Wall clock time and date at job start Mon Mar 30 2020 04:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47245 * 2 1 4 4 C 1.50700 * 109.47316 * 239.99874 * 2 1 3 5 5 H 1.07998 * 119.99829 * 240.00020 * 4 2 1 6 6 C 1.37878 * 119.99760 * 60.00201 * 4 2 1 7 7 N 1.31507 * 120.00181 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99537 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47088 * 60.00036 * 8 6 4 10 10 H 1.48500 * 109.46898 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47392 * 299.99791 * 8 6 4 12 12 C 1.50698 * 109.46889 * 119.99756 * 2 1 3 13 13 O 1.21286 * 120.00087 * 120.00268 * 12 2 1 14 14 N 1.34771 * 120.00137 * 300.00009 * 12 2 1 15 15 C 1.46500 * 120.00178 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.47558 * 180.02562 * 15 14 12 17 17 H 1.09008 * 110.55116 * 307.88926 * 16 15 14 18 18 C 1.54955 * 110.62232 * 185.00115 * 16 15 14 19 19 C 1.54555 * 102.16845 * 203.92370 * 18 16 15 20 20 H 1.09002 * 112.85143 * 258.78355 * 19 18 16 21 21 C 1.54420 * 109.56772 * 132.10584 * 19 18 16 22 22 O 1.44769 * 104.35790 * 222.79510 * 21 19 18 23 23 C 1.44572 * 104.45229 * 43.15074 * 22 21 19 24 24 C 1.54676 * 104.81254 * 317.85331 * 23 22 21 25 25 H 1.09000 * 112.31548 * 262.42737 * 24 23 22 26 26 O 1.43735 * 108.41026 * 137.83120 * 24 23 22 27 27 H 1.08997 * 109.47114 * 300.00280 * 1 2 3 28 28 H 1.08998 * 109.46702 * 60.00391 * 1 2 3 29 29 H 1.08996 * 109.46721 * 179.97438 * 1 2 3 30 30 H 0.97008 * 119.99990 * 180.02562 * 7 6 4 31 31 H 0.97003 * 120.00601 * 0.02562 * 14 12 2 32 32 H 1.09006 * 109.47031 * 60.00478 * 15 14 12 33 33 H 1.09002 * 109.47513 * 300.00350 * 15 14 12 34 34 H 1.09006 * 110.86599 * 85.75587 * 18 16 15 35 35 H 1.08997 * 110.86707 * 322.09133 * 18 16 15 36 36 H 1.09001 * 110.47155 * 341.42273 * 21 19 18 37 37 H 1.09004 * 110.47244 * 103.89708 * 21 19 18 38 38 H 1.09002 * 110.38900 * 198.98636 * 23 22 21 39 39 H 1.09000 * 110.38936 * 76.71707 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3227 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8272 -0.4200 -5.2204 11 1 3.8077 -1.1190 -4.0076 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4545 15 6 2.1954 -0.9401 3.6507 16 6 1.6848 -0.2193 4.9000 17 1 1.9187 0.8443 4.8506 18 6 2.2876 -0.8518 6.1798 19 6 1.2468 -0.4658 7.2552 20 1 1.5621 0.3811 7.8646 21 6 0.8870 -1.7096 8.0967 22 8 -0.5512 -1.6385 8.2456 23 6 -1.0322 -1.2701 6.9330 24 6 -0.0479 -0.1826 6.4420 25 1 -0.4290 0.8253 6.6065 26 8 0.2510 -0.4320 5.0584 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 0.7083 1.1608 -3.4845 31 1 1.1487 0.5386 2.5436 32 1 3.2855 -0.9396 3.6507 33 1 1.8326 -1.9680 3.6510 34 1 3.2605 -0.4160 6.4070 35 1 2.3598 -1.9348 6.0805 36 1 1.1693 -2.6211 7.5697 37 1 1.3760 -1.6660 9.0699 38 1 -2.0425 -0.8664 6.9982 39 1 -1.0105 -2.1313 6.2651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831225735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:49 Heat of formation + Delta-G solvation = -130.977915 kcal Electronic energy + Delta-G solvation = -20861.317203 eV Core-core repulsion = 17575.789322 eV Total energy + Delta-G solvation = -3285.527881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83545 -38.75861 -37.45398 -34.18720 -33.67460 -32.76392 -30.90285 -29.91080 -28.38551 -25.69000 -25.07125 -23.08433 -22.34338 -21.36501 -20.74458 -19.23897 -17.53647 -16.68910 -16.26408 -16.04723 -15.82095 -15.65719 -15.18956 -14.82090 -14.39076 -14.14554 -13.43831 -13.42250 -12.95356 -12.75437 -12.66706 -12.22029 -12.12781 -11.60069 -11.49213 -11.34628 -11.18685 -11.00380 -10.95286 -10.68477 -10.64257 -10.25314 -10.20233 -9.92556 -9.89254 -8.94071 -8.58075 -8.41661 -8.28313 -5.99372 -4.02441 3.28594 3.38686 3.40860 3.46428 3.59126 3.78333 3.88600 4.12050 4.30598 4.39736 4.50694 4.68409 4.77733 4.83537 4.89377 5.04624 5.15079 5.30037 5.33678 5.36743 5.45646 5.52884 5.56710 5.67353 5.76533 5.92578 6.23624 6.33069 6.66984 6.69098 6.89827 6.98476 7.10365 7.52733 7.80760 8.02954 8.19556 8.49358 9.06144 9.28156 9.62859 11.08219 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045038 B = 0.003525 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.547863 B = 7941.800314 C = 8196.972072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.549 6.549 14 N -0.744 5.744 15 C 0.127 3.873 16 C 0.066 3.934 17 H 0.082 0.918 18 C -0.140 4.140 19 C -0.153 4.153 20 H 0.104 0.896 21 C 0.051 3.949 22 O -0.373 6.373 23 C 0.041 3.959 24 C 0.044 3.956 25 H 0.093 0.907 26 O -0.358 6.358 27 H 0.013 0.987 28 H 0.092 0.908 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.398 0.602 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 0.617 21.141 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.425 6.425 14 N -0.398 5.398 15 C 0.003 3.997 16 C 0.009 3.991 17 H 0.100 0.900 18 C -0.179 4.179 19 C -0.172 4.172 20 H 0.122 0.878 21 C -0.026 4.026 22 O -0.292 6.292 23 C -0.035 4.035 24 C -0.014 4.014 25 H 0.111 0.889 26 O -0.277 6.277 27 H 0.032 0.968 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.232 0.768 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.832 -0.120 20.923 20.940 hybrid contribution 0.251 0.146 -0.737 0.792 sum -0.581 0.026 20.186 20.194 Atomic orbital electron populations 1.21728 0.96473 0.99830 1.00910 1.18863 0.94203 0.96780 0.89321 0.93056 1.21117 1.30966 1.12797 0.89055 0.90866 1.24950 0.95144 0.95081 0.99087 1.69866 1.37104 1.23136 1.23576 0.86508 0.79246 0.79731 0.81646 1.20210 1.21403 1.20216 1.21980 0.78364 0.84248 0.84467 1.90524 1.38211 1.26947 1.86827 1.46218 1.55484 1.32791 1.05336 1.21205 0.98711 0.96828 0.82969 1.23766 0.80771 0.99635 0.94951 0.90043 1.23138 0.98850 1.02557 0.93310 1.23890 0.95748 0.99790 0.97801 0.87791 1.23611 0.82028 0.96364 1.00601 1.89293 1.19778 1.90621 1.29481 1.23682 0.98141 0.97189 0.84535 1.24234 0.95094 0.99455 0.82652 0.88903 1.89294 1.23580 1.90535 1.24305 0.96819 0.88923 0.95044 0.92948 0.76785 0.90666 0.91322 0.89378 0.89528 0.91449 0.88742 0.88325 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.87 37.16 0.33 -2.78 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.46 8.37 -34.44 -0.29 -14.75 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.52 12.09 7.15 -10.99 -0.08 12.01 16 13 O -0.55 -14.55 15.46 5.55 0.09 -14.46 16 14 N -0.74 -13.22 5.45 -60.29 -0.33 -13.55 16 15 C 0.13 1.85 5.41 -4.04 -0.02 1.83 16 16 C 0.07 0.72 3.39 -25.70 -0.09 0.63 16 17 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 18 C -0.14 -1.15 6.14 -24.88 -0.15 -1.30 16 19 C -0.15 -1.20 4.15 -87.74 -0.36 -1.56 16 20 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 21 C 0.05 0.41 7.16 37.90 0.27 0.68 16 22 O -0.37 -3.93 11.70 -35.23 -0.41 -4.35 16 23 C 0.04 0.41 7.31 38.04 0.28 0.68 16 24 C 0.04 0.42 4.58 -24.53 -0.11 0.31 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 O -0.36 -4.44 10.83 -35.23 -0.38 -4.82 16 27 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.40 6.34 7.89 -40.82 -0.32 6.02 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.72 7.16 -51.93 -0.37 0.35 16 36 H 0.07 0.54 7.25 -51.93 -0.38 0.16 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.80 8.00 -51.93 -0.42 0.38 16 LS Contribution 316.50 15.07 4.77 4.77 Total: -1.00 -32.75 316.50 -7.14 -39.89 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.91 Total: 2.53 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.57 Total: -2.20 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.30 Total: -38.42 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.71 Total: -23.63 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.75 -7.14 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831225735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.087 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds