Wall clock time and date at job start Mon Mar 30 2020 04:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47140 * 2 1 4 4 C 1.50698 * 109.46782 * 119.99997 * 2 1 3 5 5 H 1.07999 * 120.00016 * 119.99849 * 4 2 1 6 6 C 1.37878 * 120.00029 * 299.99287 * 4 2 1 7 7 N 1.31513 * 119.99941 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00013 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47047 * 90.00113 * 8 6 4 10 10 H 1.48493 * 109.47161 * 210.00275 * 8 6 4 11 11 H 1.48505 * 109.47082 * 330.00181 * 8 6 4 12 12 C 1.50702 * 109.46835 * 239.99523 * 2 1 3 13 13 O 1.21275 * 119.99953 * 240.00422 * 12 2 1 14 14 N 1.34779 * 119.99675 * 60.00613 * 12 2 1 15 15 C 1.46500 * 119.99677 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.46856 * 179.97438 * 15 14 12 17 17 H 1.08997 * 110.36049 * 57.67077 * 16 15 14 18 18 C 1.54947 * 110.40301 * 179.97438 * 16 15 14 19 19 C 1.55053 * 101.20274 * 156.83075 * 18 16 15 20 20 H 1.08989 * 113.23102 * 205.14792 * 19 18 16 21 21 C 1.53981 * 108.68216 * 77.64401 * 19 18 16 22 22 O 1.43857 * 107.07337 * 257.15990 * 21 19 18 23 23 C 1.44427 * 106.48210 * 330.16492 * 22 21 19 24 24 C 1.54911 * 103.56847 * 41.52853 * 23 22 21 25 25 H 1.08998 * 112.43897 * 202.60598 * 24 23 22 26 26 O 1.43144 * 108.85277 * 77.51789 * 24 23 22 27 27 H 1.09002 * 109.46598 * 300.00542 * 1 2 3 28 28 H 1.08998 * 109.46998 * 60.00021 * 1 2 3 29 29 H 1.08993 * 109.47377 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99657 * 179.97438 * 7 6 4 31 31 H 0.97003 * 120.00369 * 359.97438 * 14 12 2 32 32 H 1.08996 * 109.47674 * 59.99529 * 15 14 12 33 33 H 1.09006 * 109.46840 * 299.99488 * 15 14 12 34 34 H 1.09000 * 111.07895 * 274.81975 * 18 16 15 35 35 H 1.09000 * 111.07459 * 38.84997 * 18 16 15 36 36 H 1.09000 * 109.91591 * 137.80168 * 21 19 18 37 37 H 1.09007 * 109.91720 * 16.51270 * 21 19 18 38 38 H 1.08999 * 110.60188 * 283.00930 * 23 22 21 39 39 H 1.08994 * 110.73488 * 160.11689 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9429 0.8298 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9488 5.1122 11 1 2.4878 -2.5653 3.7123 12 6 2.0323 -0.7105 -1.2304 13 8 2.7294 -1.6966 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.1945 -0.9411 -3.6507 16 6 1.6841 -0.2201 -4.9000 17 1 2.0053 0.8215 -4.8945 18 6 2.1886 -0.9336 -6.1795 19 6 1.1311 -0.4754 -7.2167 20 1 1.0217 -1.1659 -8.0529 21 6 1.4510 0.9696 -7.6418 22 8 0.5241 1.8275 -6.9529 23 6 -0.6812 1.0560 -6.7582 24 6 -0.1554 -0.3430 -6.3507 25 1 -0.8813 -1.1328 -6.5438 26 8 0.2515 -0.3028 -4.9789 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.7083 1.1610 3.4844 31 1 1.1488 0.5385 -2.5436 32 1 1.8308 -1.9685 -3.6505 33 1 3.2846 -0.9415 -3.6509 34 1 3.1844 -0.5865 -6.4552 35 1 2.1732 -2.0165 -6.0563 36 1 1.3251 1.0762 -8.7192 37 1 2.4725 1.2227 -7.3577 38 1 -1.2522 0.9962 -7.6847 39 1 -1.2891 1.4844 -5.9613 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831225733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:46 Heat of formation + Delta-G solvation = -155.286514 kcal Electronic energy + Delta-G solvation = -21087.418641 eV Core-core repulsion = 17800.836659 eV Total energy + Delta-G solvation = -3286.581981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86897 -40.47718 -38.06777 -35.80947 -35.55873 -33.62831 -32.67663 -31.27382 -29.19650 -27.22523 -26.68164 -24.37502 -23.56355 -22.14612 -21.72637 -20.95629 -18.55538 -18.29846 -17.82707 -17.16212 -16.94253 -16.56420 -16.45170 -16.21520 -15.73229 -15.36673 -14.80442 -14.70191 -14.53368 -14.08078 -13.79837 -13.36378 -13.05397 -12.96820 -12.72541 -12.67254 -12.59346 -12.47016 -12.29180 -12.19434 -12.01280 -11.98670 -11.88082 -11.04389 -10.95780 -10.60530 -10.31824 -10.26894 -9.97734 -8.14469 -6.25431 1.41308 1.41651 1.54119 1.92084 2.31652 2.48222 2.70287 2.99473 3.14777 3.22937 3.64754 3.77713 3.97116 3.97991 4.10517 4.16175 4.35303 4.38907 4.55525 4.60955 4.63704 4.73942 4.78420 4.80394 4.85120 4.89668 4.95340 4.99377 5.02401 5.11933 5.48781 5.56743 5.74328 5.87026 5.93091 6.02917 6.20658 6.72311 6.85789 7.39712 7.53113 8.91646 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041344 B = 0.003797 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.079822 B = 7373.182299 C = 7745.122813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.049 0.951 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.278 1.278 12 C 0.520 3.480 13 O -0.588 6.588 14 N -0.723 5.723 15 C 0.124 3.876 16 C 0.076 3.924 17 H 0.077 0.923 18 C -0.137 4.137 19 C -0.143 4.143 20 H 0.140 0.860 21 C 0.043 3.957 22 O -0.401 6.401 23 C 0.026 3.974 24 C 0.040 3.960 25 H 0.128 0.872 26 O -0.385 6.385 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.021 0.979 30 H 0.265 0.735 31 H 0.408 0.592 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 0.138 -24.333 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.001 3.999 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.310 3.690 13 O -0.469 6.469 14 N -0.376 5.376 15 C 0.000 4.000 16 C 0.019 3.981 17 H 0.095 0.905 18 C -0.175 4.175 19 C -0.161 4.161 20 H 0.158 0.842 21 C -0.033 4.033 22 O -0.321 6.321 23 C -0.050 4.050 24 C -0.017 4.017 25 H 0.146 0.854 26 O -0.305 6.305 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.243 0.757 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.874 -0.225 -23.891 23.965 hybrid contribution 0.098 -0.146 0.865 0.883 sum -1.776 -0.371 -23.025 23.096 Atomic orbital electron populations 1.21526 0.95195 0.99268 1.01483 1.18816 0.95256 0.95952 0.89831 0.94207 1.21290 1.31651 1.12764 0.91091 0.93249 1.25641 0.95152 0.95770 1.01533 1.69962 1.37177 1.23687 1.24331 0.85549 0.78398 0.78748 0.78910 1.19884 1.19880 1.20304 1.21535 0.78212 0.83705 0.85597 1.90488 1.40172 1.28617 1.87576 1.45965 1.54181 1.32532 1.04899 1.21501 0.98974 0.96251 0.83273 1.23232 0.81190 0.99288 0.94404 0.90505 1.23323 1.00291 1.01898 0.91977 1.24044 0.93899 0.98664 0.99494 0.84182 1.23466 0.94463 0.87823 0.97586 1.88969 1.25910 1.38236 1.78943 1.24162 0.88098 0.90849 1.01933 1.24526 0.97508 0.98324 0.81386 0.85442 1.88485 1.21485 1.94837 1.25722 0.90997 0.93477 0.95969 0.92579 0.75650 0.92564 0.90499 0.87412 0.89177 0.90165 0.88951 0.88925 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.87 71.98 0.64 -5.03 16 2 C 0.02 1.20 2.64 -12.29 -0.03 1.16 16 3 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.53 -31.74 8.37 25.60 0.21 -31.53 16 5 H 0.05 3.15 6.75 -2.91 -0.02 3.13 16 6 C 0.02 1.04 5.30 84.66 0.45 1.48 16 7 N -0.91 -52.64 11.32 21.45 0.24 -52.39 16 8 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 9 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 12 C 0.52 25.29 7.15 87.66 0.63 25.92 16 13 O -0.59 -32.60 15.46 -3.01 -0.05 -32.64 16 14 N -0.72 -26.94 5.41 -463.05 -2.51 -29.45 16 15 C 0.12 3.73 5.41 86.38 0.47 4.19 16 16 C 0.08 1.73 2.95 31.26 0.09 1.82 16 17 H 0.08 1.81 8.03 -2.39 -0.02 1.79 16 18 C -0.14 -1.98 5.90 31.96 0.19 -1.79 16 19 C -0.14 -1.66 4.32 -8.85 -0.04 -1.69 16 20 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 21 C 0.04 0.57 6.79 72.31 0.49 1.06 16 22 O -0.40 -8.25 11.38 -148.06 -1.68 -9.93 16 23 C 0.03 0.43 7.33 72.64 0.53 0.96 16 24 C 0.04 0.66 4.72 32.16 0.15 0.81 16 25 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 26 O -0.39 -9.57 10.64 -148.06 -1.58 -11.15 16 27 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 28 H 0.05 1.91 7.56 -2.39 -0.02 1.90 16 29 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.41 13.84 7.89 -92.71 -0.73 13.11 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.11 1.18 7.70 -2.39 -0.02 1.16 16 35 H 0.09 1.27 8.07 -2.39 -0.02 1.25 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 1.15 7.41 -2.38 -0.02 1.13 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -73.29 315.89 0.55 -72.73 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.32 Total: 17.53 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 3.78 Total: -2.63 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -2.26 Total: -81.84 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -3.31 Total: -53.72 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.29 0.55 -72.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831225733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.553 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds