Wall clock time and date at job start Mon Mar 30 2020 04:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47140 * 2 1 4 4 C 1.50698 * 109.46782 * 119.99997 * 2 1 3 5 5 H 1.07999 * 120.00016 * 119.99849 * 4 2 1 6 6 C 1.37878 * 120.00029 * 299.99287 * 4 2 1 7 7 N 1.31513 * 119.99941 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00013 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47047 * 90.00113 * 8 6 4 10 10 H 1.48493 * 109.47161 * 210.00275 * 8 6 4 11 11 H 1.48505 * 109.47082 * 330.00181 * 8 6 4 12 12 C 1.50702 * 109.46835 * 239.99523 * 2 1 3 13 13 O 1.21275 * 119.99953 * 240.00422 * 12 2 1 14 14 N 1.34779 * 119.99675 * 60.00613 * 12 2 1 15 15 C 1.46500 * 119.99677 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.46856 * 179.97438 * 15 14 12 17 17 H 1.08997 * 110.36049 * 57.67077 * 16 15 14 18 18 C 1.54947 * 110.40301 * 179.97438 * 16 15 14 19 19 C 1.55053 * 101.20274 * 156.83075 * 18 16 15 20 20 H 1.08989 * 113.23102 * 205.14792 * 19 18 16 21 21 C 1.53981 * 108.68216 * 77.64401 * 19 18 16 22 22 O 1.43857 * 107.07337 * 257.15990 * 21 19 18 23 23 C 1.44427 * 106.48210 * 330.16492 * 22 21 19 24 24 C 1.54911 * 103.56847 * 41.52853 * 23 22 21 25 25 H 1.08998 * 112.43897 * 202.60598 * 24 23 22 26 26 O 1.43144 * 108.85277 * 77.51789 * 24 23 22 27 27 H 1.09002 * 109.46598 * 300.00542 * 1 2 3 28 28 H 1.08998 * 109.46998 * 60.00021 * 1 2 3 29 29 H 1.08993 * 109.47377 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99657 * 179.97438 * 7 6 4 31 31 H 0.97003 * 120.00369 * 359.97438 * 14 12 2 32 32 H 1.08996 * 109.47674 * 59.99529 * 15 14 12 33 33 H 1.09006 * 109.46840 * 299.99488 * 15 14 12 34 34 H 1.09000 * 111.07895 * 274.81975 * 18 16 15 35 35 H 1.09000 * 111.07459 * 38.84997 * 18 16 15 36 36 H 1.09000 * 109.91591 * 137.80168 * 21 19 18 37 37 H 1.09007 * 109.91720 * 16.51270 * 21 19 18 38 38 H 1.08999 * 110.60188 * 283.00930 * 23 22 21 39 39 H 1.08994 * 110.73488 * 160.11689 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9429 0.8298 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9488 5.1122 11 1 2.4878 -2.5653 3.7123 12 6 2.0323 -0.7105 -1.2304 13 8 2.7294 -1.6966 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.1945 -0.9411 -3.6507 16 6 1.6841 -0.2201 -4.9000 17 1 2.0053 0.8215 -4.8945 18 6 2.1886 -0.9336 -6.1795 19 6 1.1311 -0.4754 -7.2167 20 1 1.0217 -1.1659 -8.0529 21 6 1.4510 0.9696 -7.6418 22 8 0.5241 1.8275 -6.9529 23 6 -0.6812 1.0560 -6.7582 24 6 -0.1554 -0.3430 -6.3507 25 1 -0.8813 -1.1328 -6.5438 26 8 0.2515 -0.3028 -4.9789 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.7083 1.1610 3.4844 31 1 1.1488 0.5385 -2.5436 32 1 1.8308 -1.9685 -3.6505 33 1 3.2846 -0.9415 -3.6509 34 1 3.1844 -0.5865 -6.4552 35 1 2.1732 -2.0165 -6.0563 36 1 1.3251 1.0762 -8.7192 37 1 2.4725 1.2227 -7.3577 38 1 -1.2522 0.9962 -7.6847 39 1 -1.2891 1.4844 -5.9613 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831225733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:47 Heat of formation + Delta-G solvation = -130.301360 kcal Electronic energy + Delta-G solvation = -21086.335203 eV Core-core repulsion = 17800.836659 eV Total energy + Delta-G solvation = -3285.498544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10607 -38.68123 -37.16789 -34.10615 -33.63084 -32.84204 -30.92754 -29.99836 -28.33014 -25.68186 -25.03619 -23.14203 -22.14546 -21.26131 -20.95068 -19.18777 -17.65269 -16.60088 -16.27184 -15.91452 -15.86342 -15.59899 -14.95820 -14.69524 -14.29841 -14.06273 -14.00442 -13.39122 -12.76781 -12.66607 -12.43252 -12.05092 -11.87392 -11.81755 -11.45944 -11.41930 -11.26712 -11.22442 -10.93848 -10.64253 -10.61375 -10.23566 -10.14954 -9.89554 -9.48349 -8.89173 -8.53544 -8.34046 -8.24644 -5.96153 -3.98987 3.34731 3.38218 3.43507 3.50935 3.62372 3.83866 3.91783 3.98156 4.34948 4.48574 4.53815 4.61402 4.76553 4.90792 5.00275 5.11893 5.17188 5.32967 5.36874 5.38741 5.41266 5.52866 5.54680 5.65244 5.84746 6.05004 6.38925 6.50588 6.73979 6.82408 6.94753 7.03255 7.18668 7.57414 7.84738 8.07132 8.24598 8.55232 9.09955 9.34018 9.66197 11.11502 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041344 B = 0.003797 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.079822 B = 7373.182299 C = 7745.122813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.551 6.551 14 N -0.742 5.742 15 C 0.126 3.874 16 C 0.071 3.929 17 H 0.081 0.919 18 C -0.142 4.142 19 C -0.157 4.157 20 H 0.110 0.890 21 C 0.049 3.951 22 O -0.370 6.370 23 C 0.027 3.973 24 C 0.051 3.949 25 H 0.111 0.889 26 O -0.356 6.356 27 H 0.092 0.908 28 H 0.013 0.987 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.399 0.601 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 0.314 -22.570 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.427 6.427 14 N -0.396 5.396 15 C 0.001 3.999 16 C 0.014 3.986 17 H 0.099 0.901 18 C -0.180 4.180 19 C -0.176 4.176 20 H 0.128 0.872 21 C -0.028 4.028 22 O -0.289 6.289 23 C -0.049 4.049 24 C -0.007 4.007 25 H 0.129 0.871 26 O -0.275 6.275 27 H 0.110 0.890 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.234 0.766 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.692 -0.084 -22.081 22.146 hybrid contribution 0.083 -0.246 0.377 0.457 sum -1.610 -0.330 -21.705 21.767 Atomic orbital electron populations 1.21721 0.96480 0.99775 1.00928 1.18867 0.94218 0.96798 0.89356 0.93055 1.21159 1.30805 1.12742 0.89053 0.90834 1.24954 0.95172 0.95109 0.99075 1.69881 1.37173 1.23195 1.23423 0.86459 0.78403 0.80254 0.82127 1.20717 1.21335 1.19782 1.21967 0.78371 0.84236 0.84510 1.90514 1.38318 1.27024 1.86861 1.46186 1.55396 1.32771 1.05243 1.21285 0.98628 0.96608 0.83362 1.23340 0.81003 0.99617 0.94654 0.90109 1.23300 0.99005 1.01982 0.93679 1.24016 0.95797 0.98390 0.99370 0.87225 1.23271 0.94867 0.87993 0.96655 1.89004 1.24826 1.36780 1.78264 1.24090 0.88399 0.91298 1.01146 1.24232 0.96141 0.97656 0.82719 0.87143 1.88525 1.21203 1.94707 1.23062 0.88957 0.96761 0.95091 0.93037 0.76647 0.91615 0.90906 0.89279 0.89594 0.92168 0.89180 0.91449 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.87 37.16 0.33 -2.83 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -14.60 8.37 -34.44 -0.29 -14.89 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.81 11.32 55.43 0.63 -25.19 16 8 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 12 C 0.52 12.41 7.15 -10.98 -0.08 12.33 16 13 O -0.55 -14.88 15.46 5.56 0.09 -14.79 16 14 N -0.74 -13.85 5.41 -60.29 -0.33 -14.18 16 15 C 0.13 1.93 5.41 -4.04 -0.02 1.91 16 16 C 0.07 0.86 2.95 -25.70 -0.08 0.78 16 17 H 0.08 0.99 8.03 -51.93 -0.42 0.58 16 18 C -0.14 -1.21 5.90 -24.62 -0.15 -1.36 16 19 C -0.16 -1.17 4.32 -87.61 -0.38 -1.55 16 20 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 21 C 0.05 0.39 6.79 37.67 0.26 0.65 16 22 O -0.37 -4.11 11.38 -36.19 -0.41 -4.52 16 23 C 0.03 0.25 7.33 38.17 0.28 0.53 16 24 C 0.05 0.48 4.72 -24.31 -0.11 0.36 16 25 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 26 O -0.36 -4.65 10.64 -36.19 -0.39 -5.03 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 28 H 0.01 0.28 7.56 -51.93 -0.39 -0.11 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 31 H 0.40 6.87 7.89 -40.82 -0.32 6.55 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 0.63 7.70 -51.93 -0.40 0.23 16 35 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.68 7.41 -51.93 -0.38 0.29 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -33.53 315.89 -7.19 -40.73 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.94 Total: 3.00 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.58 Total: -2.04 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.30 Total: -39.37 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.71 Total: -24.35 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.53 -7.19 -40.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831225733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.575 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds