Wall clock time and date at job start Mon Mar 30 2020 04:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 H 1.09004 * 109.47346 * 305.00026 * 6 5 3 8 8 N 1.46497 * 109.47195 * 64.99546 * 6 5 3 9 9 C 1.34774 * 120.00444 * 204.99889 * 8 6 5 10 10 O 1.21282 * 119.99907 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00466 * 180.02562 * 9 8 6 12 12 H 1.09002 * 109.47090 * 59.99722 * 11 9 8 13 13 C 1.53008 * 109.46937 * 300.00349 * 11 9 8 14 14 C 1.50698 * 109.47584 * 180.02562 * 11 9 8 15 15 H 1.08002 * 119.99913 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99964 * 179.97438 * 14 11 9 17 17 N 1.31507 * 120.00182 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47350 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47326 * 119.99790 * 18 16 14 21 21 H 1.48500 * 109.47216 * 240.00071 * 18 16 14 22 22 C 1.52997 * 109.47504 * 184.99949 * 6 5 3 23 23 C 1.53002 * 117.50022 * 248.74910 * 22 6 5 24 24 C 1.52997 * 117.50076 * 180.08715 * 22 6 5 25 25 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 27 27 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 29 29 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 30 30 H 0.97001 * 119.99762 * 25.00311 * 8 6 5 31 31 H 1.09001 * 109.47165 * 59.99977 * 13 11 9 32 32 H 1.09002 * 109.47034 * 179.97438 * 13 11 9 33 33 H 1.08993 * 109.46940 * 299.99660 * 13 11 9 34 34 H 0.97004 * 120.00173 * 179.97438 * 17 16 14 35 35 H 1.09003 * 115.54905 * 34.41348 * 22 6 5 36 36 H 1.09000 * 117.49650 * 359.97438 * 23 22 6 37 37 H 1.09001 * 117.49817 * 145.01411 * 23 22 6 38 38 H 1.08996 * 117.49862 * 214.97497 * 24 22 6 39 39 H 1.08996 * 117.50355 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5375 3.2575 -0.8429 8 7 3.5792 3.3762 1.2506 9 6 3.3824 4.7086 1.2982 10 8 3.5533 5.3827 0.3046 11 6 2.9499 5.3610 2.5860 12 1 3.6997 5.1780 3.3557 13 6 1.6090 4.7732 3.0303 14 6 2.8010 6.8453 2.3720 15 1 3.0000 7.2735 1.4006 16 6 2.4107 7.6567 3.4162 17 7 2.1678 7.1352 4.5988 18 14 2.2268 9.4966 3.1511 19 1 2.5556 9.8290 1.7415 20 1 0.8277 9.9011 3.4410 21 1 3.1503 10.2224 4.0597 22 6 5.5226 2.8237 -0.1274 23 6 6.3067 3.3216 1.0885 24 6 6.1564 4.2161 -0.1445 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 3.9563 0.7806 0.8892 29 1 3.9557 0.7809 -0.8908 30 1 3.4421 2.8370 2.0453 31 1 1.7163 3.6996 3.1850 32 1 1.2964 5.2448 3.9620 33 1 0.8592 4.9563 2.2606 34 1 1.8936 7.7061 5.3336 35 1 5.9853 2.0525 -0.7433 36 1 5.7377 3.5913 1.9782 37 1 7.2853 2.8781 1.2723 38 1 7.0363 4.3609 -0.7713 39 1 5.4887 5.0741 -0.0663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829869543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:07 Heat of formation + Delta-G solvation = -122.425530 kcal Electronic energy + Delta-G solvation = -21591.627282 eV Core-core repulsion = 18306.470260 eV Total energy + Delta-G solvation = -3285.157022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70949 -40.75309 -38.28375 -37.42990 -35.73878 -34.99600 -32.93917 -31.62932 -28.72744 -27.22185 -25.99539 -24.39649 -23.20015 -21.95080 -21.29742 -20.79809 -18.56279 -18.37394 -17.85184 -17.62139 -17.31492 -16.95531 -16.79642 -16.16116 -15.49056 -14.83883 -14.81576 -14.40662 -14.34728 -14.01708 -13.54107 -13.42499 -13.01714 -12.94488 -12.79000 -12.76049 -12.69371 -12.52712 -12.32749 -12.08382 -12.01127 -11.76216 -11.53383 -11.17632 -11.04734 -10.84825 -10.59000 -10.21316 -9.79850 -8.15966 -6.25671 1.25718 1.37064 1.38577 1.52629 1.76743 2.03323 2.35750 2.53232 3.00340 3.13415 3.56910 3.74917 4.09583 4.17900 4.27344 4.31730 4.33651 4.36700 4.42977 4.52579 4.67740 4.70903 4.73904 4.90390 4.90686 4.96872 5.02044 5.10112 5.32912 5.44367 5.47615 5.50721 5.69366 5.78002 5.91477 6.20859 6.76116 6.80659 6.88928 7.40576 7.65439 8.90343 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.005977 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.183676 B = 4683.300633 C = 5710.651252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.450 3.550 4 O -0.534 6.534 5 C -0.104 4.104 6 C 0.180 3.820 7 H 0.060 0.940 8 N -0.715 5.715 9 C 0.531 3.469 10 O -0.578 6.578 11 C 0.025 3.975 12 H 0.039 0.961 13 C -0.111 4.111 14 C -0.524 4.524 15 H 0.046 0.954 16 C 0.018 3.982 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.281 1.281 20 H -0.275 1.275 21 H -0.271 1.271 22 C -0.148 4.148 23 C -0.167 4.167 24 C -0.213 4.213 25 H 0.135 0.865 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.144 0.856 29 H 0.159 0.841 30 H 0.403 0.597 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.012 0.988 34 H 0.264 0.736 35 H 0.152 0.848 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -19.170 -6.797 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.294 3.706 4 O -0.423 6.423 5 C -0.142 4.142 6 C 0.075 3.925 7 H 0.078 0.922 8 N -0.367 5.367 9 C 0.320 3.680 10 O -0.457 6.457 11 C 0.004 3.996 12 H 0.057 0.943 13 C -0.169 4.169 14 C -0.562 4.562 15 H 0.065 0.935 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.781 3.219 19 H -0.206 1.206 20 H -0.200 1.200 21 H -0.197 1.197 22 C -0.166 4.166 23 C -0.204 4.204 24 C -0.249 4.249 25 H 0.153 0.847 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.176 0.824 30 H 0.239 0.761 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.170 0.830 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.651 -18.355 -7.334 20.101 hybrid contribution -0.740 1.333 0.365 1.568 sum 2.911 -17.023 -6.969 18.623 Atomic orbital electron populations 1.23458 0.75484 1.05467 1.01949 1.86478 1.24361 1.32756 1.84043 1.24375 0.93334 0.81098 0.71790 1.90813 1.68120 1.37652 1.45708 1.21760 0.85814 0.96524 1.10055 1.20265 0.92903 0.91802 0.87557 0.92193 1.45920 1.70181 1.07281 1.13305 1.21221 0.73954 0.81955 0.90852 1.90445 1.52448 1.64441 1.38393 1.18773 0.95517 0.95020 0.90326 0.94318 1.21467 0.96658 0.97375 1.01419 1.21303 1.45890 0.92442 0.96603 0.93522 1.25608 0.94851 1.02820 0.94813 1.69955 1.47308 1.36387 1.01554 0.85550 0.78060 0.80469 0.77842 1.20573 1.20044 1.19663 1.22777 0.92604 0.98325 1.02943 1.22958 1.01850 1.03496 0.92120 1.23263 1.03429 0.95332 1.02921 0.84692 0.92898 0.92634 0.83815 0.82373 0.76146 0.93867 0.91120 0.96884 0.92647 0.82999 0.90621 0.86479 0.87864 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -7.42 10.56 -51.41 -0.54 -7.97 16 3 C 0.45 11.20 7.82 71.24 0.56 11.75 16 4 O -0.53 -19.10 15.10 21.97 0.33 -18.77 16 5 C -0.10 -1.79 5.34 29.85 0.16 -1.63 16 6 C 0.18 4.97 2.00 44.99 0.09 5.06 16 7 H 0.06 2.15 7.39 -2.39 -0.02 2.13 16 8 N -0.71 -24.82 2.65 -442.55 -1.17 -25.99 16 9 C 0.53 25.23 5.98 87.66 0.52 25.75 16 10 O -0.58 -31.59 12.49 -3.03 -0.04 -31.62 16 11 C 0.02 1.31 2.64 -12.29 -0.03 1.28 16 12 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 13 C -0.11 -5.51 8.86 71.98 0.64 -4.87 16 14 C -0.52 -31.66 8.37 25.60 0.21 -31.44 16 15 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 16 C 0.02 1.03 5.30 84.66 0.45 1.48 16 17 N -0.91 -52.92 11.32 21.45 0.24 -52.67 16 18 Si 0.96 46.60 29.54 68.60 2.03 48.63 16 19 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 C -0.15 -3.45 5.70 -10.80 -0.06 -3.51 16 23 C -0.17 -4.36 9.74 30.62 0.30 -4.06 16 24 C -0.21 -6.67 9.82 30.62 0.30 -6.37 16 25 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 27 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 28 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.40 12.14 8.02 -92.71 -0.74 11.39 16 31 H 0.04 1.78 7.56 -2.39 -0.02 1.76 16 32 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 33 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.15 2.21 8.11 -2.39 -0.02 2.19 16 36 H 0.08 2.36 6.67 -2.39 -0.02 2.34 16 37 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.07 3.22 5.02 -2.39 -0.01 3.21 16 Total: -1.00 -78.48 322.29 5.50 -72.98 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.31 Total: 20.26 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 4.33 Total: -4.85 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -0.93 Total: -78.66 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -0.25 Total: -58.36 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -78.48 5.50 -72.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829869543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.444 kcal (2) G-P(sol) polarization free energy of solvation -78.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds