4.120
22 C -0.120 4.120
23 C -0.127 4.127
24 H 0.039 0.961
25 H 0.089 0.911
26 H 0.062 0.938
27 H 0.246 0.754
28 H 0.434 0.566
29 H 0.433 0.567
30 H 0.406 0.594
31 H 0.073 0.927
32 H 0.067 0.933
33 H 0.053 0.947
34 H 0.072 0.928
35 H 0.075 0.925
36 H 0.081 0.919
37 H 0.075 0.925
38 H 0.084 0.916
39 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.702 13.989 21.092 27.480
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.019 4.019
3 H 0.105 0.895
4 C -0.633 4.633
5 H 0.034 0.966
6 C -0.225 4.225
7 N -0.582 5.582
8 Si 0.915 3.085
9 H -0.179 1.179
10 H -0.148 1.148
11 H -0.228 1.228
12 C 0.319 3.681
13 O -0.455 6.455
14 N -0.274 5.274
15 N -0.290 5.290
16 C 0.411 3.589
17 O -0.495 6.495
18 N -0.380 5.380
19 C 0.047 3.953
20 C -0.177 4.177
21 C -0.158 4.158
22 C -0.157 4.157
23 C -0.165 4.165
24 H 0.058 0.942
25 H 0.107 0.893
26 H 0.080 0.920
27 H 0.055 0.945
28 H 0.279 0.721
29 H 0.277 0.723
30 H 0.243 0.757
31 H 0.092 0.908
32 H 0.086 0.914
33 H 0.071 0.929
34 H 0.090 0.910
35 H 0.094 0.906
36 H 0.100 0.900
37 H 0.093 0.907
38 H 0.102 0.898
39 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -10.576 14.083 20.734 27.204
hybrid contribution 1.212 -2.161 0.208 2.486
sum -9.365 11.922 20.942 25.853
Atomic orbital electron populations
1.22067 0.93557 1.01787 1.02658 1.19358 0.96058 0.97984 0.88474
0.89464 1.22136 1.39065 1.09343 0.92720 0.96639 1.27629 0.96597
1.07150 0.91104 1.70945 1.38627 1.16905 1.31743 0.83503 0.76851
0.70688 0.77502 1.17913 1.14786 1.22792 1.21762 0.78780 0.84234
0.83326 1.90608 1.39773 1.28681 1.86468 1.45104 1.54442 1.30765
0.97050 1.44575 1.56047 1.31999 0.96424 1.15829 0.79818 0.81888
0.81329 1.90970 1.61632 1.61909 1.34964 1.45306 1.53540 1.28600
1.10540 1.21727 0.97150 0.94545 0.81855 1.22816 0.96110 0.98545
1.00206 1.22480 1.00315 0.94180 0.98832 1.22362 0.95192 0.98237
0.99927 1.22452 0.98170 0.92370 1.03492 0.94195 0.89258 0.91957
0.94475 0.72073 0.72298 0.75667 0.90830 0.91410 0.92853 0.90955
0.90591 0.90011 0.90669 0.89755 0.89637
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.64 8.73 71.98 0.63 -4.01 16
2 C 0.00 0.19 2.22 -12.29 -0.03 0.16 16
3 H 0.09 3.10 6.64 -2.39 -0.02 3.09 16
4 C -0.59 -33.37 8.72 25.60 0.22 -33.15 16
5 H 0.02 1.03 7.00 -2.91 -0.02 1.01 16
6 C -0.03 -1.64 5.43 84.66 0.46 -1.18 16
7 N -0.95 -59.56 13.70 21.45 0.29 -59.27 16
8 Si 1.10 44.25 25.28 68.60 1.73 45.98 16
9 H -0.25 -9.14 6.82 99.48 0.68 -8.46 16
10 H -0.22 -7.09 6.35 99.48 0.63 -6.46 16
11 H -0.30 -12.78 7.11 99.48 0.71 -12.07 16
12 C 0.53 21.18 7.27 87.66 0.64 21.82 16
13 O -0.58 -29.52 15.31 -3.03 -0.05 -29.56 16
14 N -0.52 -14.49 6.12 -173.53 -1.06 -15.55 16
15 N -0.54 -16.03 6.26 -184.75 -1.16 -17.18 16
16 C 0.71 19.91 8.67 179.06 1.55 21.47 16
17 O -0.62 -21.77 16.84 -4.01 -0.07 -21.84 16
18 N -0.72 -13.59 5.00 -454.34 -2.27 -15.86 16
19 C 0.15 2.51 3.23 45.72 0.15 2.66 16
20 C -0.14 -2.22 6.54 31.70 0.21 -2.01 16
21 C -0.12 -1.28 6.91 31.91 0.22 -1.06 16
22 C -0.12 -0.97 6.83 31.67 0.22 -0.75 16
23 C -0.13 -1.25 6.57 31.32 0.21 -1.05 16
24 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16
25 H 0.09 1.84 7.43 -2.39 -0.02 1.83 16
26 H 0.06 1.98 4.41 -2.39 -0.01 1.97 16
27 H 0.25 16.19 8.72 -92.70 -0.81 15.38 16
28 H 0.43 8.02 6.06 -213.32 -1.29 6.73 16
29 H 0.43 14.60 8.10 -213.32 -1.73 12.87 16
30 H 0.41 5.33 6.23 -92.71 -0.58 4.75 16
31 H 0.07 1.53 7.58 -2.38 -0.02 1.51 16
32 H 0.07 1.14 8.05 -2.39 -0.02 1.12 16
33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16
34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16
36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16
37 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16
38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
39 H 0.09 0.66 7.61 -2.39 -0.02 0.65 16
Total: -1.00 -80.13 314.73 -0.75 -80.89
By element:
Atomic # 1 Polarization: 32.15 SS G_CDS: -2.65 Total: 29.50 kcal
Atomic # 6 Polarization: -1.57 SS G_CDS: 4.47 Total: 2.90 kcal
Atomic # 7 Polarization: -103.67 SS G_CDS: -4.20 Total: -107.87 kcal
Atomic # 8 Polarization: -51.29 SS G_CDS: -0.11 Total: -51.40 kcal
Atomic # 14 Polarization: 44.25 SS G_CDS: 1.73 Total: 45.98 kcal
Total: -80.13 -0.75 -80.89 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000824342484.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.327 kcal
(2) G-P(sol) polarization free energy of solvation -80.132 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.805 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.886 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.559 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds