Wall clock time and date at job start Mon Mar 30 2020 04:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47084 * 2 1 4 4 C 1.50698 * 109.47202 * 119.99982 * 2 1 3 5 5 H 1.08004 * 119.99840 * 119.99998 * 4 2 1 6 6 C 1.37877 * 119.99950 * 300.00023 * 4 2 1 7 7 N 1.31514 * 119.99970 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99627 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47378 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47010 * 120.00300 * 8 6 4 11 11 H 1.48505 * 109.46867 * 239.99531 * 8 6 4 12 12 C 1.50705 * 109.46808 * 240.00392 * 2 1 3 13 13 O 1.21285 * 119.99588 * 239.99982 * 12 2 1 14 14 N 1.34771 * 120.00314 * 59.99540 * 12 2 1 15 15 C 1.46503 * 119.99872 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.46924 * 180.02562 * 15 14 12 17 17 H 1.09001 * 110.55153 * 307.88407 * 16 15 14 18 18 C 1.54964 * 110.62021 * 185.00429 * 16 15 14 19 19 C 1.54547 * 102.16815 * 203.92296 * 18 16 15 20 20 H 1.09005 * 112.84942 * 258.77907 * 19 18 16 21 21 C 1.54420 * 108.94144 * 131.85579 * 19 18 16 22 22 O 1.44769 * 104.35790 * 223.03806 * 21 19 18 23 23 C 1.44572 * 104.45229 * 43.15074 * 22 21 19 24 24 C 1.54676 * 104.81254 * 317.85331 * 23 22 21 25 25 H 1.09000 * 112.31548 * 262.42737 * 24 23 22 26 26 O 1.43735 * 108.41026 * 137.83120 * 24 23 22 27 27 H 1.09002 * 109.47453 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47228 * 299.99991 * 1 2 3 29 29 H 1.08998 * 109.47629 * 59.99924 * 1 2 3 30 30 H 0.97004 * 119.99732 * 180.02562 * 7 6 4 31 31 H 0.96999 * 120.00041 * 0.02562 * 14 12 2 32 32 H 1.08999 * 109.47045 * 60.00402 * 15 14 12 33 33 H 1.08995 * 109.47264 * 300.00355 * 15 14 12 34 34 H 1.08998 * 110.86725 * 85.74782 * 18 16 15 35 35 H 1.09006 * 110.85889 * 322.09020 * 18 16 15 36 36 H 1.09001 * 110.47155 * 341.66568 * 21 19 18 37 37 H 1.09004 * 110.47244 * 104.14003 * 21 19 18 38 38 H 1.09002 * 110.38900 * 198.98636 * 23 22 21 39 39 H 1.09000 * 110.38936 * 76.71707 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1474 -2.2863 3.6037 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5866 4.8165 12 6 2.0322 -0.7104 -1.2306 13 8 2.7295 -1.6965 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.1954 -0.9402 -3.6508 16 6 1.6857 -0.2187 -4.9000 17 1 0.6049 -0.0857 -4.8509 18 6 2.0820 -0.9973 -6.1799 19 6 2.0644 0.1127 -7.2551 20 1 1.1609 0.0971 -7.8648 21 6 3.3652 0.0293 -8.0830 22 8 3.7866 1.4066 -8.2291 23 6 3.5891 1.9853 -6.9191 24 6 2.2276 1.4278 -6.4417 25 1 1.4100 2.1274 -6.6155 26 8 2.3468 1.0637 -5.0563 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7087 1.1613 3.4844 31 1 1.1492 0.5389 -2.5436 32 1 1.8324 -1.9680 -3.6510 33 1 3.2853 -0.9398 -3.6507 34 1 1.3476 -1.7699 -6.4074 35 1 3.0795 -1.4256 -6.0804 36 1 4.1218 -0.5441 -7.5474 37 1 3.1688 -0.4172 -9.0578 38 1 3.5518 3.0727 -6.9860 39 1 4.3851 1.6743 -6.2426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831225730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:44 Heat of formation + Delta-G solvation = -155.452765 kcal Electronic energy + Delta-G solvation = -20833.938700 eV Core-core repulsion = 17547.349509 eV Total energy + Delta-G solvation = -3286.589190 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.63816 -40.47901 -38.37156 -35.81698 -35.59676 -33.56423 -32.66607 -31.15626 -29.22061 -27.22674 -26.69927 -24.24061 -23.66711 -22.40678 -21.51235 -20.95279 -18.41139 -18.26374 -17.85114 -17.29993 -16.84500 -16.71443 -16.44280 -16.24064 -15.79540 -15.63182 -14.82992 -14.57344 -14.23038 -14.10102 -13.84914 -13.46007 -13.35266 -12.99007 -12.96900 -12.67780 -12.58880 -12.32362 -12.20505 -12.11862 -12.02473 -11.88432 -11.70208 -11.02670 -10.99034 -10.69618 -10.59590 -10.30342 -9.98724 -8.14996 -6.25564 1.39652 1.41364 1.55168 1.92668 2.31047 2.47252 2.61380 2.94464 3.14396 3.35201 3.58119 3.77746 3.90550 4.04167 4.07570 4.17114 4.25743 4.32662 4.41588 4.55907 4.70895 4.73362 4.76290 4.79366 4.82073 4.91813 4.95837 4.98741 5.03438 5.10866 5.49422 5.50617 5.58005 5.75302 5.92876 5.94974 6.21732 6.72978 6.86126 7.39906 7.53686 8.91104 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043537 B = 0.003470 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.973384 B = 8066.324314 C = 8163.651203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.022 3.978 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.589 6.589 14 N -0.723 5.723 15 C 0.125 3.875 16 C 0.071 3.929 17 H 0.097 0.903 18 C -0.135 4.135 19 C -0.143 4.143 20 H 0.129 0.871 21 C 0.045 3.955 22 O -0.390 6.390 23 C 0.039 3.961 24 C 0.039 3.961 25 H 0.108 0.892 26 O -0.385 6.385 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.265 0.735 31 H 0.410 0.590 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 0.762 -22.630 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 H 0.056 0.944 4 C -0.567 4.567 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.198 1.198 12 C 0.310 3.690 13 O -0.469 6.469 14 N -0.376 5.376 15 C 0.002 3.998 16 C 0.014 3.986 17 H 0.115 0.885 18 C -0.173 4.173 19 C -0.162 4.162 20 H 0.147 0.853 21 C -0.031 4.031 22 O -0.309 6.309 23 C -0.038 4.038 24 C -0.019 4.019 25 H 0.126 0.874 26 O -0.306 6.306 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.150 0.398 -22.458 22.491 hybrid contribution 0.130 -0.112 1.148 1.161 sum -1.019 0.286 -21.310 21.336 Atomic orbital electron populations 1.21540 0.94834 0.99516 1.01703 1.18823 0.95560 0.95802 0.89748 0.94431 1.21329 1.31537 1.12709 0.91161 0.93345 1.25620 0.95198 0.95767 1.01486 1.69963 1.37269 1.23627 1.24250 0.85522 0.78371 0.78560 0.79306 1.20425 1.20013 1.19787 1.21534 0.78190 0.83674 0.85638 1.90501 1.39998 1.28806 1.87589 1.45957 1.54338 1.32539 1.04807 1.21396 0.99067 0.96294 0.83067 1.23643 0.97741 0.83119 0.94105 0.88521 1.23180 1.04311 0.98083 0.91768 1.23921 1.01051 0.93648 0.97530 0.85301 1.23811 0.93790 0.83518 1.02013 1.89277 1.87071 1.24611 1.29977 1.23702 0.95708 1.00076 0.84331 1.24435 0.98605 0.97400 0.81428 0.87415 1.89110 1.78093 1.37388 1.25976 0.95617 0.91139 0.92976 0.92600 0.75440 0.90023 0.93021 0.86895 0.89982 0.91792 0.86631 0.87376 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.87 71.98 0.64 -4.77 16 2 C 0.02 1.12 2.64 -12.29 -0.03 1.09 16 3 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.53 -31.24 8.37 25.60 0.21 -31.03 16 5 H 0.05 3.06 6.75 -2.91 -0.02 3.04 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -51.82 11.32 21.45 0.24 -51.57 16 8 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 9 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 C 0.52 24.46 7.15 87.66 0.63 25.09 16 13 O -0.59 -32.01 15.46 -3.04 -0.05 -32.06 16 14 N -0.72 -25.16 5.45 -463.06 -2.52 -27.68 16 15 C 0.13 3.53 5.42 86.38 0.47 4.00 16 16 C 0.07 1.40 3.36 31.27 0.11 1.50 16 17 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 18 C -0.14 -1.83 6.13 31.79 0.19 -1.64 16 19 C -0.14 -1.78 4.19 -8.93 -0.04 -1.82 16 20 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 21 C 0.04 0.62 7.14 72.46 0.52 1.14 16 22 O -0.39 -7.64 11.70 -148.98 -1.74 -9.39 16 23 C 0.04 0.72 7.31 72.55 0.53 1.25 16 24 C 0.04 0.67 4.59 32.02 0.15 0.82 16 25 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 26 O -0.39 -8.96 10.79 -148.98 -1.61 -10.57 16 27 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 29 H 0.05 1.91 7.56 -2.39 -0.02 1.90 16 30 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.41 12.40 7.89 -92.71 -0.73 11.66 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.21 7.10 -2.38 -0.02 1.19 16 36 H 0.06 0.92 7.20 -2.39 -0.02 0.91 16 37 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.26 8.00 -2.39 -0.02 1.24 16 Total: -1.00 -71.68 316.37 0.49 -71.20 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.32 Total: 15.49 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 3.82 Total: -2.89 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -2.28 Total: -79.25 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -3.40 Total: -52.01 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -71.68 0.49 -71.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831225730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.256 kcal (2) G-P(sol) polarization free energy of solvation -71.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds