Wall clock time and date at job start Mon Mar 30 2020 05:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99790 * 2 1 4 4 C 1.50696 * 115.54650 * 65.81563 * 3 2 1 5 5 O 1.20828 * 119.99698 * 188.82365 * 4 3 2 6 6 O 1.34233 * 120.00270 * 8.55025 * 4 3 2 7 7 C 1.45197 * 116.99909 * 180.27576 * 6 4 3 8 8 C 1.53038 * 109.45932 * 270.06070 * 7 6 4 9 9 C 1.53195 * 109.31376 * 178.61527 * 8 7 6 10 10 N 1.46923 * 108.77194 * 54.63866 * 9 8 7 11 11 C 1.36942 * 120.63093 * 126.37160 * 10 9 8 12 12 H 1.07997 * 119.99826 * 328.60447 * 11 10 9 13 13 C 1.38810 * 120.00255 * 148.60383 * 11 10 9 14 14 N 1.31619 * 119.99691 * 343.75616 * 13 11 10 15 15 Si 1.86792 * 120.00154 * 163.75180 * 13 11 10 16 16 H 1.48498 * 109.47133 * 90.00061 * 15 13 11 17 17 H 1.48501 * 109.47278 * 210.00210 * 15 13 11 18 18 H 1.48507 * 109.46973 * 330.00183 * 15 13 11 19 19 C 1.46928 * 118.74054 * 306.39086 * 10 9 8 20 20 C 1.53048 * 109.45690 * 149.99976 * 7 6 4 21 21 C 1.52995 * 117.49894 * 211.48121 * 3 2 1 22 22 C 1.52994 * 117.50028 * 280.14087 * 3 2 1 23 23 H 1.09008 * 109.47050 * 182.82953 * 1 2 3 24 24 H 1.09002 * 109.46715 * 302.82484 * 1 2 3 25 25 H 1.08999 * 109.47580 * 62.82848 * 1 2 3 26 26 H 1.08994 * 109.46312 * 30.02797 * 7 6 4 27 27 H 1.08994 * 109.50362 * 298.56875 * 8 7 6 28 28 H 1.09001 * 109.49559 * 58.67145 * 8 7 6 29 29 H 1.09004 * 109.58436 * 294.85420 * 9 8 7 30 30 H 1.08995 * 109.70877 * 174.49717 * 9 8 7 31 31 H 0.97007 * 119.99594 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.58976 * 293.82213 * 19 10 9 33 33 H 1.09005 * 109.70415 * 173.47077 * 19 10 9 34 34 H 1.09005 * 109.49503 * 301.33344 * 20 7 6 35 35 H 1.08997 * 109.50127 * 61.40046 * 20 7 6 36 36 H 1.08996 * 117.50104 * 215.01071 * 21 3 2 37 37 H 1.09009 * 117.49760 * 0.02638 * 21 3 2 38 38 H 1.08998 * 117.49978 * 359.97438 * 22 3 2 39 39 H 1.08999 * 117.49641 * 144.99923 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7657 2.1257 1.2403 5 8 2.0802 3.2921 1.2649 6 8 1.1934 1.5621 2.3158 7 6 0.9828 2.4136 3.4728 8 6 2.2124 2.3519 4.3818 9 6 2.0010 3.2780 5.5837 10 7 0.7416 2.9126 6.2464 11 6 0.7141 2.6328 7.5867 12 1 1.5747 2.1868 8.0630 13 6 -0.4198 2.9224 8.3331 14 7 -1.3326 3.7401 7.8529 15 14 -0.6504 2.1516 10.0188 16 1 -0.0484 3.0319 11.0522 17 1 -2.1005 1.9860 10.2933 18 1 0.0143 0.8240 10.0512 19 6 -0.4876 2.8525 5.4438 20 6 -0.2482 1.9312 4.2436 21 6 3.3548 1.4802 -0.7087 22 6 2.0793 2.0481 -1.3359 23 1 -0.3633 -1.0265 0.0507 24 1 -0.3633 0.5571 0.8636 25 1 -0.3634 0.4693 -0.9142 26 1 0.8257 3.4408 3.1439 27 1 2.3557 1.3295 4.7312 28 1 3.0927 2.6735 3.8253 29 1 1.9480 4.3122 5.2432 30 1 2.8284 3.1659 6.2842 31 1 -2.1252 3.9422 8.3743 32 1 -0.7435 3.8520 5.0920 33 1 -1.3034 2.4586 6.0500 34 1 -1.1192 1.9532 3.5886 35 1 -0.0821 0.9125 4.5938 36 1 4.0626 2.1883 -0.2779 37 1 3.7960 0.5993 -1.1754 38 1 1.6818 1.5407 -2.2149 39 1 1.9478 3.1300 -1.3176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842738679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:11 Heat of formation + Delta-G solvation = -79.332947 kcal Electronic energy + Delta-G solvation = -21372.806529 eV Core-core repulsion = 18089.518142 eV Total energy + Delta-G solvation = -3283.288387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76785 -38.68093 -37.35636 -36.07957 -34.71884 -32.69439 -30.38988 -29.69961 -26.98475 -25.87153 -24.41734 -22.87117 -22.31279 -21.87117 -20.13590 -19.33415 -18.37701 -17.10387 -16.56301 -15.95683 -15.77598 -15.06716 -14.89117 -14.51394 -14.25575 -13.86694 -13.61161 -13.34482 -13.06575 -12.84401 -12.50354 -11.96406 -11.88737 -11.54488 -11.37522 -11.24044 -11.12674 -11.08275 -10.78159 -10.72130 -10.46223 -10.31006 -10.21291 -9.99755 -9.79820 -9.59518 -9.47246 -8.51674 -6.70135 -5.84291 -3.29661 2.03245 2.65302 3.10924 3.35839 3.42855 3.45702 3.63503 4.38718 4.46456 4.53099 4.58587 5.13559 5.19273 5.22864 5.26500 5.33347 5.35317 5.40188 5.49335 5.50223 5.64952 5.70443 5.73665 5.98170 6.20868 6.29384 6.39854 6.47245 6.54588 6.71770 6.75724 6.80712 6.93869 7.23146 7.51279 7.77210 7.88688 8.41667 9.15884 9.77859 10.36671 11.25073 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039282 B = 0.004189 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.621656 B = 6681.865751 C = 6934.075014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C 0.023 3.977 4 C 0.478 3.522 5 O -0.504 6.504 6 O -0.344 6.344 7 C 0.096 3.904 8 C -0.146 4.146 9 C 0.149 3.851 10 N -0.591 5.591 11 C -0.258 4.258 12 H 0.065 0.935 13 C 0.007 3.993 14 N -0.901 5.901 15 Si 0.903 3.097 16 H -0.286 1.286 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.177 3.823 20 C -0.135 4.135 21 C -0.121 4.121 22 C -0.164 4.164 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.255 0.745 32 H 0.023 0.977 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 -5.467 -17.291 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.251 6.251 3 C -0.019 4.019 4 C 0.321 3.679 5 O -0.393 6.393 6 O -0.260 6.260 7 C 0.042 3.958 8 C -0.185 4.185 9 C 0.022 3.978 10 N -0.314 5.314 11 C -0.388 4.388 12 H 0.083 0.917 13 C -0.192 4.192 14 N -0.545 5.545 15 Si 0.733 3.267 16 H -0.213 1.213 17 H -0.215 1.215 18 H -0.203 1.203 19 C 0.051 3.949 20 C -0.174 4.174 21 C -0.157 4.157 22 C -0.202 4.202 23 H 0.111 0.889 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.425 -5.230 -17.122 18.441 hybrid contribution -0.431 -0.091 0.920 1.020 sum 3.994 -5.322 -16.202 17.515 Atomic orbital electron populations 1.22929 0.80005 1.03446 1.00863 1.87934 1.20709 1.22137 1.94278 1.21372 1.03987 0.86623 0.89953 1.22802 0.74626 0.86104 0.84386 1.90664 1.48548 1.17103 1.83028 1.86616 1.71201 1.45111 1.23078 1.23013 0.97582 0.93765 0.81435 1.22461 0.95768 1.02438 0.97834 1.20871 0.90595 0.94317 0.91981 1.44065 1.02495 1.79410 1.05407 1.19150 1.01446 1.34271 0.83910 0.91697 1.25141 0.98963 0.97299 0.97828 1.70025 1.11403 1.34680 1.38394 0.86294 0.77082 0.79322 0.84043 1.21281 1.21496 1.20348 1.20739 0.90663 0.94884 0.88631 1.22463 0.94122 1.02533 0.98290 1.23329 0.89490 1.03384 0.99540 1.23647 1.00906 1.01573 0.94038 0.88897 0.92453 0.93948 0.90357 0.91272 0.92712 0.96077 0.92016 0.93512 0.95898 0.89134 0.92504 0.91344 0.86578 0.86479 0.86781 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.78 101.05 1.09 1.34 16 2 O -0.33 -4.30 10.72 -46.58 -0.50 -4.80 16 3 C 0.02 0.29 2.47 -91.78 -0.23 0.06 16 4 C 0.48 7.71 7.26 36.00 0.26 7.97 16 5 O -0.50 -9.06 15.66 -18.75 -0.29 -9.36 16 6 O -0.34 -6.01 8.32 -43.85 -0.37 -6.38 16 7 C 0.10 1.81 2.41 -26.69 -0.06 1.75 16 8 C -0.15 -2.79 5.72 -26.61 -0.15 -2.95 16 9 C 0.15 3.25 6.52 -3.71 -0.02 3.22 16 10 N -0.59 -14.96 2.97 -172.31 -0.51 -15.47 16 11 C -0.26 -7.09 9.55 -15.06 -0.14 -7.24 16 12 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 13 C 0.01 0.19 4.91 -17.43 -0.09 0.10 16 14 N -0.90 -25.99 11.40 55.49 0.63 -25.35 16 15 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.18 4.21 5.27 -3.71 -0.02 4.19 16 20 C -0.13 -2.65 5.74 -26.61 -0.15 -2.80 16 21 C -0.12 -1.16 10.09 -26.70 -0.27 -1.43 16 22 C -0.16 -1.55 9.99 -26.70 -0.27 -1.81 16 23 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 24 H 0.06 0.70 6.60 -51.93 -0.34 0.36 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 1.57 7.16 -51.93 -0.37 1.19 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 2.36 6.30 -51.93 -0.33 2.03 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.12 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.11 1.10 7.90 -51.93 -0.41 0.69 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -30.92 322.32 -7.33 -38.25 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.06 Total: -0.64 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.05 Total: 2.42 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.12 Total: -40.82 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.16 Total: -20.53 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.92 -7.33 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842738679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.084 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds