Wall clock time and date at job start Mon Mar 30 2020 04:34:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45201 * 1
3 3 C 1.34233 * 117.00027 * 2 1
4 4 O 1.20830 * 119.99854 * 359.97438 * 3 2 1
5 5 C 1.50706 * 119.99976 * 179.97438 * 3 2 1
6 6 C 1.52999 * 109.46603 * 179.97438 * 5 3 2
7 7 H 1.08999 * 109.47014 * 55.00679 * 6 5 3
8 8 N 1.46499 * 109.47493 * 295.00080 * 6 5 3
9 9 C 1.34777 * 119.99665 * 155.28120 * 8 6 5
10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 6
11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 6
12 12 H 1.08993 * 109.47916 * 59.99687 * 11 9 8
13 13 C 1.53001 * 109.47207 * 299.99218 * 11 9 8
14 14 C 1.50698 * 109.46944 * 179.97438 * 11 9 8
15 15 H 1.08001 * 120.00089 * 359.97438 * 14 11 9
16 16 C 1.37882 * 120.00151 * 179.97438 * 14 11 9
17 17 N 1.31511 * 119.99699 * 359.97438 * 16 14 11
18 18 Si 1.86799 * 119.99903 * 179.97438 * 16 14 11
19 19 H 1.48496 * 109.47325 * 60.00275 * 18 16 14
20 20 H 1.48505 * 109.47033 * 180.02562 * 18 16 14
21 21 H 1.48498 * 109.47222 * 299.99959 * 18 16 14
22 22 C 1.53008 * 109.46675 * 175.00260 * 6 5 3
23 23 C 1.53007 * 117.49696 * 248.75046 * 22 6 5
24 24 C 1.52998 * 117.50017 * 180.09308 * 22 6 5
25 25 H 1.08997 * 109.47135 * 300.00481 * 1 2 3
26 26 H 1.08999 * 109.47077 * 60.00259 * 1 2 3
27 27 H 1.08990 * 109.46897 * 179.97438 * 1 2 3
28 28 H 1.08998 * 109.46851 * 59.99957 * 5 3 2
29 29 H 1.08993 * 109.47183 * 299.99742 * 5 3 2
30 30 H 0.97001 * 119.99790 * 334.99833 * 8 6 5
31 31 H 1.09001 * 109.47038 * 60.00421 * 13 11 9
32 32 H 1.08995 * 109.47475 * 180.02562 * 13 11 9
33 33 H 1.09001 * 109.47406 * 300.00436 * 13 11 9
34 34 H 0.97004 * 119.99534 * 179.97438 * 17 16 14
35 35 H 1.08992 * 115.54981 * 34.41569 * 22 6 5
36 36 H 1.08999 * 117.49485 * 0.02562 * 23 22 6
37 37 H 1.09001 * 117.49917 * 145.01733 * 23 22 6
38 38 H 1.08993 * 117.49961 * 214.98139 * 24 22 6
39 39 H 1.09002 * 117.49657 * 359.97438 * 24 22 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4033 2.2094 -0.0005
5 6 3.5664 1.2749 0.0006
6 6 4.0001 2.7421 -0.0002
7 1 3.5376 3.2581 0.8412
8 7 3.5793 3.3752 -1.2525
9 6 3.3879 4.7083 -1.3026
10 8 3.5592 5.3832 -0.3095
11 6 2.9610 5.3603 -2.5924
12 1 2.0049 4.9449 -2.9105
13 6 4.0150 5.0976 -3.6699
14 6 2.8175 6.8455 -2.3811
15 1 3.0152 7.2743 -1.4098
16 6 2.4338 7.6569 -3.4277
17 7 2.1935 7.1347 -4.6106
18 14 2.2552 9.4977 -3.1655
19 1 3.5572 10.0645 -2.7310
20 1 1.8347 10.1403 -4.4366
21 1 1.2312 9.7519 -2.1205
22 6 5.5228 2.8238 0.1261
23 6 6.0944 3.3847 1.4298
24 6 6.1563 4.2164 0.1463
25 1 -0.3633 0.5139 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0276 -0.0005
28 1 3.9564 0.7806 -0.8891
29 1 3.9558 0.7810 0.8908
30 1 3.4424 2.8353 -2.0467
31 1 4.1184 4.0233 -3.8227
32 1 3.7065 5.5695 -4.6027
33 1 4.9712 5.5130 -3.3519
34 1 1.9232 7.7056 -5.3468
35 1 6.0787 2.0251 -0.3647
36 1 5.3858 3.6950 2.1977
37 1 7.0267 2.9551 1.7965
38 1 7.1291 4.3337 -0.3310
39 1 5.4883 5.0743 0.0692
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000829869544.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:34:09
Heat of formation + Delta-G solvation = -127.198250 kcal
Electronic energy + Delta-G solvation = -21404.124488 eV
Core-core repulsion = 18118.760505 eV
Total energy + Delta-G solvation = -3285.363983 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 269.146 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.67923 -40.63760 -38.32835 -37.45771 -35.71916 -35.24932 -32.88029 -31.58303
-28.69802 -27.19392 -25.94893 -24.31827 -23.12111 -21.96384 -21.30841 -21.10667
-18.55310 -18.35930 -17.87555 -17.65030 -17.25652 -17.05290 -16.42460 -16.13894
-15.66873 -14.98376 -14.83022 -14.44097 -14.28274 -14.11456 -13.47643 -13.39496
-12.99013 -12.94969 -12.81774 -12.68628 -12.63216 -12.44950 -12.34541 -12.06280
-11.96021 -11.78481 -11.56930 -11.21090 -11.07195 -11.02070 -10.56752 -10.18811
-9.78982 -8.14758 -6.24764 1.22730 1.38524 1.40832 1.49261 1.74767
2.05104 2.32557 2.49208 3.10043 3.14670 3.54878 3.71622 4.10451
4.14038 4.20807 4.31233 4.32392 4.36208 4.42366 4.53362 4.64950
4.72758 4.76236 4.86636 4.89803 4.96772 5.05129 5.11003 5.32612
5.41561 5.49388 5.51558 5.71386 5.78116 5.96099 6.23456 6.76585
6.78424 6.90710 7.41232 7.67065 8.91097
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.017719 B = 0.005747 C = 0.004796
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1579.832616 B = 4870.770021 C = 5837.282706
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.359 6.359
3 C 0.451 3.549
4 O -0.537 6.537
5 C -0.105 4.105
6 C 0.181 3.819
7 H 0.055 0.945
8 N -0.715 5.715
9 C 0.531 3.469
10 O -0.580 6.580
11 C 0.024 3.976
12 H 0.027 0.973
13 C -0.114 4.114
14 C -0.526 4.526
15 H 0.047 0.953
16 C 0.017 3.983
17 N -0.912 5.912
18 Si 0.955 3.045
19 H -0.274 1.274
20 H -0.273 1.273
21 H -0.280 1.280
22 C -0.154 4.154
23 C -0.155 4.155
24 C -0.210 4.210
25 H 0.055 0.945
26 H 0.052 0.948
27 H 0.136 0.864
28 H 0.147 0.853
29 H 0.157 0.843
30 H 0.403 0.597
31 H 0.050 0.950
32 H 0.067 0.933
33 H 0.024 0.976
34 H 0.264 0.736
35 H 0.142 0.858
36 H 0.079 0.921
37 H 0.123 0.877
38 H 0.096 0.904
39 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.576 -19.068 7.321 20.932
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.276 6.276
3 C 0.295 3.705
4 O -0.426 6.426
5 C -0.142 4.142
6 C 0.076 3.924
7 H 0.074 0.926
8 N -0.366 5.366
9 C 0.321 3.679
10 O -0.460 6.460
11 C 0.002 3.998
12 H 0.045 0.955
13 C -0.172 4.172
14 C -0.564 4.564
15 H 0.065 0.935
16 C -0.181 4.181
17 N -0.552 5.552
18 Si 0.781 3.219
19 H -0.199 1.199
20 H -0.198 1.198
21 H -0.205 1.205
22 C -0.172 4.172
23 C -0.193 4.193
24 C -0.247 4.247
25 H 0.074 0.926
26 H 0.071 0.929
27 H 0.154 0.846
28 H 0.165 0.835
29 H 0.175 0.825
30 H 0.238 0.762
31 H 0.069 0.931
32 H 0.086 0.914
33 H 0.043 0.957
34 H 0.073 0.927
35 H 0.160 0.840
36 H 0.098 0.902
37 H 0.141 0.859
38 H 0.115 0.885
39 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 4.387 -18.260 7.846 20.353
hybrid contribution -0.830 1.325 -0.362 1.605
sum 3.556 -16.935 7.484 18.854
Atomic orbital electron populations
1.23472 0.75429 1.05541 1.01966 1.86481 1.24413 1.32673 1.83994
1.24385 0.93339 0.81085 0.71678 1.90809 1.68177 1.37750 1.45887
1.21779 0.85791 0.96572 1.10084 1.20312 0.92638 0.91841 0.87570
0.92638 1.45911 1.70273 1.07193 1.13249 1.21217 0.74063 0.81943
0.90706 1.90429 1.52662 1.64421 1.38443 1.18768 0.95892 0.95261
0.89848 0.95539 1.21499 0.96483 0.98709 1.00522 1.21256 1.46138
0.92593 0.96429 0.93486 1.25615 0.94827 1.02845 0.94843 1.69954
1.47196 1.36593 1.01457 0.85657 0.78485 0.80306 0.77444 1.19935
1.19752 1.20535 1.22684 0.93704 0.98083 1.02775 1.22987 1.03181
1.02864 0.90227 1.23172 1.02388 0.95830 1.03282 0.92620 0.92883
0.84591 0.83522 0.82541 0.76173 0.93069 0.91382 0.95658 0.92661
0.83986 0.90193 0.85857 0.88538 0.90470
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.52 10.56 113.37 1.20 1.71 16
2 O -0.36 -7.49 10.57 -51.45 -0.54 -8.03 16
3 C 0.45 11.40 7.82 71.24 0.56 11.96 16
4 O -0.54 -19.55 15.10 21.95 0.33 -19.22 16
5 C -0.11 -1.84 5.34 29.85 0.16 -1.68 16
6 C 0.18 5.07 1.83 44.99 0.08 5.16 16
7 H 0.06 2.01 7.15 -2.39 -0.02 1.99 16
8 N -0.71 -25.14 4.10 -442.52 -1.81 -26.95 16
9 C 0.53 25.49 6.48 87.66 0.57 26.06 16
10 O -0.58 -31.74 12.47 -3.04 -0.04 -31.78 16
11 C 0.02 1.25 2.64 -12.29 -0.03 1.22 16
12 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16
13 C -0.11 -5.38 8.87 71.98 0.64 -4.74 16
14 C -0.53 -31.87 8.38 25.60 0.21 -31.66 16
15 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16
16 C 0.02 1.02 5.30 84.66 0.45 1.47 16
17 N -0.91 -53.18 11.32 21.45 0.24 -52.94 16
18 Si 0.96 46.70 29.54 68.60 2.03 48.72 16
19 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16
20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
21 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16
22 C -0.15 -3.62 5.36 -10.79 -0.06 -3.68 16
23 C -0.16 -3.64 10.18 30.62 0.31 -3.33 16
24 C -0.21 -6.58 9.73 30.62 0.30 -6.28 16
25 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16
26 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16
27 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16
28 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16
29 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16
30 H 0.40 12.15 8.02 -92.71 -0.74 11.41 16
31 H 0.05 1.93 7.56 -2.39 -0.02 1.92 16
32 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16
33 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16
34 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16
35 H 0.14 2.29 8.11 -2.39 -0.02 2.27 16
36 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16
37 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16
38 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16
39 H 0.08 3.30 5.00 -2.39 -0.01 3.29 16
Total: -1.00 -78.91 325.18 4.90 -74.01
By element:
Atomic # 1 Polarization: 19.68 SS G_CDS: 0.31 Total: 19.99 kcal
Atomic # 6 Polarization: -8.19 SS G_CDS: 4.38 Total: -3.80 kcal
Atomic # 7 Polarization: -78.32 SS G_CDS: -1.57 Total: -79.89 kcal
Atomic # 8 Polarization: -58.78 SS G_CDS: -0.25 Total: -59.03 kcal
Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal
Total: -78.91 4.90 -74.01 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829869544.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.190 kcal
(2) G-P(sol) polarization free energy of solvation -78.911 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.101 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.198 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds