Wall clock time and date at job start Mon Mar 30 2020 04:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99867 * 2 1 4 4 O 1.20830 * 120.00323 * 359.72425 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47348 * 179.72254 * 5 3 2 7 7 H 1.08995 * 109.47026 * 305.00506 * 6 5 3 8 8 N 1.46504 * 109.47049 * 65.00134 * 6 5 3 9 9 C 1.34778 * 120.00119 * 204.99869 * 8 6 5 10 10 O 1.21277 * 119.99636 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00012 * 179.97438 * 9 8 6 12 12 H 1.09006 * 109.47266 * 299.99911 * 11 9 8 13 13 C 1.52995 * 109.47050 * 60.00374 * 11 9 8 14 14 C 1.50706 * 109.46915 * 180.02562 * 11 9 8 15 15 H 1.07998 * 119.99613 * 0.02562 * 14 11 9 16 16 C 1.37878 * 119.99879 * 179.97438 * 14 11 9 17 17 N 1.31513 * 119.99967 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99928 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46969 * 120.00175 * 18 16 14 21 21 H 1.48490 * 109.47244 * 240.00097 * 18 16 14 22 22 C 1.52994 * 109.47095 * 184.99906 * 6 5 3 23 23 C 1.53011 * 117.50014 * 248.74736 * 22 6 5 24 24 C 1.53002 * 117.49791 * 180.08845 * 22 6 5 25 25 H 1.09009 * 109.46864 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47271 * 60.00074 * 1 2 3 27 27 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46564 * 299.72723 * 5 3 2 29 29 H 1.08998 * 109.47012 * 59.71777 * 5 3 2 30 30 H 0.97005 * 120.00236 * 24.99365 * 8 6 5 31 31 H 1.09000 * 109.46975 * 180.02562 * 13 11 9 32 32 H 1.09001 * 109.47015 * 299.99590 * 13 11 9 33 33 H 1.08997 * 109.47248 * 59.99770 * 13 11 9 34 34 H 0.97000 * 120.00387 * 180.02562 * 17 16 14 35 35 H 1.09001 * 115.55265 * 34.41319 * 22 6 5 36 36 H 1.09000 * 117.49671 * 0.02562 * 23 22 6 37 37 H 1.08997 * 117.49621 * 145.02119 * 23 22 6 38 38 H 1.09003 * 117.49834 * 214.97943 * 24 22 6 39 39 H 1.09000 * 117.50079 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7420 -0.0074 7 1 3.5377 3.2537 -0.8515 8 7 3.5790 3.3816 1.2415 9 6 3.3822 4.7143 1.2832 10 8 3.5533 5.3839 0.2866 11 6 2.9485 5.3721 2.5678 12 1 1.9928 4.9547 2.8851 13 6 3.9999 5.1197 3.6502 14 6 2.7999 6.8555 2.3472 15 1 2.9991 7.2793 1.3741 16 6 2.4085 7.6713 3.3876 17 7 2.1654 7.1550 4.5725 18 14 2.2249 9.5100 3.1145 19 1 2.5552 9.8363 1.7039 20 1 0.8255 9.9158 3.4013 21 1 3.1475 10.2396 4.0208 22 6 5.5227 2.8230 -0.1337 23 6 6.3066 3.3262 1.0802 24 6 6.1566 4.2154 -0.1568 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.9561 0.7848 0.8916 29 1 3.9559 0.7766 -0.8883 30 1 3.4418 2.8459 2.0385 31 1 3.6859 5.5952 4.5795 32 1 4.1070 4.0468 3.8096 33 1 4.9555 5.5371 3.3329 34 1 1.8897 7.7288 5.3043 35 1 5.9855 2.0491 -0.7461 36 1 5.7375 3.5991 1.9689 37 1 7.2851 2.8836 1.2661 38 1 7.0366 4.3574 -0.7841 39 1 5.4888 5.0737 -0.0824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829869545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:12 Heat of formation + Delta-G solvation = -101.066181 kcal Electronic energy + Delta-G solvation = -21568.319195 eV Core-core repulsion = 18284.088384 eV Total energy + Delta-G solvation = -3284.230811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58644 -39.31649 -36.84692 -36.34705 -33.65554 -33.63783 -31.33408 -29.94891 -27.80664 -25.11310 -24.81645 -22.63312 -21.98581 -20.92146 -19.82057 -19.29098 -17.53501 -16.66887 -16.61899 -16.15901 -15.77936 -15.69769 -15.26364 -14.37389 -14.01921 -13.59591 -13.45263 -13.02994 -12.76179 -12.52457 -12.26963 -12.07822 -11.80948 -11.59858 -11.39291 -11.10074 -10.94268 -10.82423 -10.61466 -10.60749 -10.44879 -10.16738 -10.02269 -9.89384 -9.70488 -8.89681 -8.50803 -8.32387 -8.20799 -5.97217 -3.99437 2.26061 2.65313 3.36251 3.43495 3.52148 3.81708 3.86692 4.18711 4.52861 4.61016 4.74752 5.03234 5.07015 5.14519 5.21933 5.29407 5.34411 5.36559 5.41944 5.52459 5.65062 6.00000 6.03258 6.18959 6.34563 6.40293 6.50885 6.66124 6.79788 6.89198 6.98931 7.19092 7.55119 7.78990 7.82073 8.05978 8.22207 8.53484 9.10049 9.36784 9.65937 11.10635 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.005837 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.284153 B = 4795.529149 C = 5683.652730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.450 3.550 4 O -0.481 6.481 5 C -0.116 4.116 6 C 0.186 3.814 7 H 0.095 0.905 8 N -0.734 5.734 9 C 0.529 3.471 10 O -0.541 6.541 11 C 0.028 3.972 12 H 0.050 0.950 13 C -0.131 4.131 14 C -0.495 4.495 15 H 0.075 0.925 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.175 4.175 23 C -0.176 4.176 24 C -0.180 4.180 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.392 0.608 31 H 0.092 0.908 32 H 0.010 0.990 33 H 0.032 0.968 34 H 0.259 0.741 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 -16.435 -6.435 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.291 3.709 4 O -0.365 6.365 5 C -0.154 4.154 6 C 0.080 3.920 7 H 0.113 0.887 8 N -0.388 5.388 9 C 0.320 3.680 10 O -0.417 6.417 11 C 0.007 3.993 12 H 0.068 0.932 13 C -0.189 4.189 14 C -0.534 4.534 15 H 0.093 0.907 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.194 4.194 23 C -0.213 4.213 24 C -0.217 4.217 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.226 0.774 31 H 0.110 0.890 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.121 -15.549 -6.999 17.335 hybrid contribution -0.379 0.558 0.337 0.754 sum 2.743 -14.991 -6.662 16.632 Atomic orbital electron populations 1.23230 0.76479 1.03317 1.02775 1.86478 1.23374 1.33882 1.84677 1.23783 0.92226 0.81457 0.73404 1.90806 1.66799 1.35892 1.43051 1.21705 0.87767 0.99554 1.06402 1.20080 0.91781 0.89532 0.90614 0.88667 1.46232 1.71922 1.09089 1.11514 1.21786 0.73858 0.80156 0.92225 1.90450 1.50626 1.63315 1.37323 1.18860 0.96136 0.96674 0.87590 0.93225 1.21748 0.97961 0.96386 1.02840 1.21191 1.44469 0.90330 0.97371 0.90734 1.24948 0.95362 0.98962 0.95083 1.69883 1.47483 1.35128 1.01303 0.86420 0.77478 0.85090 0.78398 1.19576 1.21150 1.21120 1.22675 0.94028 0.99199 1.03502 1.22998 1.00491 1.04252 0.93572 1.23376 1.02721 0.95327 1.00255 0.91747 0.91996 0.88376 0.87216 0.86703 0.77429 0.88954 0.97084 0.94920 0.93138 0.87796 0.87863 0.89729 0.89854 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.37 -4.27 10.57 -39.24 -0.41 -4.68 16 3 C 0.45 6.05 7.82 36.01 0.28 6.33 16 4 O -0.48 -8.60 15.10 -18.75 -0.28 -8.88 16 5 C -0.12 -1.23 5.34 -27.88 -0.15 -1.38 16 6 C 0.19 2.72 2.00 -67.93 -0.14 2.59 16 7 H 0.10 1.69 7.39 -51.93 -0.38 1.30 16 8 N -0.73 -12.83 2.65 -53.81 -0.14 -12.98 16 9 C 0.53 12.09 5.98 -10.99 -0.07 12.03 16 10 O -0.54 -13.93 12.49 5.56 0.07 -13.86 16 11 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 12 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 13 C -0.13 -3.02 8.67 37.16 0.32 -2.70 16 14 C -0.50 -14.30 8.37 -34.44 -0.29 -14.59 16 15 H 0.07 2.28 6.75 -52.49 -0.35 1.92 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 17 N -0.90 -25.71 11.32 55.43 0.63 -25.08 16 18 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.17 -2.31 5.71 -90.62 -0.52 -2.83 16 23 C -0.18 -2.51 9.74 -26.68 -0.26 -2.77 16 24 C -0.18 -2.88 9.82 -26.69 -0.26 -3.14 16 25 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.39 6.15 8.02 -40.82 -0.33 5.82 16 31 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 32 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.10 1.08 8.11 -51.93 -0.42 0.66 16 36 H 0.10 1.67 6.48 -51.93 -0.34 1.33 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.13 2.55 5.02 -51.93 -0.26 2.29 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -33.49 321.91 -6.39 -39.88 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.73 Total: 6.56 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.35 Total: -3.08 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.48 Total: -38.06 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.63 Total: -27.42 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.49 -6.39 -39.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829869545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.185 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds