Wall clock time and date at job start Mon Mar 30 2020 04:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00027 * 2 1 4 4 O 1.20830 * 119.99854 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99976 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.46603 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.47014 * 55.00679 * 6 5 3 8 8 N 1.46499 * 109.47493 * 295.00080 * 6 5 3 9 9 C 1.34777 * 119.99665 * 155.28120 * 8 6 5 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 6 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 6 12 12 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 13 13 C 1.53001 * 109.47207 * 299.99218 * 11 9 8 14 14 C 1.50698 * 109.46944 * 179.97438 * 11 9 8 15 15 H 1.08001 * 120.00089 * 359.97438 * 14 11 9 16 16 C 1.37882 * 120.00151 * 179.97438 * 14 11 9 17 17 N 1.31511 * 119.99699 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99903 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47325 * 60.00275 * 18 16 14 20 20 H 1.48505 * 109.47033 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47222 * 299.99959 * 18 16 14 22 22 C 1.53008 * 109.46675 * 175.00260 * 6 5 3 23 23 C 1.53007 * 117.49696 * 248.75046 * 22 6 5 24 24 C 1.52998 * 117.50017 * 180.09308 * 22 6 5 25 25 H 1.08997 * 109.47135 * 300.00481 * 1 2 3 26 26 H 1.08999 * 109.47077 * 60.00259 * 1 2 3 27 27 H 1.08990 * 109.46897 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46851 * 59.99957 * 5 3 2 29 29 H 1.08993 * 109.47183 * 299.99742 * 5 3 2 30 30 H 0.97001 * 119.99790 * 334.99833 * 8 6 5 31 31 H 1.09001 * 109.47038 * 60.00421 * 13 11 9 32 32 H 1.08995 * 109.47475 * 180.02562 * 13 11 9 33 33 H 1.09001 * 109.47406 * 300.00436 * 13 11 9 34 34 H 0.97004 * 119.99534 * 179.97438 * 17 16 14 35 35 H 1.08992 * 115.54981 * 34.41569 * 22 6 5 36 36 H 1.08999 * 117.49485 * 0.02562 * 23 22 6 37 37 H 1.09001 * 117.49917 * 145.01733 * 23 22 6 38 38 H 1.08993 * 117.49961 * 214.98139 * 24 22 6 39 39 H 1.09002 * 117.49657 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.5376 3.2581 0.8412 8 7 3.5793 3.3752 -1.2525 9 6 3.3879 4.7083 -1.3026 10 8 3.5592 5.3832 -0.3095 11 6 2.9610 5.3603 -2.5924 12 1 2.0049 4.9449 -2.9105 13 6 4.0150 5.0976 -3.6699 14 6 2.8175 6.8455 -2.3811 15 1 3.0152 7.2743 -1.4098 16 6 2.4338 7.6569 -3.4277 17 7 2.1935 7.1347 -4.6106 18 14 2.2552 9.4977 -3.1655 19 1 3.5572 10.0645 -2.7310 20 1 1.8347 10.1403 -4.4366 21 1 1.2312 9.7519 -2.1205 22 6 5.5228 2.8238 0.1261 23 6 6.0944 3.3847 1.4298 24 6 6.1563 4.2164 0.1463 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9564 0.7806 -0.8891 29 1 3.9558 0.7810 0.8908 30 1 3.4424 2.8353 -2.0467 31 1 4.1184 4.0233 -3.8227 32 1 3.7065 5.5695 -4.6027 33 1 4.9712 5.5130 -3.3519 34 1 1.9232 7.7056 -5.3468 35 1 6.0787 2.0251 -0.3647 36 1 5.3858 3.6950 2.1977 37 1 7.0267 2.9551 1.7965 38 1 7.1291 4.3337 -0.3310 39 1 5.4883 5.0743 0.0692 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829869544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:09 Heat of formation + Delta-G solvation = -127.198250 kcal Electronic energy + Delta-G solvation = -21404.124488 eV Core-core repulsion = 18118.760505 eV Total energy + Delta-G solvation = -3285.363983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67923 -40.63760 -38.32835 -37.45771 -35.71916 -35.24932 -32.88029 -31.58303 -28.69802 -27.19392 -25.94893 -24.31827 -23.12111 -21.96384 -21.30841 -21.10667 -18.55310 -18.35930 -17.87555 -17.65030 -17.25652 -17.05290 -16.42460 -16.13894 -15.66873 -14.98376 -14.83022 -14.44097 -14.28274 -14.11456 -13.47643 -13.39496 -12.99013 -12.94969 -12.81774 -12.68628 -12.63216 -12.44950 -12.34541 -12.06280 -11.96021 -11.78481 -11.56930 -11.21090 -11.07195 -11.02070 -10.56752 -10.18811 -9.78982 -8.14758 -6.24764 1.22730 1.38524 1.40832 1.49261 1.74767 2.05104 2.32557 2.49208 3.10043 3.14670 3.54878 3.71622 4.10451 4.14038 4.20807 4.31233 4.32392 4.36208 4.42366 4.53362 4.64950 4.72758 4.76236 4.86636 4.89803 4.96772 5.05129 5.11003 5.32612 5.41561 5.49388 5.51558 5.71386 5.78116 5.96099 6.23456 6.76585 6.78424 6.90710 7.41232 7.67065 8.91097 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.005747 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.832616 B = 4870.770021 C = 5837.282706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.451 3.549 4 O -0.537 6.537 5 C -0.105 4.105 6 C 0.181 3.819 7 H 0.055 0.945 8 N -0.715 5.715 9 C 0.531 3.469 10 O -0.580 6.580 11 C 0.024 3.976 12 H 0.027 0.973 13 C -0.114 4.114 14 C -0.526 4.526 15 H 0.047 0.953 16 C 0.017 3.983 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.274 1.274 20 H -0.273 1.273 21 H -0.280 1.280 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.210 4.210 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.403 0.597 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.142 0.858 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 -19.068 7.321 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.295 3.705 4 O -0.426 6.426 5 C -0.142 4.142 6 C 0.076 3.924 7 H 0.074 0.926 8 N -0.366 5.366 9 C 0.321 3.679 10 O -0.460 6.460 11 C 0.002 3.998 12 H 0.045 0.955 13 C -0.172 4.172 14 C -0.564 4.564 15 H 0.065 0.935 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.781 3.219 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.205 1.205 22 C -0.172 4.172 23 C -0.193 4.193 24 C -0.247 4.247 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.165 0.835 29 H 0.175 0.825 30 H 0.238 0.762 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.115 0.885 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.387 -18.260 7.846 20.353 hybrid contribution -0.830 1.325 -0.362 1.605 sum 3.556 -16.935 7.484 18.854 Atomic orbital electron populations 1.23472 0.75429 1.05541 1.01966 1.86481 1.24413 1.32673 1.83994 1.24385 0.93339 0.81085 0.71678 1.90809 1.68177 1.37750 1.45887 1.21779 0.85791 0.96572 1.10084 1.20312 0.92638 0.91841 0.87570 0.92638 1.45911 1.70273 1.07193 1.13249 1.21217 0.74063 0.81943 0.90706 1.90429 1.52662 1.64421 1.38443 1.18768 0.95892 0.95261 0.89848 0.95539 1.21499 0.96483 0.98709 1.00522 1.21256 1.46138 0.92593 0.96429 0.93486 1.25615 0.94827 1.02845 0.94843 1.69954 1.47196 1.36593 1.01457 0.85657 0.78485 0.80306 0.77444 1.19935 1.19752 1.20535 1.22684 0.93704 0.98083 1.02775 1.22987 1.03181 1.02864 0.90227 1.23172 1.02388 0.95830 1.03282 0.92620 0.92883 0.84591 0.83522 0.82541 0.76173 0.93069 0.91382 0.95658 0.92661 0.83986 0.90193 0.85857 0.88538 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.36 -7.49 10.57 -51.45 -0.54 -8.03 16 3 C 0.45 11.40 7.82 71.24 0.56 11.96 16 4 O -0.54 -19.55 15.10 21.95 0.33 -19.22 16 5 C -0.11 -1.84 5.34 29.85 0.16 -1.68 16 6 C 0.18 5.07 1.83 44.99 0.08 5.16 16 7 H 0.06 2.01 7.15 -2.39 -0.02 1.99 16 8 N -0.71 -25.14 4.10 -442.52 -1.81 -26.95 16 9 C 0.53 25.49 6.48 87.66 0.57 26.06 16 10 O -0.58 -31.74 12.47 -3.04 -0.04 -31.78 16 11 C 0.02 1.25 2.64 -12.29 -0.03 1.22 16 12 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 13 C -0.11 -5.38 8.87 71.98 0.64 -4.74 16 14 C -0.53 -31.87 8.38 25.60 0.21 -31.66 16 15 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 16 C 0.02 1.02 5.30 84.66 0.45 1.47 16 17 N -0.91 -53.18 11.32 21.45 0.24 -52.94 16 18 Si 0.96 46.70 29.54 68.60 2.03 48.72 16 19 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 22 C -0.15 -3.62 5.36 -10.79 -0.06 -3.68 16 23 C -0.16 -3.64 10.18 30.62 0.31 -3.33 16 24 C -0.21 -6.58 9.73 30.62 0.30 -6.28 16 25 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 26 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 27 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.40 12.15 8.02 -92.71 -0.74 11.41 16 31 H 0.05 1.93 7.56 -2.39 -0.02 1.92 16 32 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 33 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.14 2.29 8.11 -2.39 -0.02 2.27 16 36 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 37 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.08 3.30 5.00 -2.39 -0.01 3.29 16 Total: -1.00 -78.91 325.18 4.90 -74.01 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.31 Total: 19.99 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.38 Total: -3.80 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -1.57 Total: -79.89 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -0.25 Total: -59.03 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -78.91 4.90 -74.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829869544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.190 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds