Wall clock time and date at job start Mon Mar 30 2020 04:34:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34233 * 117.00027 * 2 1
4 4 O 1.20830 * 119.99854 * 359.97438 * 3 2 1
5 5 C 1.50706 * 119.99976 * 179.97438 * 3 2 1
6 6 C 1.52999 * 109.46603 * 179.97438 * 5 3 2
7 7 H 1.08999 * 109.47014 * 55.00679 * 6 5 3
8 8 N 1.46499 * 109.47493 * 295.00080 * 6 5 3
9 9 C 1.34777 * 119.99665 * 155.28120 * 8 6 5
10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 6
11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 6
12 12 H 1.08993 * 109.47916 * 59.99687 * 11 9 8
13 13 C 1.53001 * 109.47207 * 299.99218 * 11 9 8
14 14 C 1.50698 * 109.46944 * 179.97438 * 11 9 8
15 15 H 1.08001 * 120.00089 * 359.97438 * 14 11 9
16 16 C 1.37882 * 120.00151 * 179.97438 * 14 11 9
17 17 N 1.31511 * 119.99699 * 359.97438 * 16 14 11
18 18 Si 1.86799 * 119.99903 * 179.97438 * 16 14 11
19 19 H 1.48496 * 109.47325 * 60.00275 * 18 16 14
20 20 H 1.48505 * 109.47033 * 180.02562 * 18 16 14
21 21 H 1.48498 * 109.47222 * 299.99959 * 18 16 14
22 22 C 1.53008 * 109.46675 * 175.00260 * 6 5 3
23 23 C 1.53007 * 117.49696 * 248.75046 * 22 6 5
24 24 C 1.52998 * 117.50017 * 180.09308 * 22 6 5
25 25 H 1.08997 * 109.47135 * 300.00481 * 1 2 3
26 26 H 1.08999 * 109.47077 * 60.00259 * 1 2 3
27 27 H 1.08990 * 109.46897 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.46851 * 59.99957 * 5 3 2
29 29 H 1.08993 * 109.47183 * 299.99742 * 5 3 2
30 30 H 0.97001 * 119.99790 * 334.99833 * 8 6 5
31 31 H 1.09001 * 109.47038 * 60.00421 * 13 11 9
32 32 H 1.08995 * 109.47475 * 180.02562 * 13 11 9
33 33 H 1.09001 * 109.47406 * 300.00436 * 13 11 9
34 34 H 0.97004 * 119.99534 * 179.97438 * 17 16 14
35 35 H 1.08992 * 115.54981 * 34.41569 * 22 6 5
36 36 H 1.08999 * 117.49485 * 0.02562 * 23 22 6
37 37 H 1.09001 * 117.49917 * 145.01733 * 23 22 6
38 38 H 1.08993 * 117.49961 * 214.98139 * 24 22 6
39 39 H 1.09002 * 117.49657 * 359.97438 * 24 22 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2094 -0.0005
5 6 3.5664 1.2749 0.0006
6 6 4.0001 2.7421 -0.0002
7 1 3.5376 3.2581 0.8412
8 7 3.5793 3.3752 -1.2525
9 6 3.3879 4.7083 -1.3026
10 8 3.5592 5.3832 -0.3095
11 6 2.9610 5.3603 -2.5924
12 1 2.0049 4.9449 -2.9105
13 6 4.0150 5.0976 -3.6699
14 6 2.8175 6.8455 -2.3811
15 1 3.0152 7.2743 -1.4098
16 6 2.4338 7.6569 -3.4277
17 7 2.1935 7.1347 -4.6106
18 14 2.2552 9.4977 -3.1655
19 1 3.5572 10.0645 -2.7310
20 1 1.8347 10.1403 -4.4366
21 1 1.2312 9.7519 -2.1205
22 6 5.5228 2.8238 0.1261
23 6 6.0944 3.3847 1.4298
24 6 6.1563 4.2164 0.1463
25 1 -0.3633 0.5139 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0276 -0.0005
28 1 3.9564 0.7806 -0.8891
29 1 3.9558 0.7810 0.8908
30 1 3.4424 2.8353 -2.0467
31 1 4.1184 4.0233 -3.8227
32 1 3.7065 5.5695 -4.6027
33 1 4.9712 5.5130 -3.3519
34 1 1.9232 7.7056 -5.3468
35 1 6.0787 2.0251 -0.3647
36 1 5.3858 3.6950 2.1977
37 1 7.0267 2.9551 1.7965
38 1 7.1291 4.3337 -0.3310
39 1 5.4883 5.0743 0.0692
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000829869544.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:34:10
Heat of formation + Delta-G solvation = -104.731126 kcal
Electronic energy + Delta-G solvation = -21403.150240 eV
Core-core repulsion = 18118.760505 eV
Total energy + Delta-G solvation = -3284.389735 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.56205 -39.13362 -36.95485 -36.38347 -33.86997 -33.62437 -31.23014 -29.93579
-27.77128 -25.06951 -24.77616 -22.53508 -21.97639 -20.93135 -20.09502 -19.36814
-17.51842 -16.65535 -16.61659 -16.19916 -15.70292 -15.63289 -14.93098 -14.44761
-14.30298 -13.66040 -13.45707 -13.08684 -12.81050 -12.42026 -12.31919 -12.08366
-11.79217 -11.50674 -11.28683 -11.09961 -10.91577 -10.82683 -10.66776 -10.61280
-10.45898 -10.15887 -10.07939 -9.95737 -9.85910 -8.90051 -8.48335 -8.28775
-8.20132 -5.95666 -3.97992 2.25570 2.64885 3.41077 3.42912 3.48623
3.72773 3.86493 4.28001 4.53658 4.61510 4.70141 5.03015 5.05220
5.13343 5.16569 5.27163 5.35805 5.37762 5.39404 5.48514 5.56154
5.86004 6.00106 6.20880 6.30479 6.35351 6.45359 6.69599 6.78491
6.92361 7.01720 7.20754 7.57427 7.78521 7.83965 8.07403 8.24540
8.56128 9.10532 9.39366 9.67093 11.12082
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.017719 B = 0.005747 C = 0.004796
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1579.832616 B = 4870.770021 C = 5837.282706
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.367 6.367
3 C 0.450 3.550
4 O -0.481 6.481
5 C -0.116 4.116
6 C 0.186 3.814
7 H 0.093 0.907
8 N -0.733 5.733
9 C 0.531 3.469
10 O -0.545 6.545
11 C 0.029 3.971
12 H 0.050 0.950
13 C -0.130 4.130
14 C -0.496 4.496
15 H 0.073 0.927
16 C 0.057 3.943
17 N -0.898 5.898
18 Si 0.900 3.100
19 H -0.277 1.277
20 H -0.289 1.289
21 H -0.277 1.277
22 C -0.171 4.171
23 C -0.177 4.177
24 C -0.174 4.174
25 H 0.061 0.939
26 H 0.064 0.936
27 H 0.098 0.902
28 H 0.109 0.891
29 H 0.116 0.884
30 H 0.391 0.609
31 H 0.010 0.990
32 H 0.091 0.909
33 H 0.031 0.969
34 H 0.260 0.740
35 H 0.101 0.899
36 H 0.093 0.907
37 H 0.088 0.912
38 H 0.085 0.915
39 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.259 -16.399 7.258 18.227
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.284 6.284
3 C 0.291 3.709
4 O -0.365 6.365
5 C -0.155 4.155
6 C 0.080 3.920
7 H 0.111 0.889
8 N -0.385 5.385
9 C 0.322 3.678
10 O -0.421 6.421
11 C 0.008 3.992
12 H 0.067 0.933
13 C -0.188 4.188
14 C -0.535 4.535
15 H 0.091 0.909
16 C -0.143 4.143
17 N -0.538 5.538
18 Si 0.728 3.272
19 H -0.202 1.202
20 H -0.215 1.215
21 H -0.203 1.203
22 C -0.191 4.191
23 C -0.214 4.214
24 C -0.211 4.211
25 H 0.080 0.920
26 H 0.083 0.917
27 H 0.116 0.884
28 H 0.127 0.873
29 H 0.134 0.866
30 H 0.225 0.775
31 H 0.029 0.971
32 H 0.110 0.890
33 H 0.050 0.950
34 H 0.070 0.930
35 H 0.119 0.881
36 H 0.111 0.889
37 H 0.107 0.893
38 H 0.103 0.897
39 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 3.062 -15.515 7.797 17.632
hybrid contribution -0.358 0.559 -0.376 0.763
sum 2.704 -14.956 7.421 16.913
Atomic orbital electron populations
1.23229 0.76466 1.03328 1.02783 1.86481 1.23384 1.33858 1.84678
1.23772 0.92203 0.81467 0.73410 1.90806 1.66790 1.35898 1.43042
1.21710 0.87832 0.99510 1.06407 1.20140 0.91443 0.89728 0.90661
0.88900 1.46201 1.71926 1.08990 1.11429 1.21760 0.73732 0.80140
0.92182 1.90435 1.50903 1.63041 1.37741 1.18841 0.96149 0.96627
0.87560 0.93264 1.21721 0.97914 0.96376 1.02800 1.21110 1.44867
0.90299 0.97217 0.90859 1.24947 0.95359 0.98922 0.95094 1.69869
1.47494 1.35303 1.01147 0.86525 0.78635 0.84979 0.77083 1.20234
1.21464 1.20274 1.22607 0.95041 0.98961 1.02441 1.22927 1.02211
1.04892 0.91401 1.23346 1.02387 0.95838 0.99519 0.91998 0.91734
0.88362 0.87290 0.86562 0.77540 0.97089 0.89015 0.95019 0.93039
0.88056 0.88901 0.89336 0.89654 0.85497
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.34 10.56 101.05 1.07 1.41 16
2 O -0.37 -4.28 10.57 -39.27 -0.41 -4.69 16
3 C 0.45 6.09 7.82 36.01 0.28 6.37 16
4 O -0.48 -8.63 15.10 -18.75 -0.28 -8.92 16
5 C -0.12 -1.24 5.34 -27.88 -0.15 -1.39 16
6 C 0.19 2.75 1.83 -67.93 -0.12 2.62 16
7 H 0.09 1.65 7.15 -51.93 -0.37 1.28 16
8 N -0.73 -13.04 4.10 -53.80 -0.22 -13.26 16
9 C 0.53 12.29 6.48 -10.99 -0.07 12.22 16
10 O -0.54 -14.05 12.47 5.55 0.07 -13.98 16
11 C 0.03 0.75 2.64 -92.92 -0.25 0.51 16
12 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16
13 C -0.13 -3.04 8.87 37.16 0.33 -2.71 16
14 C -0.50 -14.41 8.38 -34.44 -0.29 -14.70 16
15 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16
16 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16
17 N -0.90 -25.82 11.32 55.43 0.63 -25.19 16
18 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16
19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
21 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16
22 C -0.17 -2.27 5.36 -90.61 -0.49 -2.76 16
23 C -0.18 -2.28 10.18 -26.69 -0.27 -2.55 16
24 C -0.17 -2.77 9.73 -26.69 -0.26 -3.03 16
25 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16
26 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16
27 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16
28 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16
29 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16
30 H 0.39 6.22 8.02 -40.82 -0.33 5.89 16
31 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16
32 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16
33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
35 H 0.10 1.12 8.11 -51.93 -0.42 0.69 16
36 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16
37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16
39 H 0.13 2.58 5.00 -51.93 -0.26 2.32 16
LS Contribution 325.18 15.07 4.90 4.90
Total: -1.00 -33.62 325.18 -6.45 -40.07
By element:
Atomic # 1 Polarization: 12.03 SS G_CDS: -5.80 Total: 6.23 kcal
Atomic # 6 Polarization: -2.18 SS G_CDS: -0.31 Total: -2.49 kcal
Atomic # 7 Polarization: -38.86 SS G_CDS: 0.41 Total: -38.45 kcal
Atomic # 8 Polarization: -26.97 SS G_CDS: -0.63 Total: -27.59 kcal
Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -33.62 -6.45 -40.07 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829869544.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.657 kcal
(2) G-P(sol) polarization free energy of solvation -33.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.731 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds