Wall clock time and date at job start Mon Mar 30 2020 04:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20830 * 120.00276 * 2 1 4 4 O 1.34229 * 119.99611 * 180.02562 * 2 1 3 5 5 C 1.45203 * 116.99660 * 179.97438 * 4 2 1 6 6 C 1.53049 * 109.44841 * 270.05674 * 5 4 2 7 7 C 1.53184 * 109.31145 * 178.61903 * 6 5 4 8 8 N 1.46932 * 108.77474 * 54.64415 * 7 6 5 9 9 C 1.34770 * 120.63487 * 126.36833 * 8 7 6 10 10 O 1.21278 * 120.00226 * 175.34979 * 9 8 7 11 11 C 1.50700 * 119.99901 * 355.33941 * 9 8 7 12 12 H 1.08998 * 109.47459 * 324.37525 * 11 9 8 13 13 C 1.53009 * 109.46808 * 84.37522 * 11 9 8 14 14 C 1.50698 * 109.47514 * 204.37030 * 11 9 8 15 15 H 1.08009 * 119.99417 * 0.02562 * 14 11 9 16 16 C 1.37871 * 120.00424 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99718 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00332 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47097 * 89.99681 * 18 16 14 20 20 H 1.48494 * 109.47300 * 209.99973 * 18 16 14 21 21 H 1.48499 * 109.46885 * 330.00143 * 18 16 14 22 22 C 1.46932 * 118.73250 * 306.38456 * 8 7 6 23 23 C 1.53044 * 109.46009 * 150.00230 * 5 4 2 24 24 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46833 * 300.00050 * 1 2 3 26 26 H 1.09004 * 109.47466 * 59.99192 * 1 2 3 27 27 H 1.08994 * 109.46133 * 30.02561 * 5 4 2 28 28 H 1.09002 * 109.49153 * 58.67220 * 6 5 4 29 29 H 1.08992 * 109.49812 * 298.57914 * 6 5 4 30 30 H 1.08998 * 109.59545 * 294.85481 * 7 6 5 31 31 H 1.09006 * 109.58725 * 174.42264 * 7 6 5 32 32 H 1.09002 * 109.46794 * 186.30177 * 13 11 9 33 33 H 1.09001 * 109.46600 * 306.30360 * 13 11 9 34 34 H 1.09002 * 109.47237 * 66.30023 * 13 11 9 35 35 H 0.97002 * 119.99712 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.58078 * 173.39496 * 22 8 7 37 37 H 1.08995 * 109.58693 * 293.68135 * 22 8 7 38 38 H 1.09004 * 109.49945 * 61.41645 * 23 5 4 39 39 H 1.09005 * 109.52073 * 301.33579 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1780 -1.1625 -0.0005 5 6 3.6281 -1.0865 -0.0011 6 6 4.1363 -1.0581 -1.4444 7 6 5.6639 -0.9432 -1.4414 8 7 6.2186 -2.0337 -0.6278 9 6 7.1562 -2.8593 -1.1334 10 8 7.6672 -3.7019 -0.4265 11 6 7.5695 -2.7356 -2.5774 12 1 6.7034 -2.4650 -3.1813 13 6 8.6422 -1.6525 -2.7098 14 6 8.1239 -4.0527 -3.0559 15 1 8.1717 -4.8952 -2.3818 16 6 8.5700 -4.1821 -4.3540 17 7 8.5122 -3.1559 -5.1745 18 14 9.2565 -5.8149 -4.9473 19 1 8.1561 -6.6409 -5.5060 20 1 10.2753 -5.5705 -5.9996 21 1 9.8838 -6.5314 -3.8079 22 6 5.7312 -2.2073 0.7474 23 6 4.2029 -2.3080 0.7199 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 3.9444 -0.1791 0.5132 28 1 3.7080 -0.2010 -1.9640 29 1 3.8415 -1.9764 -1.9521 30 1 5.9574 0.0162 -1.0154 31 1 6.0383 -1.0221 -2.4621 32 1 8.8606 -1.4845 -3.7644 33 1 8.2811 -0.7269 -2.2614 34 1 9.5489 -1.9747 -2.1977 35 1 8.8264 -3.2469 -6.0877 36 1 6.1500 -3.1202 1.1709 37 1 6.0324 -1.3521 1.3524 38 1 3.9075 -3.2146 0.1918 39 1 3.8221 -2.3411 1.7407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831061262.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:32 Heat of formation + Delta-G solvation = -132.605597 kcal Electronic energy + Delta-G solvation = -21261.827740 eV Core-core repulsion = 17976.229277 eV Total energy + Delta-G solvation = -3285.598463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73588 -39.39725 -37.25181 -35.83354 -33.85145 -32.13640 -31.22980 -30.30067 -29.95053 -25.21373 -25.12379 -23.37278 -22.45560 -21.15880 -20.42186 -18.56015 -17.82462 -16.68300 -16.34954 -16.22792 -15.71600 -15.21187 -14.71594 -14.38279 -14.10172 -13.78829 -13.62343 -13.12628 -12.94755 -12.91198 -12.58361 -12.37351 -12.13518 -11.74094 -11.57989 -11.40544 -11.23387 -10.96998 -10.75665 -10.68802 -10.66525 -10.57906 -10.28607 -10.18692 -10.00797 -8.98438 -8.60424 -8.31786 -8.16641 -6.04756 -4.07493 2.04180 2.57309 3.32733 3.38666 3.44637 3.58550 3.67780 4.45640 4.50734 4.62871 4.69887 4.89483 4.99182 5.04036 5.10807 5.28785 5.34668 5.35333 5.44632 5.66277 5.71016 5.76770 5.85652 5.99841 6.07112 6.18846 6.23864 6.48593 6.65341 6.82723 6.96284 7.04563 7.43815 7.61613 7.74791 7.94889 8.06200 8.35373 8.98127 9.17772 9.57350 11.03191 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029687 B = 0.004318 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.937768 B = 6483.632116 C = 6706.822332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.457 3.543 3 O -0.516 6.516 4 O -0.353 6.353 5 C 0.091 3.909 6 C -0.150 4.150 7 C 0.114 3.886 8 N -0.630 5.630 9 C 0.525 3.475 10 O -0.545 6.545 11 C 0.031 3.969 12 H 0.049 0.951 13 C -0.129 4.129 14 C -0.501 4.501 15 H 0.069 0.931 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.115 3.885 23 C -0.128 4.128 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.012 0.988 34 H 0.036 0.964 35 H 0.261 0.739 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.619 7.042 8.836 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.301 3.699 3 O -0.405 6.405 4 O -0.270 6.270 5 C 0.037 3.963 6 C -0.189 4.189 7 C -0.010 4.010 8 N -0.366 5.366 9 C 0.317 3.683 10 O -0.421 6.421 11 C 0.010 3.990 12 H 0.066 0.934 13 C -0.187 4.187 14 C -0.539 4.539 15 H 0.088 0.912 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.727 3.273 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.009 4.009 23 C -0.167 4.167 24 H 0.109 0.891 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.031 0.969 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.042 6.899 9.027 18.062 hybrid contribution 0.268 -0.603 -0.401 0.772 sum -13.775 6.296 8.625 17.429 Atomic orbital electron populations 1.21586 0.87466 1.05715 1.05655 1.23831 0.92153 0.81948 0.72012 1.90686 1.70863 1.33136 1.45805 1.86579 1.22703 1.34520 1.83161 1.22831 0.75394 1.00305 0.97760 1.22362 0.97097 1.03821 0.95581 1.21674 0.91186 0.89813 0.98303 1.48434 1.42293 1.32779 1.13106 1.22052 0.76285 0.78172 0.91761 1.90522 1.54064 1.35687 1.61820 1.18905 0.96569 0.97899 0.85659 0.93364 1.21718 0.98302 0.94624 1.04065 1.21074 1.40764 0.95737 0.96356 0.91242 1.24928 0.95681 0.96936 0.96527 1.69881 1.47756 1.29788 1.06029 0.86460 0.78760 0.83678 0.78392 1.20674 1.21224 1.19716 1.21382 0.91423 1.03152 0.84928 1.22035 0.96026 0.97668 1.00929 0.89090 0.87928 0.87814 0.89663 0.90491 0.90066 0.91819 0.87451 0.89110 0.96924 0.94503 0.92927 0.88405 0.92155 0.90148 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.42 36.00 0.38 -0.53 16 2 C 0.46 5.09 8.04 36.00 0.29 5.38 16 3 O -0.52 -7.42 16.32 -18.75 -0.31 -7.73 16 4 O -0.35 -4.28 9.88 -39.25 -0.39 -4.67 16 5 C 0.09 1.18 2.42 -26.68 -0.06 1.12 16 6 C -0.15 -2.06 5.72 -26.61 -0.15 -2.22 16 7 C 0.11 1.76 5.78 -3.71 -0.02 1.74 16 8 N -0.63 -11.38 2.97 -172.77 -0.51 -11.90 16 9 C 0.53 12.12 6.80 -10.99 -0.07 12.05 16 10 O -0.55 -14.25 15.23 5.56 0.08 -14.17 16 11 C 0.03 0.76 1.78 -92.92 -0.17 0.60 16 12 H 0.05 1.21 6.51 -51.93 -0.34 0.87 16 13 C -0.13 -3.04 8.62 37.16 0.32 -2.72 16 14 C -0.50 -14.18 8.33 -34.44 -0.29 -14.47 16 15 H 0.07 2.07 7.02 -52.48 -0.37 1.71 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.90 -24.95 11.39 55.43 0.63 -24.32 16 18 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.11 1.71 6.42 -3.71 -0.02 1.69 16 23 C -0.13 -1.62 5.74 -26.61 -0.15 -1.78 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 1.13 7.16 -51.93 -0.37 0.76 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.11 1.81 5.15 -51.93 -0.27 1.54 16 32 H 0.09 2.29 6.26 -51.93 -0.33 1.97 16 33 H 0.01 0.24 7.39 -51.93 -0.38 -0.14 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.10 1.60 7.03 -51.93 -0.37 1.24 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -32.77 318.22 -6.55 -39.32 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.78 Total: -0.48 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.05 Total: 2.43 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.12 Total: -36.21 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.61 Total: -26.56 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.77 -6.55 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831061262.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.288 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds