Wall clock time and date at job start Mon Mar 30 2020 04:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20830 * 120.00276 * 2 1 4 4 O 1.34229 * 119.99611 * 180.02562 * 2 1 3 5 5 C 1.45203 * 116.99660 * 179.97438 * 4 2 1 6 6 C 1.53049 * 109.44841 * 270.05674 * 5 4 2 7 7 C 1.53184 * 109.31145 * 178.61903 * 6 5 4 8 8 N 1.46932 * 108.77474 * 54.64415 * 7 6 5 9 9 C 1.34770 * 120.63487 * 126.36833 * 8 7 6 10 10 O 1.21278 * 120.00226 * 175.34979 * 9 8 7 11 11 C 1.50700 * 119.99901 * 355.33941 * 9 8 7 12 12 H 1.08998 * 109.47459 * 324.37525 * 11 9 8 13 13 C 1.53009 * 109.46808 * 84.37522 * 11 9 8 14 14 C 1.50698 * 109.47514 * 204.37030 * 11 9 8 15 15 H 1.08009 * 119.99417 * 0.02562 * 14 11 9 16 16 C 1.37871 * 120.00424 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99718 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00332 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47097 * 89.99681 * 18 16 14 20 20 H 1.48494 * 109.47300 * 209.99973 * 18 16 14 21 21 H 1.48499 * 109.46885 * 330.00143 * 18 16 14 22 22 C 1.46932 * 118.73250 * 306.38456 * 8 7 6 23 23 C 1.53044 * 109.46009 * 150.00230 * 5 4 2 24 24 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46833 * 300.00050 * 1 2 3 26 26 H 1.09004 * 109.47466 * 59.99192 * 1 2 3 27 27 H 1.08994 * 109.46133 * 30.02561 * 5 4 2 28 28 H 1.09002 * 109.49153 * 58.67220 * 6 5 4 29 29 H 1.08992 * 109.49812 * 298.57914 * 6 5 4 30 30 H 1.08998 * 109.59545 * 294.85481 * 7 6 5 31 31 H 1.09006 * 109.58725 * 174.42264 * 7 6 5 32 32 H 1.09002 * 109.46794 * 186.30177 * 13 11 9 33 33 H 1.09001 * 109.46600 * 306.30360 * 13 11 9 34 34 H 1.09002 * 109.47237 * 66.30023 * 13 11 9 35 35 H 0.97002 * 119.99712 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.58078 * 173.39496 * 22 8 7 37 37 H 1.08995 * 109.58693 * 293.68135 * 22 8 7 38 38 H 1.09004 * 109.49945 * 61.41645 * 23 5 4 39 39 H 1.09005 * 109.52073 * 301.33579 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1780 -1.1625 -0.0005 5 6 3.6281 -1.0865 -0.0011 6 6 4.1363 -1.0581 -1.4444 7 6 5.6639 -0.9432 -1.4414 8 7 6.2186 -2.0337 -0.6278 9 6 7.1562 -2.8593 -1.1334 10 8 7.6672 -3.7019 -0.4265 11 6 7.5695 -2.7356 -2.5774 12 1 6.7034 -2.4650 -3.1813 13 6 8.6422 -1.6525 -2.7098 14 6 8.1239 -4.0527 -3.0559 15 1 8.1717 -4.8952 -2.3818 16 6 8.5700 -4.1821 -4.3540 17 7 8.5122 -3.1559 -5.1745 18 14 9.2565 -5.8149 -4.9473 19 1 8.1561 -6.6409 -5.5060 20 1 10.2753 -5.5705 -5.9996 21 1 9.8838 -6.5314 -3.8079 22 6 5.7312 -2.2073 0.7474 23 6 4.2029 -2.3080 0.7199 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 3.9444 -0.1791 0.5132 28 1 3.7080 -0.2010 -1.9640 29 1 3.8415 -1.9764 -1.9521 30 1 5.9574 0.0162 -1.0154 31 1 6.0383 -1.0221 -2.4621 32 1 8.8606 -1.4845 -3.7644 33 1 8.2811 -0.7269 -2.2614 34 1 9.5489 -1.9747 -2.1977 35 1 8.8264 -3.2469 -6.0877 36 1 6.1500 -3.1202 1.1709 37 1 6.0324 -1.3521 1.3524 38 1 3.9075 -3.2146 0.1918 39 1 3.8221 -2.3411 1.7407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831061262.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:32 Heat of formation + Delta-G solvation = -152.781748 kcal Electronic energy + Delta-G solvation = -21262.702644 eV Core-core repulsion = 17976.229277 eV Total energy + Delta-G solvation = -3286.473366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.75349 -40.89967 -38.53848 -37.05382 -35.86392 -33.56956 -32.59778 -31.75847 -30.87522 -27.27317 -26.50780 -24.67198 -23.98612 -22.22024 -21.67042 -20.08241 -18.78648 -18.41804 -17.91530 -17.31702 -17.00704 -16.80982 -16.30653 -16.02399 -15.20209 -15.06631 -14.77180 -14.62413 -14.44531 -14.10461 -13.60635 -13.42986 -13.34401 -13.16102 -12.95856 -12.82372 -12.71124 -12.67847 -12.57991 -12.34307 -12.20320 -12.05556 -11.77447 -11.58120 -11.31616 -11.03999 -10.61172 -10.26029 -9.66051 -8.16717 -6.26746 1.20116 1.40007 1.41277 1.52799 1.69362 1.89687 2.12220 2.44951 3.13289 3.53046 3.60649 3.70731 3.91699 3.94214 4.11055 4.21465 4.35729 4.42233 4.57410 4.59407 4.64705 4.69272 4.74595 4.77312 4.84091 4.93465 4.96504 4.97259 5.01834 5.13624 5.43433 5.56663 5.62214 5.72202 5.90248 6.15655 6.51573 6.74954 6.78944 7.36366 7.45871 8.89615 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029687 B = 0.004318 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.937768 B = 6483.632116 C = 6706.822332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.453 3.547 3 O -0.552 6.552 4 O -0.355 6.355 5 C 0.094 3.906 6 C -0.143 4.143 7 C 0.110 3.890 8 N -0.621 5.621 9 C 0.524 3.476 10 O -0.586 6.586 11 C 0.027 3.973 12 H 0.045 0.955 13 C -0.115 4.115 14 C -0.530 4.530 15 H 0.044 0.956 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.955 3.045 19 H -0.272 1.272 20 H -0.274 1.274 21 H -0.280 1.280 22 C 0.111 3.889 23 C -0.118 4.118 24 H 0.106 0.894 25 H 0.121 0.879 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.019 0.981 35 H 0.266 0.734 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.328 7.849 9.324 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.299 3.701 3 O -0.443 6.443 4 O -0.271 6.271 5 C 0.039 3.961 6 C -0.181 4.181 7 C -0.012 4.012 8 N -0.356 5.356 9 C 0.315 3.685 10 O -0.466 6.466 11 C 0.006 3.994 12 H 0.062 0.938 13 C -0.174 4.174 14 C -0.568 4.568 15 H 0.062 0.938 16 C -0.177 4.177 17 N -0.548 5.548 18 Si 0.780 3.220 19 H -0.197 1.197 20 H -0.199 1.199 21 H -0.205 1.205 22 C -0.012 4.012 23 C -0.156 4.156 24 H 0.125 0.875 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.805 7.742 9.515 20.006 hybrid contribution 0.721 -0.786 -0.537 1.194 sum -15.084 6.955 8.978 18.881 Atomic orbital electron populations 1.21746 0.83447 1.07327 1.07182 1.24863 0.93821 0.80957 0.70472 1.90673 1.71872 1.34148 1.47611 1.86607 1.21964 1.35353 1.83223 1.22679 0.76335 1.00251 0.96798 1.22259 0.95667 1.03630 0.96575 1.21823 0.92339 0.89760 0.97280 1.48347 1.40649 1.31966 1.14590 1.21636 0.77286 0.78582 0.90959 1.90493 1.56048 1.37644 1.62407 1.18822 0.96572 0.96829 0.87150 0.93765 1.21526 0.97300 0.95669 1.02857 1.21218 1.42260 0.96664 0.96702 0.93803 1.25569 0.95681 1.00001 0.96436 1.69951 1.47642 1.30957 1.06252 0.85604 0.78494 0.80109 0.77758 1.19698 1.19940 1.20507 1.21605 0.92983 1.03511 0.83053 1.21921 0.94093 0.97065 1.02527 0.87488 0.86029 0.86382 0.89457 0.89527 0.91261 0.89403 0.89022 0.90872 0.93628 0.96185 0.92517 0.90044 0.89563 0.91393 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 10.42 71.24 0.74 -0.52 16 2 C 0.45 9.01 8.04 71.24 0.57 9.58 16 3 O -0.55 -14.83 16.32 21.95 0.36 -14.47 16 4 O -0.35 -7.79 9.88 -51.41 -0.51 -8.29 16 5 C 0.09 2.23 2.42 30.63 0.07 2.31 16 6 C -0.14 -3.74 5.72 30.67 0.18 -3.56 16 7 C 0.11 3.28 5.78 86.36 0.50 3.78 16 8 N -0.62 -22.14 2.97 -818.91 -2.43 -24.57 16 9 C 0.52 24.62 6.80 87.66 0.60 25.21 16 10 O -0.59 -31.61 15.23 -3.02 -0.05 -31.65 16 11 C 0.03 1.39 1.78 -12.28 -0.02 1.37 16 12 H 0.04 2.27 6.51 -2.39 -0.02 2.25 16 13 C -0.12 -5.48 8.62 71.99 0.62 -4.86 16 14 C -0.53 -30.89 8.33 25.60 0.21 -30.68 16 15 H 0.04 2.73 7.02 -2.91 -0.02 2.71 16 16 C 0.02 1.27 5.30 84.65 0.45 1.72 16 17 N -0.91 -50.87 11.39 21.45 0.24 -50.63 16 18 Si 0.95 44.87 29.54 68.60 2.03 46.89 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 22 C 0.11 3.17 6.42 86.36 0.55 3.73 16 23 C -0.12 -2.76 5.74 30.67 0.18 -2.59 16 24 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 2.09 7.16 -2.39 -0.02 2.07 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.09 3.05 5.15 -2.38 -0.01 3.04 16 32 H 0.07 3.73 6.26 -2.39 -0.01 3.71 16 33 H 0.04 1.80 7.39 -2.39 -0.02 1.78 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 36 H 0.08 2.65 7.03 -2.39 -0.02 2.63 16 37 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 1.78 8.14 -2.38 -0.02 1.77 16 39 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -71.96 318.22 5.33 -66.63 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.04 Total: 10.61 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 4.65 Total: 5.49 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -2.19 Total: -75.20 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -0.20 Total: -54.42 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.96 5.33 -66.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831061262.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.151 kcal (2) G-P(sol) polarization free energy of solvation -71.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds