Wall clock time and date at job start Mon Mar 30 2020 04:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47123 * 2 1 4 4 C 1.50699 * 109.47135 * 239.99861 * 2 1 3 5 5 H 1.08004 * 120.00131 * 239.99868 * 4 2 1 6 6 C 1.37873 * 120.00136 * 60.00216 * 4 2 1 7 7 N 1.31518 * 119.99801 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00105 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47197 * 120.00155 * 8 6 4 11 11 H 1.48506 * 109.47274 * 240.00082 * 8 6 4 12 12 C 1.50707 * 109.47032 * 119.99818 * 2 1 3 13 13 O 1.21286 * 119.99694 * 22.81536 * 12 2 1 14 14 N 1.34770 * 119.99895 * 202.80956 * 12 2 1 15 15 C 1.46923 * 120.63861 * 4.78443 * 14 12 2 16 16 C 1.52760 * 109.05465 * 233.74044 * 15 14 12 17 17 C 1.53065 * 109.38417 * 305.41059 * 16 15 14 18 18 C 1.52967 * 109.51270 * 60.98995 * 17 16 15 19 19 C 1.46959 * 120.63789 * 185.05279 * 14 12 2 20 20 O 1.43673 * 109.46620 * 59.08279 * 18 17 16 21 21 C 1.44809 * 104.78060 * 95.64252 * 20 18 17 22 22 C 1.54916 * 101.72895 * 36.03823 * 21 20 18 23 23 O 1.43268 * 109.70168 * 178.51958 * 18 17 16 24 24 H 1.08998 * 109.47073 * 293.93151 * 1 2 3 25 25 H 1.08997 * 109.47006 * 53.92899 * 1 2 3 26 26 H 1.08999 * 109.47269 * 173.92423 * 1 2 3 27 27 H 0.97001 * 119.99337 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.57894 * 353.58642 * 15 14 12 29 29 H 1.09000 * 109.58113 * 113.99023 * 15 14 12 30 30 H 1.08999 * 109.56791 * 185.37466 * 16 15 14 31 31 H 1.09002 * 109.38833 * 65.33482 * 16 15 14 32 32 H 1.09007 * 109.45923 * 300.98207 * 17 16 15 33 33 H 1.08991 * 109.45661 * 180.99935 * 17 16 15 34 34 H 1.08995 * 109.59524 * 246.39924 * 19 14 12 35 35 H 1.09001 * 109.59274 * 6.69540 * 19 14 12 36 36 H 1.08997 * 110.97593 * 277.92984 * 21 20 18 37 37 H 1.08999 * 111.00770 * 154.16096 * 21 20 18 38 38 H 1.09007 * 110.69575 * 206.09645 * 22 21 20 39 39 H 1.09003 * 110.69483 * 82.89273 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1474 -2.2864 -3.6037 10 1 1.1679 -1.5867 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 1.3216 -1.5103 1.8015 14 7 3.2713 -0.4569 1.6964 15 6 4.1048 0.5838 1.0793 16 6 5.4515 -0.0224 0.6886 17 6 6.0849 -0.6853 1.9143 18 6 5.1720 -1.8040 2.4192 19 6 3.8168 -1.2201 2.8276 20 8 4.9792 -2.7723 1.3755 21 6 5.9629 -3.8015 1.6402 22 6 5.9767 -3.8331 3.1890 23 8 5.7773 -2.4500 3.5456 24 1 -0.3633 0.4169 0.9393 25 1 -0.3633 0.6051 -0.8306 26 1 -0.3634 -1.0219 -0.1088 27 1 0.7091 1.1613 -3.4844 28 1 3.6078 0.9699 0.1894 29 1 4.2647 1.3936 1.7912 30 1 6.1111 0.7621 0.3177 31 1 5.2997 -0.7689 -0.0910 32 1 6.2181 0.0577 2.7008 33 1 7.0539 -1.1027 1.6410 34 1 3.9466 -0.5600 3.6852 35 1 3.1320 -2.0272 3.0881 36 1 6.9393 -3.5184 1.2470 37 1 5.6438 -4.7610 1.2332 38 1 6.9376 -4.1914 3.5584 39 1 5.1624 -4.4501 3.5689 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830661728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:23 Heat of formation + Delta-G solvation = -145.514603 kcal Electronic energy + Delta-G solvation = -22399.277494 eV Core-core repulsion = 19113.119255 eV Total energy + Delta-G solvation = -3286.158239 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.98576 -40.54074 -37.65340 -36.03503 -35.85347 -33.43568 -32.62597 -31.70904 -29.15209 -27.32062 -26.75085 -24.45700 -24.10935 -23.49377 -21.48949 -19.82318 -18.46196 -18.31349 -18.05864 -17.54338 -16.88793 -16.59153 -16.16462 -15.91241 -15.56502 -15.14935 -14.81613 -14.62133 -14.31362 -14.00805 -13.71882 -13.69846 -13.52033 -13.32991 -12.96606 -12.80977 -12.67209 -12.53247 -12.28867 -12.22076 -12.16961 -11.91876 -11.71289 -11.15589 -11.06455 -10.81289 -10.60463 -10.29234 -9.48139 -8.16067 -6.29201 1.39765 1.42814 1.53690 1.81069 2.08860 2.44587 2.55968 2.89731 3.13410 3.58092 3.68360 3.72552 4.00654 4.08699 4.13379 4.17769 4.24042 4.41519 4.54070 4.56709 4.62485 4.68532 4.73136 4.84713 4.86193 4.95346 4.97414 4.98723 5.04763 5.20194 5.40189 5.48197 5.61086 5.72417 5.86022 6.11838 6.15303 6.54157 6.73328 7.34792 7.44370 8.90405 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.006899 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.049977 B = 4057.801606 C = 4505.916016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.031 3.969 3 H 0.048 0.952 4 C -0.516 4.516 5 H 0.040 0.960 6 C 0.029 3.971 7 N -0.907 5.907 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.528 3.472 13 O -0.602 6.602 14 N -0.604 5.604 15 C 0.101 3.899 16 C -0.121 4.121 17 C -0.125 4.125 18 C 0.246 3.754 19 C 0.108 3.892 20 O -0.391 6.391 21 C 0.005 3.995 22 C 0.020 3.980 23 O -0.387 6.387 24 H 0.022 0.978 25 H 0.072 0.928 26 H 0.017 0.983 27 H 0.267 0.733 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.135 0.865 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.976 -2.937 8.381 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.010 3.990 3 H 0.066 0.934 4 C -0.554 4.554 5 H 0.059 0.941 6 C -0.171 4.171 7 N -0.545 5.545 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.320 3.680 13 O -0.484 6.484 14 N -0.338 5.338 15 C -0.020 4.020 16 C -0.160 4.160 17 C -0.163 4.163 18 C 0.168 3.832 19 C -0.016 4.016 20 O -0.312 6.312 21 C -0.071 4.071 22 C -0.056 4.056 23 O -0.307 6.307 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.436 -3.110 8.574 17.076 hybrid contribution -0.139 -0.765 -0.892 1.184 sum 14.297 -3.875 7.682 16.686 Atomic orbital electron populations 1.21438 0.96788 0.99391 0.99193 1.18856 0.94195 0.96332 0.89589 0.93403 1.20793 1.32032 1.12335 0.90268 0.94122 1.25540 0.94843 0.95503 1.01242 1.69985 1.36611 1.23430 1.24464 0.85543 0.78240 0.78720 0.79391 1.20137 1.20690 1.19319 1.21701 0.80622 0.81100 0.84557 1.90483 1.57931 1.38767 1.61251 1.47987 1.14985 1.37566 1.33223 1.21916 0.91493 0.89403 0.99229 1.21706 0.95876 1.00985 0.97388 1.22049 0.98315 0.97021 0.98870 1.23661 0.92464 0.89244 0.77834 1.21747 0.93581 0.96654 0.89622 1.89439 1.57561 1.34957 1.49287 1.24662 0.93749 0.93065 0.95602 1.24418 1.04524 0.82351 0.94311 1.88811 1.81422 1.22848 1.37648 0.95891 0.90971 0.96358 0.92380 0.89524 0.89163 0.87380 0.93187 0.88373 0.89589 0.88252 0.91593 0.88952 0.86535 0.84739 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.84 8.28 71.98 0.60 -5.24 16 2 C 0.03 1.63 1.80 -12.28 -0.02 1.61 16 3 H 0.05 2.48 6.39 -2.39 -0.02 2.46 16 4 C -0.52 -28.74 8.26 25.60 0.21 -28.53 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.58 5.30 84.65 0.45 2.02 16 7 N -0.91 -50.10 11.39 21.45 0.24 -49.86 16 8 Si 0.96 43.21 29.54 68.60 2.03 45.23 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 C 0.53 26.42 6.76 87.66 0.59 27.02 16 13 O -0.60 -33.65 15.62 -3.05 -0.05 -33.70 16 14 N -0.60 -24.33 2.93 -819.82 -2.40 -26.73 16 15 C 0.10 3.35 6.23 86.22 0.54 3.88 16 16 C -0.12 -3.40 5.93 30.54 0.18 -3.22 16 17 C -0.12 -3.03 5.27 30.60 0.16 -2.87 16 18 C 0.25 7.38 1.05 30.62 0.03 7.41 16 19 C 0.11 3.80 5.76 86.33 0.50 4.30 16 20 O -0.39 -13.49 10.21 -126.22 -1.29 -14.78 16 21 C 0.00 0.11 7.91 72.64 0.57 0.69 16 22 C 0.02 0.39 8.07 72.64 0.59 0.98 16 23 O -0.39 -10.14 10.87 -126.22 -1.37 -11.51 16 24 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 3.95 6.26 -2.39 -0.01 3.94 16 26 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 27 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.09 3.35 5.32 -2.39 -0.01 3.33 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 1.74 7.63 -2.39 -0.02 1.72 16 32 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.07 2.71 7.04 -2.39 -0.02 2.70 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -70.40 310.67 2.60 -67.80 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.04 Total: 15.50 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 4.40 Total: 8.04 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -2.16 Total: -76.59 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -2.71 Total: -59.99 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -70.40 2.60 -67.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830661728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.713 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds