Wall clock time and date at job start Mon Mar 30 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47245 * 2 1 4 4 C 1.50700 * 109.47316 * 239.99874 * 2 1 3 5 5 H 1.07998 * 119.99829 * 240.00020 * 4 2 1 6 6 C 1.37878 * 119.99760 * 60.00201 * 4 2 1 7 7 N 1.31507 * 120.00181 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99537 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47088 * 60.00036 * 8 6 4 10 10 H 1.48500 * 109.46898 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47392 * 299.99791 * 8 6 4 12 12 C 1.50698 * 109.46889 * 119.99756 * 2 1 3 13 13 O 1.21286 * 120.00087 * 120.00268 * 12 2 1 14 14 N 1.34771 * 120.00137 * 300.00009 * 12 2 1 15 15 C 1.46500 * 120.00178 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.47558 * 180.02562 * 15 14 12 17 17 H 1.09008 * 110.55116 * 307.88926 * 16 15 14 18 18 C 1.54955 * 110.62232 * 185.00115 * 16 15 14 19 19 C 1.54555 * 102.16845 * 203.92370 * 18 16 15 20 20 H 1.09002 * 112.85143 * 258.78355 * 19 18 16 21 21 C 1.54420 * 109.56772 * 132.10584 * 19 18 16 22 22 O 1.44769 * 104.35790 * 222.79510 * 21 19 18 23 23 C 1.44572 * 104.45229 * 43.15074 * 22 21 19 24 24 C 1.54676 * 104.81254 * 317.85331 * 23 22 21 25 25 H 1.09000 * 112.31548 * 262.42737 * 24 23 22 26 26 O 1.43735 * 108.41026 * 137.83120 * 24 23 22 27 27 H 1.08997 * 109.47114 * 300.00280 * 1 2 3 28 28 H 1.08998 * 109.46702 * 60.00391 * 1 2 3 29 29 H 1.08996 * 109.46721 * 179.97438 * 1 2 3 30 30 H 0.97008 * 119.99990 * 180.02562 * 7 6 4 31 31 H 0.97003 * 120.00601 * 0.02562 * 14 12 2 32 32 H 1.09006 * 109.47031 * 60.00478 * 15 14 12 33 33 H 1.09002 * 109.47513 * 300.00350 * 15 14 12 34 34 H 1.09006 * 110.86599 * 85.75587 * 18 16 15 35 35 H 1.08997 * 110.86707 * 322.09133 * 18 16 15 36 36 H 1.09001 * 110.47155 * 341.42273 * 21 19 18 37 37 H 1.09004 * 110.47244 * 103.89708 * 21 19 18 38 38 H 1.09002 * 110.38900 * 198.98636 * 23 22 21 39 39 H 1.09000 * 110.38936 * 76.71707 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3227 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8272 -0.4200 -5.2204 11 1 3.8077 -1.1190 -4.0076 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4545 15 6 2.1954 -0.9401 3.6507 16 6 1.6848 -0.2193 4.9000 17 1 1.9187 0.8443 4.8506 18 6 2.2876 -0.8518 6.1798 19 6 1.2468 -0.4658 7.2552 20 1 1.5621 0.3811 7.8646 21 6 0.8870 -1.7096 8.0967 22 8 -0.5512 -1.6385 8.2456 23 6 -1.0322 -1.2701 6.9330 24 6 -0.0479 -0.1826 6.4420 25 1 -0.4290 0.8253 6.6065 26 8 0.2510 -0.4320 5.0584 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 0.7083 1.1608 -3.4845 31 1 1.1487 0.5386 2.5436 32 1 3.2855 -0.9396 3.6507 33 1 1.8326 -1.9680 3.6510 34 1 3.2605 -0.4160 6.4070 35 1 2.3598 -1.9348 6.0805 36 1 1.1693 -2.6211 7.5697 37 1 1.3760 -1.6660 9.0699 38 1 -2.0425 -0.8664 6.9982 39 1 -1.0105 -2.1313 6.2651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831225735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:48 Heat of formation + Delta-G solvation = -155.266448 kcal Electronic energy + Delta-G solvation = -20862.370433 eV Core-core repulsion = 17575.789322 eV Total energy + Delta-G solvation = -3286.581111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60439 -40.47698 -38.34564 -35.81678 -35.59362 -33.54718 -32.66362 -31.14531 -29.21710 -27.22628 -26.71303 -24.24126 -23.65768 -22.38753 -21.49838 -20.95116 -18.38943 -18.25344 -17.87205 -17.26822 -16.84598 -16.72799 -16.45051 -16.23637 -15.81036 -15.56821 -14.84164 -14.56635 -14.28951 -14.06469 -13.78505 -13.51781 -13.31454 -12.98532 -12.96384 -12.71358 -12.59368 -12.31267 -12.20829 -12.13300 -12.00224 -11.87155 -11.70250 -11.04847 -10.99162 -10.70701 -10.59565 -10.30185 -9.98565 -8.14582 -6.25280 1.41457 1.43300 1.51777 1.92449 2.31338 2.47327 2.61883 2.94343 3.14844 3.35357 3.58441 3.77432 3.91267 4.04427 4.07376 4.17415 4.25933 4.33153 4.41114 4.55732 4.70792 4.73526 4.74944 4.79605 4.82339 4.91894 4.95461 4.99491 5.02617 5.10312 5.49187 5.49445 5.57950 5.74858 5.91247 5.93744 6.21312 6.72846 6.85941 7.39929 7.53751 8.91157 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045038 B = 0.003525 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.547863 B = 7941.800314 C = 8196.972072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.043 0.957 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.520 3.480 13 O -0.589 6.589 14 N -0.723 5.723 15 C 0.125 3.875 16 C 0.070 3.930 17 H 0.099 0.901 18 C -0.134 4.134 19 C -0.143 4.143 20 H 0.128 0.872 21 C 0.045 3.955 22 O -0.390 6.390 23 C 0.039 3.961 24 C 0.039 3.961 25 H 0.107 0.893 26 O -0.385 6.385 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.019 0.981 30 H 0.265 0.735 31 H 0.410 0.590 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 1.480 22.592 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.061 0.939 4 C -0.570 4.570 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.309 3.691 13 O -0.469 6.469 14 N -0.376 5.376 15 C 0.002 3.998 16 C 0.013 3.987 17 H 0.117 0.883 18 C -0.172 4.172 19 C -0.162 4.162 20 H 0.146 0.854 21 C -0.031 4.031 22 O -0.309 6.309 23 C -0.038 4.038 24 C -0.019 4.019 25 H 0.125 0.875 26 O -0.305 6.305 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.625 0.777 22.418 22.440 hybrid contribution 0.151 -0.115 -1.131 1.147 sum -0.474 0.662 21.287 21.303 Atomic orbital electron populations 1.21538 0.95231 0.99210 1.01595 1.18809 0.95188 0.96054 0.89724 0.93912 1.21274 1.31718 1.12803 0.91171 0.93304 1.25612 0.95172 0.95752 1.01460 1.69943 1.37127 1.23605 1.24387 0.85638 0.78734 0.78672 0.78753 1.20255 1.19887 1.20017 1.21536 0.78193 0.83683 0.85641 1.90499 1.40167 1.28624 1.87590 1.45958 1.54269 1.32609 1.04811 1.21395 0.99179 0.96198 0.83072 1.23769 0.80589 1.00224 0.94077 0.88299 1.23141 1.00004 1.02321 0.91767 1.23910 0.94473 1.00338 0.97440 0.85427 1.23794 0.80970 0.96467 1.01896 1.89277 1.21254 1.90736 1.29666 1.23693 0.99001 0.96880 0.84200 1.24418 0.96020 0.99912 0.81591 0.87500 1.89265 1.24248 1.90886 1.26125 0.93217 0.91026 0.96168 0.92568 0.75439 0.90029 0.93007 0.86898 0.90006 0.91836 0.86632 0.87380 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.87 71.98 0.64 -4.92 16 2 C 0.02 1.20 2.64 -12.29 -0.03 1.17 16 3 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.53 -31.33 8.37 25.60 0.21 -31.12 16 5 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -51.78 11.32 21.45 0.24 -51.53 16 8 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.52 24.41 7.15 87.66 0.63 25.04 16 13 O -0.59 -31.93 15.46 -3.05 -0.05 -31.97 16 14 N -0.72 -25.11 5.45 -463.05 -2.52 -27.63 16 15 C 0.13 3.51 5.41 86.38 0.47 3.98 16 16 C 0.07 1.38 3.39 31.26 0.11 1.48 16 17 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 18 C -0.13 -1.82 6.14 31.79 0.20 -1.62 16 19 C -0.14 -1.79 4.15 -8.93 -0.04 -1.82 16 20 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 21 C 0.04 0.62 7.16 72.46 0.52 1.14 16 22 O -0.39 -7.65 11.70 -148.98 -1.74 -9.39 16 23 C 0.04 0.73 7.31 72.55 0.53 1.26 16 24 C 0.04 0.66 4.58 32.02 0.15 0.80 16 25 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 26 O -0.38 -8.93 10.83 -148.98 -1.61 -10.54 16 27 H 0.05 1.92 7.56 -2.39 -0.02 1.91 16 28 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 31 H 0.41 12.36 7.89 -92.71 -0.73 11.63 16 32 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 1.21 7.16 -2.39 -0.02 1.19 16 36 H 0.06 0.92 7.25 -2.39 -0.02 0.90 16 37 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.26 8.00 -2.39 -0.02 1.24 16 Total: -1.00 -71.36 316.50 0.48 -70.88 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.32 Total: 15.84 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 3.82 Total: -3.07 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -2.28 Total: -79.16 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -3.40 Total: -51.90 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.36 0.48 -70.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831225735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.391 kcal (2) G-P(sol) polarization free energy of solvation -71.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds