Wall clock time and date at job start Mon Mar 30 2020 04:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.47346 * 305.00026 * 6 5 3 8 8 N 1.46497 * 109.47195 * 64.99546 * 6 5 3 9 9 C 1.34774 * 120.00444 * 204.99889 * 8 6 5 10 10 O 1.21282 * 119.99907 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00466 * 180.02562 * 9 8 6 12 12 H 1.09002 * 109.47090 * 59.99722 * 11 9 8 13 13 C 1.53008 * 109.46937 * 300.00349 * 11 9 8 14 14 C 1.50698 * 109.47584 * 180.02562 * 11 9 8 15 15 H 1.08002 * 119.99913 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99964 * 179.97438 * 14 11 9 17 17 N 1.31507 * 120.00182 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47350 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47326 * 119.99790 * 18 16 14 21 21 H 1.48500 * 109.47216 * 240.00071 * 18 16 14 22 22 C 1.52997 * 109.47504 * 184.99949 * 6 5 3 23 23 C 1.53002 * 117.50022 * 248.74910 * 22 6 5 24 24 C 1.52997 * 117.50076 * 180.08715 * 22 6 5 25 25 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 27 27 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 29 29 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 30 30 H 0.97001 * 119.99762 * 25.00311 * 8 6 5 31 31 H 1.09001 * 109.47165 * 59.99977 * 13 11 9 32 32 H 1.09002 * 109.47034 * 179.97438 * 13 11 9 33 33 H 1.08993 * 109.46940 * 299.99660 * 13 11 9 34 34 H 0.97004 * 120.00173 * 179.97438 * 17 16 14 35 35 H 1.09003 * 115.54905 * 34.41348 * 22 6 5 36 36 H 1.09000 * 117.49650 * 359.97438 * 23 22 6 37 37 H 1.09001 * 117.49817 * 145.01411 * 23 22 6 38 38 H 1.08996 * 117.49862 * 214.97497 * 24 22 6 39 39 H 1.08996 * 117.50355 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5375 3.2575 -0.8429 8 7 3.5792 3.3762 1.2506 9 6 3.3824 4.7086 1.2982 10 8 3.5533 5.3827 0.3046 11 6 2.9499 5.3610 2.5860 12 1 3.6997 5.1780 3.3557 13 6 1.6090 4.7732 3.0303 14 6 2.8010 6.8453 2.3720 15 1 3.0000 7.2735 1.4006 16 6 2.4107 7.6567 3.4162 17 7 2.1678 7.1352 4.5988 18 14 2.2268 9.4966 3.1511 19 1 2.5556 9.8290 1.7415 20 1 0.8277 9.9011 3.4410 21 1 3.1503 10.2224 4.0597 22 6 5.5226 2.8237 -0.1274 23 6 6.3067 3.3216 1.0885 24 6 6.1564 4.2161 -0.1445 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 3.9563 0.7806 0.8892 29 1 3.9557 0.7809 -0.8908 30 1 3.4421 2.8370 2.0453 31 1 1.7163 3.6996 3.1850 32 1 1.2964 5.2448 3.9620 33 1 0.8592 4.9563 2.2606 34 1 1.8936 7.7061 5.3336 35 1 5.9853 2.0525 -0.7433 36 1 5.7377 3.5913 1.9782 37 1 7.2853 2.8781 1.2723 38 1 7.0363 4.3609 -0.7713 39 1 5.4887 5.0741 -0.0663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829869543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:08 Heat of formation + Delta-G solvation = -100.626977 kcal Electronic energy + Delta-G solvation = -21590.682026 eV Core-core repulsion = 18306.470260 eV Total energy + Delta-G solvation = -3284.211766 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57518 -39.30132 -36.86124 -36.34691 -33.67258 -33.60696 -31.31417 -29.93561 -27.80679 -25.06923 -24.85183 -22.56104 -22.02112 -20.91548 -19.86946 -19.26765 -17.52708 -16.66202 -16.59261 -16.17644 -15.88783 -15.59187 -15.21018 -14.35790 -14.09303 -13.62603 -13.41357 -12.93004 -12.82871 -12.49240 -12.27708 -12.06358 -11.83732 -11.53741 -11.42900 -11.08189 -10.94194 -10.81072 -10.60790 -10.58283 -10.43148 -10.15444 -10.03168 -9.89226 -9.71295 -8.88528 -8.52760 -8.30575 -8.20964 -5.96985 -3.99275 2.27535 2.66273 3.36303 3.43565 3.52173 3.79768 3.88024 4.17913 4.52902 4.61217 4.74831 5.04000 5.07427 5.15083 5.21231 5.28605 5.33847 5.36639 5.41729 5.52566 5.64517 5.98482 6.02507 6.18112 6.35880 6.40540 6.48665 6.71960 6.79585 6.94829 7.04128 7.18768 7.56777 7.80148 7.83988 8.06236 8.23011 8.53591 9.10083 9.36746 9.66054 11.10748 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.005977 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.183676 B = 4683.300633 C = 5710.651252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.449 3.551 4 O -0.479 6.479 5 C -0.116 4.116 6 C 0.186 3.814 7 H 0.095 0.905 8 N -0.734 5.734 9 C 0.529 3.471 10 O -0.541 6.541 11 C 0.030 3.970 12 H 0.049 0.951 13 C -0.128 4.128 14 C -0.495 4.495 15 H 0.074 0.926 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.174 4.174 23 C -0.174 4.174 24 C -0.180 4.180 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.392 0.608 31 H 0.008 0.992 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.259 0.741 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -16.468 -6.677 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.290 3.710 4 O -0.363 6.363 5 C -0.154 4.154 6 C 0.080 3.920 7 H 0.113 0.887 8 N -0.387 5.387 9 C 0.319 3.681 10 O -0.417 6.417 11 C 0.009 3.991 12 H 0.067 0.933 13 C -0.186 4.186 14 C -0.534 4.534 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.194 4.194 23 C -0.212 4.212 24 C -0.217 4.217 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.226 0.774 31 H 0.027 0.973 32 H 0.109 0.891 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.613 -15.579 -7.235 17.374 hybrid contribution -0.389 0.549 0.337 0.753 sum 2.224 -15.029 -6.898 16.686 Atomic orbital electron populations 1.23221 0.76501 1.03289 1.02766 1.86477 1.23354 1.33904 1.84711 1.23771 0.92213 0.81476 0.73494 1.90810 1.66759 1.35848 1.42911 1.21700 0.87823 0.99532 1.06369 1.20078 0.91737 0.89620 0.90571 0.88666 1.46227 1.71868 1.09103 1.11535 1.21797 0.73708 0.80166 0.92385 1.90451 1.50616 1.63043 1.37607 1.18858 0.95227 0.96079 0.88986 0.93318 1.21690 0.97971 0.95508 1.03424 1.21192 1.44633 0.90116 0.97456 0.90738 1.24948 0.95396 0.98937 0.95057 1.69886 1.47607 1.35054 1.01224 0.86424 0.77482 0.85114 0.78385 1.19574 1.21149 1.21116 1.22681 0.94049 0.99257 1.03387 1.22945 1.00478 1.04312 0.93430 1.23381 1.02747 0.95296 1.00271 0.88401 0.91751 0.92020 0.87239 0.86737 0.77426 0.97288 0.89099 0.94960 0.93141 0.87764 0.88175 0.89645 0.89809 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.29 10.56 -39.26 -0.41 -4.71 16 3 C 0.45 6.05 7.82 36.01 0.28 6.33 16 4 O -0.48 -8.56 15.10 -18.75 -0.28 -8.84 16 5 C -0.12 -1.23 5.34 -27.88 -0.15 -1.38 16 6 C 0.19 2.72 2.00 -67.93 -0.14 2.58 16 7 H 0.10 1.69 7.39 -51.93 -0.38 1.30 16 8 N -0.73 -12.81 2.65 -53.81 -0.14 -12.95 16 9 C 0.53 12.07 5.98 -10.99 -0.07 12.01 16 10 O -0.54 -13.92 12.49 5.56 0.07 -13.85 16 11 C 0.03 0.75 2.64 -92.92 -0.25 0.51 16 12 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.13 -3.10 8.86 37.16 0.33 -2.77 16 14 C -0.50 -14.32 8.37 -34.44 -0.29 -14.61 16 15 H 0.07 2.28 6.75 -52.49 -0.35 1.92 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -25.71 11.32 55.43 0.63 -25.09 16 18 Si 0.90 22.28 29.54 -169.99 -5.02 17.25 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.17 -2.29 5.70 -90.62 -0.52 -2.81 16 23 C -0.17 -2.46 9.74 -26.69 -0.26 -2.72 16 24 C -0.18 -2.86 9.82 -26.69 -0.26 -3.12 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 28 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.39 6.14 8.02 -40.82 -0.33 5.82 16 31 H 0.01 0.17 7.56 -51.93 -0.39 -0.22 16 32 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 35 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 36 H 0.10 1.60 6.67 -51.93 -0.35 1.25 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.13 2.54 5.02 -51.93 -0.26 2.28 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -33.52 322.29 -6.39 -39.91 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.74 Total: 6.46 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -0.34 Total: -3.05 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.48 Total: -38.04 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.63 Total: -27.39 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.52 -6.39 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829869543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.720 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds