Wall clock time and date at job start Mon Mar 30 2020 04:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99867 * 2 1 4 4 O 1.20830 * 120.00323 * 359.72425 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47348 * 179.72254 * 5 3 2 7 7 H 1.08995 * 109.47026 * 305.00506 * 6 5 3 8 8 N 1.46504 * 109.47049 * 65.00134 * 6 5 3 9 9 C 1.34778 * 120.00119 * 204.99869 * 8 6 5 10 10 O 1.21277 * 119.99636 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00012 * 179.97438 * 9 8 6 12 12 H 1.09006 * 109.47266 * 299.99911 * 11 9 8 13 13 C 1.52995 * 109.47050 * 60.00374 * 11 9 8 14 14 C 1.50706 * 109.46915 * 180.02562 * 11 9 8 15 15 H 1.07998 * 119.99613 * 0.02562 * 14 11 9 16 16 C 1.37878 * 119.99879 * 179.97438 * 14 11 9 17 17 N 1.31513 * 119.99967 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 119.99928 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46969 * 120.00175 * 18 16 14 21 21 H 1.48490 * 109.47244 * 240.00097 * 18 16 14 22 22 C 1.52994 * 109.47095 * 184.99906 * 6 5 3 23 23 C 1.53011 * 117.50014 * 248.74736 * 22 6 5 24 24 C 1.53002 * 117.49791 * 180.08845 * 22 6 5 25 25 H 1.09009 * 109.46864 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47271 * 60.00074 * 1 2 3 27 27 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46564 * 299.72723 * 5 3 2 29 29 H 1.08998 * 109.47012 * 59.71777 * 5 3 2 30 30 H 0.97005 * 120.00236 * 24.99365 * 8 6 5 31 31 H 1.09000 * 109.46975 * 180.02562 * 13 11 9 32 32 H 1.09001 * 109.47015 * 299.99590 * 13 11 9 33 33 H 1.08997 * 109.47248 * 59.99770 * 13 11 9 34 34 H 0.97000 * 120.00387 * 180.02562 * 17 16 14 35 35 H 1.09001 * 115.55265 * 34.41319 * 22 6 5 36 36 H 1.09000 * 117.49671 * 0.02562 * 23 22 6 37 37 H 1.08997 * 117.49621 * 145.02119 * 23 22 6 38 38 H 1.09003 * 117.49834 * 214.97943 * 24 22 6 39 39 H 1.09000 * 117.50079 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7420 -0.0074 7 1 3.5377 3.2537 -0.8515 8 7 3.5790 3.3816 1.2415 9 6 3.3822 4.7143 1.2832 10 8 3.5533 5.3839 0.2866 11 6 2.9485 5.3721 2.5678 12 1 1.9928 4.9547 2.8851 13 6 3.9999 5.1197 3.6502 14 6 2.7999 6.8555 2.3472 15 1 2.9991 7.2793 1.3741 16 6 2.4085 7.6713 3.3876 17 7 2.1654 7.1550 4.5725 18 14 2.2249 9.5100 3.1145 19 1 2.5552 9.8363 1.7039 20 1 0.8255 9.9158 3.4013 21 1 3.1475 10.2396 4.0208 22 6 5.5227 2.8230 -0.1337 23 6 6.3066 3.3262 1.0802 24 6 6.1566 4.2154 -0.1568 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.9561 0.7848 0.8916 29 1 3.9559 0.7766 -0.8883 30 1 3.4418 2.8459 2.0385 31 1 3.6859 5.5952 4.5795 32 1 4.1070 4.0468 3.8096 33 1 4.9555 5.5371 3.3329 34 1 1.8897 7.7288 5.3043 35 1 5.9855 2.0491 -0.7461 36 1 5.7375 3.5991 1.9689 37 1 7.2851 2.8836 1.2661 38 1 7.0366 4.3574 -0.7841 39 1 5.4888 5.0737 -0.0824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829869545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:11 Heat of formation + Delta-G solvation = -122.961531 kcal Electronic energy + Delta-G solvation = -21569.268649 eV Core-core repulsion = 18284.088384 eV Total energy + Delta-G solvation = -3285.180265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72321 -40.77058 -38.25948 -37.44129 -35.74015 -34.98816 -32.96696 -31.61530 -28.73003 -27.21344 -25.96490 -24.44190 -23.17142 -21.95470 -21.26065 -20.81469 -18.58231 -18.32429 -17.92204 -17.64026 -17.25121 -16.99674 -16.80019 -16.22618 -15.32951 -14.94062 -14.83041 -14.41036 -14.31707 -14.00228 -13.53730 -13.43210 -13.01422 -12.95733 -12.80213 -12.74099 -12.68576 -12.54961 -12.19771 -12.12765 -11.99564 -11.77851 -11.55368 -11.16544 -11.03544 -10.84122 -10.57664 -10.20835 -9.80015 -8.15850 -6.25725 1.23884 1.36887 1.38235 1.52415 1.75646 2.04037 2.35359 2.53294 3.01497 3.13425 3.56815 3.74761 4.10472 4.18863 4.27878 4.31263 4.32876 4.36135 4.43669 4.53452 4.68331 4.72890 4.74951 4.89177 4.93378 4.96881 5.06591 5.10928 5.34865 5.42704 5.49653 5.51539 5.70949 5.78785 5.95542 6.22421 6.76032 6.79082 6.89077 7.40617 7.65563 8.90374 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.005837 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.284153 B = 4795.529149 C = 5683.652730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.451 3.549 4 O -0.538 6.538 5 C -0.104 4.104 6 C 0.180 3.820 7 H 0.059 0.941 8 N -0.715 5.715 9 C 0.531 3.469 10 O -0.578 6.578 11 C 0.023 3.977 12 H 0.027 0.973 13 C -0.114 4.114 14 C -0.524 4.524 15 H 0.046 0.954 16 C 0.017 3.983 17 N -0.913 5.913 18 Si 0.955 3.045 19 H -0.281 1.281 20 H -0.276 1.276 21 H -0.271 1.271 22 C -0.148 4.148 23 C -0.168 4.168 24 C -0.212 4.212 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.136 0.864 28 H 0.145 0.855 29 H 0.159 0.841 30 H 0.403 0.597 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.025 0.975 34 H 0.264 0.736 35 H 0.152 0.848 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -19.152 -6.480 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.295 3.705 4 O -0.426 6.426 5 C -0.141 4.141 6 C 0.075 3.925 7 H 0.078 0.922 8 N -0.367 5.367 9 C 0.320 3.680 10 O -0.457 6.457 11 C 0.002 3.998 12 H 0.044 0.956 13 C -0.172 4.172 14 C -0.562 4.562 15 H 0.065 0.935 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.781 3.219 19 H -0.206 1.206 20 H -0.201 1.201 21 H -0.196 1.196 22 C -0.167 4.167 23 C -0.205 4.205 24 C -0.249 4.249 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.163 0.837 29 H 0.177 0.823 30 H 0.239 0.761 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.169 0.831 36 H 0.099 0.901 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.445 -18.342 -7.022 20.137 hybrid contribution -0.849 1.342 0.329 1.622 sum 3.596 -17.000 -6.693 18.620 Atomic orbital electron populations 1.23470 0.75461 1.05516 1.01949 1.86479 1.24385 1.32716 1.83999 1.24403 0.93377 0.81063 0.71667 1.90810 1.68193 1.37746 1.45898 1.21769 0.85695 0.96559 1.10114 1.20266 0.92963 0.91706 0.87602 0.92248 1.45925 1.70238 1.07259 1.13290 1.21217 0.74106 0.81942 0.90687 1.90443 1.52506 1.64720 1.38074 1.18781 0.95881 0.95253 0.89912 0.95553 1.21511 0.96508 0.98690 1.00482 1.21308 1.45776 0.92660 0.96494 0.93542 1.25610 0.94840 1.02833 0.94844 1.69963 1.47191 1.36446 1.01626 0.85548 0.78037 0.80467 0.77862 1.20568 1.20106 1.19606 1.22765 0.92549 0.98290 1.03096 1.23013 1.01852 1.03377 0.92286 1.23254 1.03379 0.95365 1.02940 0.92916 0.92618 0.84621 0.83739 0.82317 0.76140 0.91396 0.93084 0.95542 0.92671 0.83061 0.90138 0.86593 0.87968 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -7.44 10.57 -51.34 -0.54 -7.99 16 3 C 0.45 11.29 7.82 71.24 0.56 11.85 16 4 O -0.54 -19.44 15.10 21.95 0.33 -19.11 16 5 C -0.10 -1.79 5.34 29.85 0.16 -1.63 16 6 C 0.18 4.97 2.00 44.99 0.09 5.06 16 7 H 0.06 2.13 7.39 -2.39 -0.02 2.12 16 8 N -0.71 -24.84 2.65 -442.55 -1.17 -26.01 16 9 C 0.53 25.27 5.98 87.66 0.52 25.80 16 10 O -0.58 -31.63 12.49 -3.02 -0.04 -31.67 16 11 C 0.02 1.21 2.64 -12.29 -0.03 1.18 16 12 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 13 C -0.11 -5.32 8.67 71.98 0.62 -4.69 16 14 C -0.52 -31.72 8.37 25.60 0.21 -31.50 16 15 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 16 C 0.02 1.01 5.30 84.66 0.45 1.46 16 17 N -0.91 -53.06 11.32 21.45 0.24 -52.81 16 18 Si 0.96 46.68 29.54 68.60 2.03 48.71 16 19 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 22 C -0.15 -3.46 5.71 -10.79 -0.06 -3.52 16 23 C -0.17 -4.37 9.74 30.62 0.30 -4.07 16 24 C -0.21 -6.67 9.82 30.62 0.30 -6.37 16 25 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 27 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.40 12.12 8.02 -92.70 -0.74 11.38 16 31 H 0.07 3.52 6.07 -2.39 -0.01 3.50 16 32 H 0.05 1.91 7.56 -2.39 -0.02 1.89 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 35 H 0.15 2.20 8.11 -2.39 -0.02 2.19 16 36 H 0.08 2.47 6.48 -2.39 -0.02 2.46 16 37 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.07 3.22 5.02 -2.39 -0.01 3.21 16 Total: -1.00 -78.99 321.91 5.48 -73.51 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.32 Total: 20.10 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.32 Total: -4.71 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -0.93 Total: -78.83 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -0.25 Total: -58.77 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.99 5.48 -73.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829869545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.455 kcal (2) G-P(sol) polarization free energy of solvation -78.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds