Wall clock time and date at job start Mon Mar 30 2020 04:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47123 * 2 1 4 4 C 1.50699 * 109.47135 * 239.99861 * 2 1 3 5 5 H 1.08004 * 120.00131 * 239.99868 * 4 2 1 6 6 C 1.37873 * 120.00136 * 60.00216 * 4 2 1 7 7 N 1.31518 * 119.99801 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00105 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47197 * 120.00155 * 8 6 4 11 11 H 1.48506 * 109.47274 * 240.00082 * 8 6 4 12 12 C 1.50707 * 109.47032 * 119.99818 * 2 1 3 13 13 O 1.21286 * 119.99694 * 22.81536 * 12 2 1 14 14 N 1.34770 * 119.99895 * 202.80956 * 12 2 1 15 15 C 1.46923 * 120.63861 * 4.78443 * 14 12 2 16 16 C 1.52760 * 109.05465 * 233.74044 * 15 14 12 17 17 C 1.53065 * 109.38417 * 305.41059 * 16 15 14 18 18 C 1.52967 * 109.51270 * 60.98995 * 17 16 15 19 19 C 1.46959 * 120.63789 * 185.05279 * 14 12 2 20 20 O 1.43673 * 109.46620 * 59.08279 * 18 17 16 21 21 C 1.44809 * 104.78060 * 95.64252 * 20 18 17 22 22 C 1.54916 * 101.72895 * 36.03823 * 21 20 18 23 23 O 1.43268 * 109.70168 * 178.51958 * 18 17 16 24 24 H 1.08998 * 109.47073 * 293.93151 * 1 2 3 25 25 H 1.08997 * 109.47006 * 53.92899 * 1 2 3 26 26 H 1.08999 * 109.47269 * 173.92423 * 1 2 3 27 27 H 0.97001 * 119.99337 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.57894 * 353.58642 * 15 14 12 29 29 H 1.09000 * 109.58113 * 113.99023 * 15 14 12 30 30 H 1.08999 * 109.56791 * 185.37466 * 16 15 14 31 31 H 1.09002 * 109.38833 * 65.33482 * 16 15 14 32 32 H 1.09007 * 109.45923 * 300.98207 * 17 16 15 33 33 H 1.08991 * 109.45661 * 180.99935 * 17 16 15 34 34 H 1.08995 * 109.59524 * 246.39924 * 19 14 12 35 35 H 1.09001 * 109.59274 * 6.69540 * 19 14 12 36 36 H 1.08997 * 110.97593 * 277.92984 * 21 20 18 37 37 H 1.08999 * 111.00770 * 154.16096 * 21 20 18 38 38 H 1.09007 * 110.69575 * 206.09645 * 22 21 20 39 39 H 1.09003 * 110.69483 * 82.89273 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1474 -2.2864 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 1.3216 -1.5103 1.8015 14 7 3.2713 -0.4569 1.6964 15 6 4.1048 0.5838 1.0793 16 6 5.4515 -0.0224 0.6886 17 6 6.0849 -0.6853 1.9143 18 6 5.1720 -1.8040 2.4192 19 6 3.8168 -1.2201 2.8276 20 8 4.9792 -2.7723 1.3755 21 6 5.9629 -3.8015 1.6402 22 6 5.9767 -3.8331 3.1890 23 8 5.7773 -2.4500 3.5456 24 1 -0.3633 0.4169 0.9393 25 1 -0.3633 0.6051 -0.8306 26 1 -0.3634 -1.0219 -0.1088 27 1 0.7091 1.1613 -3.4844 28 1 3.6078 0.9699 0.1894 29 1 4.2647 1.3936 1.7912 30 1 6.1111 0.7621 0.3177 31 1 5.2997 -0.7689 -0.0910 32 1 6.2181 0.0577 2.7008 33 1 7.0539 -1.1027 1.6410 34 1 3.9466 -0.5600 3.6852 35 1 3.1320 -2.0272 3.0881 36 1 6.9393 -3.5184 1.2470 37 1 5.6438 -4.7610 1.2332 38 1 6.9376 -4.1914 3.5584 39 1 5.1624 -4.4501 3.5689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830661728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:24 Heat of formation + Delta-G solvation = -124.256801 kcal Electronic energy + Delta-G solvation = -22398.355687 eV Core-core repulsion = 19113.119255 eV Total energy + Delta-G solvation = -3285.236432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78688 -38.86391 -36.14264 -34.89601 -33.79651 -32.00613 -31.00289 -30.11412 -27.98071 -25.43946 -25.01954 -23.38587 -22.59285 -22.00813 -20.10410 -18.20725 -17.02051 -16.80935 -16.32912 -16.11375 -15.48694 -15.14705 -14.72091 -14.26979 -14.12434 -13.85201 -13.51979 -12.91058 -12.87425 -12.77546 -12.46438 -12.21150 -11.90724 -11.62454 -11.48179 -11.10636 -10.98209 -10.84092 -10.71397 -10.68806 -10.37988 -10.21343 -10.16177 -9.93432 -9.58882 -8.97057 -8.59088 -8.31656 -7.92872 -6.07945 -4.14194 3.25483 3.27104 3.35286 3.40837 3.73405 3.88439 4.05804 4.42688 4.54683 4.76619 4.85645 4.93994 5.13711 5.24157 5.24869 5.35760 5.45825 5.54184 5.67537 5.76844 5.85012 5.88955 5.96932 6.00402 6.12344 6.34010 6.42875 6.64579 6.88421 7.03347 7.04856 7.17527 7.32411 7.61695 7.79735 7.99328 8.19625 8.32653 8.87473 9.26129 9.50976 10.98724 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.006899 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.049977 B = 4057.801606 C = 4505.916016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.503 4.503 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.534 3.466 13 O -0.565 6.565 14 N -0.611 5.611 15 C 0.108 3.892 16 C -0.129 4.129 17 C -0.133 4.133 18 C 0.244 3.756 19 C 0.113 3.887 20 O -0.348 6.348 21 C 0.012 3.988 22 C 0.021 3.979 23 O -0.380 6.380 24 H 0.010 0.990 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.262 0.738 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.373 -3.171 8.165 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.011 3.989 3 H 0.065 0.935 4 C -0.542 4.542 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.327 3.673 13 O -0.443 6.443 14 N -0.346 5.346 15 C -0.015 4.015 16 C -0.167 4.167 17 C -0.171 4.171 18 C 0.166 3.834 19 C -0.011 4.011 20 O -0.268 6.268 21 C -0.065 4.065 22 C -0.055 4.055 23 O -0.301 6.301 24 H 0.029 0.971 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.782 -3.362 8.348 14.826 hybrid contribution 0.653 -0.663 -0.869 1.273 sum 12.435 -4.025 7.479 15.059 Atomic orbital electron populations 1.21575 0.96157 1.00972 0.99094 1.18938 0.94621 0.96251 0.89132 0.93498 1.20806 1.31672 1.12643 0.89052 0.92140 1.24894 0.94850 0.94919 0.98890 1.69915 1.36312 1.22728 1.23549 0.86460 0.78712 0.79750 0.82704 1.19672 1.20924 1.20926 1.21969 0.79173 0.81375 0.84806 1.90516 1.56409 1.37143 1.60195 1.48036 1.16051 1.37397 1.33137 1.21694 0.91176 0.89186 0.99422 1.21770 0.96524 1.00917 0.97479 1.22083 0.98353 0.97465 0.99203 1.23740 0.93438 0.88598 0.77585 1.21552 0.92688 0.97122 0.89748 1.89473 1.55494 1.33322 1.48486 1.24363 0.93817 0.93645 0.94675 1.24182 1.02570 0.83803 0.94956 1.88834 1.81851 1.21355 1.38039 0.97128 0.89859 0.94347 0.92831 0.86914 0.92710 0.90653 0.89962 0.90512 0.91562 0.90681 0.88615 0.90986 0.87559 0.88512 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.28 37.16 0.31 -2.78 16 2 C 0.03 0.80 1.80 -92.92 -0.17 0.63 16 3 H 0.05 1.19 6.39 -51.93 -0.33 0.85 16 4 C -0.50 -13.68 8.26 -34.44 -0.28 -13.96 16 5 H 0.06 1.71 7.74 -52.48 -0.41 1.31 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.41 11.39 55.43 0.63 -23.78 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.53 12.98 6.76 -10.98 -0.07 12.90 16 13 O -0.56 -15.16 15.62 5.55 0.09 -15.08 16 14 N -0.61 -12.27 2.93 -173.06 -0.51 -12.77 16 15 C 0.11 1.85 6.23 -3.93 -0.02 1.82 16 16 C -0.13 -1.94 5.93 -26.82 -0.16 -2.09 16 17 C -0.13 -1.83 5.27 -26.71 -0.14 -1.97 16 18 C 0.24 3.86 1.05 -26.69 -0.03 3.83 16 19 C 0.11 2.02 5.76 -3.73 -0.02 2.00 16 20 O -0.35 -6.07 10.21 -59.04 -0.60 -6.68 16 21 C 0.01 0.14 7.91 38.17 0.30 0.45 16 22 C 0.02 0.24 8.07 38.17 0.31 0.55 16 23 O -0.38 -5.45 10.87 -59.04 -0.64 -6.09 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.08 2.23 6.26 -51.93 -0.32 1.90 16 26 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.11 2.17 5.32 -51.93 -0.28 1.90 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.46 7.63 -51.93 -0.40 1.06 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.91 7.04 -51.93 -0.37 1.55 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -31.83 310.67 -7.33 -39.16 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.88 Total: 1.46 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.08 Total: 3.08 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.12 Total: -36.55 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -1.16 Total: -27.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.83 -7.33 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830661728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.101 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds