Wall clock time and date at job start Mon Mar 30 2020 04:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47084 * 2 1 4 4 C 1.50698 * 109.47202 * 119.99982 * 2 1 3 5 5 H 1.08004 * 119.99840 * 119.99998 * 4 2 1 6 6 C 1.37877 * 119.99950 * 300.00023 * 4 2 1 7 7 N 1.31514 * 119.99970 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99627 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47378 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47010 * 120.00300 * 8 6 4 11 11 H 1.48505 * 109.46867 * 239.99531 * 8 6 4 12 12 C 1.50705 * 109.46808 * 240.00392 * 2 1 3 13 13 O 1.21285 * 119.99588 * 239.99982 * 12 2 1 14 14 N 1.34771 * 120.00314 * 59.99540 * 12 2 1 15 15 C 1.46503 * 119.99872 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.46924 * 180.02562 * 15 14 12 17 17 H 1.09001 * 110.55153 * 307.88407 * 16 15 14 18 18 C 1.54964 * 110.62021 * 185.00429 * 16 15 14 19 19 C 1.54547 * 102.16815 * 203.92296 * 18 16 15 20 20 H 1.09005 * 112.84942 * 258.77907 * 19 18 16 21 21 C 1.54420 * 108.94144 * 131.85579 * 19 18 16 22 22 O 1.44769 * 104.35790 * 223.03806 * 21 19 18 23 23 C 1.44572 * 104.45229 * 43.15074 * 22 21 19 24 24 C 1.54676 * 104.81254 * 317.85331 * 23 22 21 25 25 H 1.09000 * 112.31548 * 262.42737 * 24 23 22 26 26 O 1.43735 * 108.41026 * 137.83120 * 24 23 22 27 27 H 1.09002 * 109.47453 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47228 * 299.99991 * 1 2 3 29 29 H 1.08998 * 109.47629 * 59.99924 * 1 2 3 30 30 H 0.97004 * 119.99732 * 180.02562 * 7 6 4 31 31 H 0.96999 * 120.00041 * 0.02562 * 14 12 2 32 32 H 1.08999 * 109.47045 * 60.00402 * 15 14 12 33 33 H 1.08995 * 109.47264 * 300.00355 * 15 14 12 34 34 H 1.08998 * 110.86725 * 85.74782 * 18 16 15 35 35 H 1.09006 * 110.85889 * 322.09020 * 18 16 15 36 36 H 1.09001 * 110.47155 * 341.66568 * 21 19 18 37 37 H 1.09004 * 110.47244 * 104.14003 * 21 19 18 38 38 H 1.09002 * 110.38900 * 198.98636 * 23 22 21 39 39 H 1.09000 * 110.38936 * 76.71707 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1474 -2.2863 3.6037 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5866 4.8165 12 6 2.0322 -0.7104 -1.2306 13 8 2.7295 -1.6965 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.1954 -0.9402 -3.6508 16 6 1.6857 -0.2187 -4.9000 17 1 0.6049 -0.0857 -4.8509 18 6 2.0820 -0.9973 -6.1799 19 6 2.0644 0.1127 -7.2551 20 1 1.1609 0.0971 -7.8648 21 6 3.3652 0.0293 -8.0830 22 8 3.7866 1.4066 -8.2291 23 6 3.5891 1.9853 -6.9191 24 6 2.2276 1.4278 -6.4417 25 1 1.4100 2.1274 -6.6155 26 8 2.3468 1.0637 -5.0563 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7087 1.1613 3.4844 31 1 1.1492 0.5389 -2.5436 32 1 1.8324 -1.9680 -3.6510 33 1 3.2853 -0.9398 -3.6507 34 1 1.3476 -1.7699 -6.4074 35 1 3.0795 -1.4256 -6.0804 36 1 4.1218 -0.5441 -7.5474 37 1 3.1688 -0.4172 -9.0578 38 1 3.5518 3.0727 -6.9860 39 1 4.3851 1.6743 -6.2426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831225730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:45 Heat of formation + Delta-G solvation = -131.107405 kcal Electronic energy + Delta-G solvation = -20832.883006 eV Core-core repulsion = 17547.349509 eV Total energy + Delta-G solvation = -3285.533496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86872 -38.76073 -37.48005 -34.18868 -33.68074 -32.78378 -30.91135 -29.92393 -28.38635 -25.67985 -25.08854 -23.10127 -22.34387 -21.39108 -20.75535 -19.23892 -17.55136 -16.69030 -16.23478 -16.11907 -15.83415 -15.61366 -15.19879 -14.82450 -14.38386 -14.17199 -13.48504 -13.41355 -12.91290 -12.77367 -12.64847 -12.22371 -12.18354 -11.59969 -11.49930 -11.35078 -11.19655 -11.01509 -10.98171 -10.68355 -10.62795 -10.25252 -10.21525 -9.92867 -9.87751 -8.92566 -8.58719 -8.41491 -8.29303 -5.99963 -4.02793 3.28196 3.34413 3.41750 3.50223 3.59094 3.78197 3.89062 4.11677 4.30109 4.39874 4.50644 4.67416 4.77169 4.83454 4.89710 5.05271 5.15145 5.29803 5.33382 5.36702 5.45455 5.53048 5.56546 5.67305 5.76555 5.93173 6.23951 6.32554 6.65183 6.68852 6.86274 6.96222 7.10291 7.51933 7.79158 8.02760 8.18839 8.49162 9.06720 9.28169 9.62691 11.07769 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043537 B = 0.003470 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.973384 B = 8066.324314 C = 8163.651203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.053 0.947 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.520 3.480 13 O -0.549 6.549 14 N -0.744 5.744 15 C 0.128 3.872 16 C 0.067 3.933 17 H 0.080 0.920 18 C -0.142 4.142 19 C -0.154 4.154 20 H 0.105 0.895 21 C 0.051 3.949 22 O -0.373 6.373 23 C 0.041 3.959 24 C 0.045 3.955 25 H 0.094 0.906 26 O -0.358 6.358 27 H 0.030 0.970 28 H 0.093 0.907 29 H 0.011 0.989 30 H 0.260 0.740 31 H 0.398 0.602 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 0.813 -21.171 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.425 6.425 14 N -0.398 5.398 15 C 0.003 3.997 16 C 0.009 3.991 17 H 0.098 0.902 18 C -0.180 4.180 19 C -0.172 4.172 20 H 0.123 0.877 21 C -0.026 4.026 22 O -0.292 6.292 23 C -0.036 4.036 24 C -0.014 4.014 25 H 0.112 0.888 26 O -0.278 6.278 27 H 0.049 0.951 28 H 0.111 0.889 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.232 0.768 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.025 0.413 -20.957 20.961 hybrid contribution -0.256 -0.174 0.749 0.810 sum -0.231 0.239 -20.208 20.211 Atomic orbital electron populations 1.21734 0.96579 0.99723 1.00908 1.18878 0.94135 0.96908 0.89373 0.92951 1.21199 1.30780 1.12745 0.89015 0.90744 1.24957 0.95168 0.95094 0.99118 1.69886 1.37252 1.23173 1.23368 0.86405 0.78602 0.79787 0.82504 1.19571 1.21059 1.21087 1.21972 0.78391 0.84224 0.84463 1.90525 1.38081 1.27064 1.86823 1.46217 1.55576 1.32701 1.05333 1.21203 0.99953 0.95561 0.82962 1.23644 0.97224 0.83234 0.94961 0.90236 1.23176 1.03791 0.97674 0.93323 1.23898 1.00296 0.95152 0.97896 0.87691 1.23627 0.93704 0.84556 1.00714 1.89293 1.86765 1.23316 1.29806 1.23691 0.95802 0.99414 0.84676 1.24249 0.98499 0.96109 0.82496 0.88838 1.89137 1.77629 1.36851 1.24135 0.95057 0.88864 0.96956 0.93063 0.76775 0.90668 0.91334 0.89373 0.89518 0.91409 0.88745 0.88317 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.50 -14.39 8.37 -34.44 -0.29 -14.68 16 5 H 0.07 2.27 6.75 -52.48 -0.35 1.91 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.48 11.32 55.43 0.63 -24.86 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.52 12.09 7.15 -10.99 -0.08 12.01 16 13 O -0.55 -14.55 15.46 5.55 0.09 -14.46 16 14 N -0.74 -13.24 5.45 -60.29 -0.33 -13.56 16 15 C 0.13 1.86 5.42 -4.04 -0.02 1.84 16 16 C 0.07 0.73 3.36 -25.69 -0.09 0.65 16 17 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.14 -1.16 6.13 -24.88 -0.15 -1.31 16 19 C -0.15 -1.19 4.19 -87.74 -0.37 -1.56 16 20 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 21 C 0.05 0.41 7.14 37.90 0.27 0.68 16 22 O -0.37 -3.92 11.70 -35.23 -0.41 -4.33 16 23 C 0.04 0.40 7.31 38.04 0.28 0.68 16 24 C 0.04 0.43 4.59 -24.53 -0.11 0.32 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 O -0.36 -4.43 10.79 -35.23 -0.38 -4.81 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 29 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.40 6.36 7.89 -40.82 -0.32 6.04 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.72 7.10 -51.93 -0.37 0.35 16 36 H 0.07 0.54 7.20 -51.93 -0.37 0.16 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.79 8.00 -51.93 -0.42 0.38 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -32.76 316.37 -7.14 -39.89 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.90 Total: 2.48 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.57 Total: -2.12 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.30 Total: -38.42 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.71 Total: -23.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.76 -7.14 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831225730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.216 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds