Wall clock time and date at job start Mon Mar 30 2020 05:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99790 * 2 1 4 4 C 1.50696 * 115.54650 * 65.81563 * 3 2 1 5 5 O 1.20828 * 119.99698 * 188.82365 * 4 3 2 6 6 O 1.34233 * 120.00270 * 8.55025 * 4 3 2 7 7 C 1.45197 * 116.99909 * 180.27576 * 6 4 3 8 8 C 1.53038 * 109.45932 * 270.06070 * 7 6 4 9 9 C 1.53195 * 109.31376 * 178.61527 * 8 7 6 10 10 N 1.46923 * 108.77194 * 54.63866 * 9 8 7 11 11 C 1.36942 * 120.63093 * 126.37160 * 10 9 8 12 12 H 1.07997 * 119.99826 * 328.60447 * 11 10 9 13 13 C 1.38810 * 120.00255 * 148.60383 * 11 10 9 14 14 N 1.31619 * 119.99691 * 343.75616 * 13 11 10 15 15 Si 1.86792 * 120.00154 * 163.75180 * 13 11 10 16 16 H 1.48498 * 109.47133 * 90.00061 * 15 13 11 17 17 H 1.48501 * 109.47278 * 210.00210 * 15 13 11 18 18 H 1.48507 * 109.46973 * 330.00183 * 15 13 11 19 19 C 1.46928 * 118.74054 * 306.39086 * 10 9 8 20 20 C 1.53048 * 109.45690 * 149.99976 * 7 6 4 21 21 C 1.52995 * 117.49894 * 211.48121 * 3 2 1 22 22 C 1.52994 * 117.50028 * 280.14087 * 3 2 1 23 23 H 1.09008 * 109.47050 * 182.82953 * 1 2 3 24 24 H 1.09002 * 109.46715 * 302.82484 * 1 2 3 25 25 H 1.08999 * 109.47580 * 62.82848 * 1 2 3 26 26 H 1.08994 * 109.46312 * 30.02797 * 7 6 4 27 27 H 1.08994 * 109.50362 * 298.56875 * 8 7 6 28 28 H 1.09001 * 109.49559 * 58.67145 * 8 7 6 29 29 H 1.09004 * 109.58436 * 294.85420 * 9 8 7 30 30 H 1.08995 * 109.70877 * 174.49717 * 9 8 7 31 31 H 0.97007 * 119.99594 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.58976 * 293.82213 * 19 10 9 33 33 H 1.09005 * 109.70415 * 173.47077 * 19 10 9 34 34 H 1.09005 * 109.49503 * 301.33344 * 20 7 6 35 35 H 1.08997 * 109.50127 * 61.40046 * 20 7 6 36 36 H 1.08996 * 117.50104 * 215.01071 * 21 3 2 37 37 H 1.09009 * 117.49760 * 0.02638 * 21 3 2 38 38 H 1.08998 * 117.49978 * 359.97438 * 22 3 2 39 39 H 1.08999 * 117.49641 * 144.99923 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7657 2.1257 1.2403 5 8 2.0802 3.2921 1.2649 6 8 1.1934 1.5621 2.3158 7 6 0.9828 2.4136 3.4728 8 6 2.2124 2.3519 4.3818 9 6 2.0010 3.2780 5.5837 10 7 0.7416 2.9126 6.2464 11 6 0.7141 2.6328 7.5867 12 1 1.5747 2.1868 8.0630 13 6 -0.4198 2.9224 8.3331 14 7 -1.3326 3.7401 7.8529 15 14 -0.6504 2.1516 10.0188 16 1 -0.0484 3.0319 11.0522 17 1 -2.1005 1.9860 10.2933 18 1 0.0143 0.8240 10.0512 19 6 -0.4876 2.8525 5.4438 20 6 -0.2482 1.9312 4.2436 21 6 3.3548 1.4802 -0.7087 22 6 2.0793 2.0481 -1.3359 23 1 -0.3633 -1.0265 0.0507 24 1 -0.3633 0.5571 0.8636 25 1 -0.3634 0.4693 -0.9142 26 1 0.8257 3.4408 3.1439 27 1 2.3557 1.3295 4.7312 28 1 3.0927 2.6735 3.8253 29 1 1.9480 4.3122 5.2432 30 1 2.8284 3.1659 6.2842 31 1 -2.1252 3.9422 8.3743 32 1 -0.7435 3.8520 5.0920 33 1 -1.3034 2.4586 6.0500 34 1 -1.1192 1.9532 3.5886 35 1 -0.0821 0.9125 4.5938 36 1 4.0626 2.1883 -0.2779 37 1 3.7960 0.5993 -1.1754 38 1 1.6818 1.5407 -2.2149 39 1 1.9478 3.1300 -1.3176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842738679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:11 Heat of formation + Delta-G solvation = -97.330678 kcal Electronic energy + Delta-G solvation = -21373.586969 eV Core-core repulsion = 18089.518142 eV Total energy + Delta-G solvation = -3284.068828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.00860 -39.84794 -38.80686 -37.55193 -35.65194 -34.60934 -32.19036 -31.54557 -27.84578 -27.47251 -25.95380 -24.05467 -23.62329 -23.52560 -21.33091 -21.04092 -19.53235 -18.90116 -18.00288 -17.19152 -16.82394 -16.77904 -16.00671 -15.98642 -15.46696 -15.29320 -15.03469 -14.95144 -14.58358 -14.38636 -14.22990 -13.32117 -13.11880 -12.90786 -12.77076 -12.63863 -12.51943 -12.50176 -12.25212 -12.16614 -12.05915 -12.01080 -11.89293 -11.54056 -11.30588 -11.11837 -10.69660 -10.59493 -8.74264 -7.93364 -5.42575 0.85990 1.42557 1.47879 1.48765 1.58896 2.25509 2.49008 2.76689 3.23220 3.37014 3.54131 3.56295 3.72409 3.75641 3.80452 4.08736 4.30661 4.38732 4.45687 4.51336 4.52919 4.58497 4.67782 4.72711 4.80377 4.81301 4.88042 4.90585 4.99546 5.05418 5.16954 5.31988 5.39128 5.59012 5.63162 5.86349 6.35125 6.59934 7.08908 7.75737 8.31164 9.14519 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039282 B = 0.004189 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.621656 B = 6681.865751 C = 6934.075014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C -0.004 4.004 4 C 0.473 3.527 5 O -0.529 6.529 6 O -0.345 6.345 7 C 0.103 3.897 8 C -0.132 4.132 9 C 0.147 3.853 10 N -0.609 5.609 11 C -0.273 4.273 12 H 0.067 0.933 13 C -0.043 4.043 14 N -0.933 5.933 15 Si 0.970 3.030 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.269 1.269 19 C 0.184 3.816 20 C -0.120 4.120 21 C -0.107 4.107 22 C -0.143 4.143 23 H 0.110 0.890 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.014 0.986 30 H 0.066 0.934 31 H 0.253 0.747 32 H 0.003 0.997 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 -6.805 -18.841 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.260 6.260 3 C -0.047 4.047 4 C 0.318 3.682 5 O -0.419 6.419 6 O -0.261 6.261 7 C 0.048 3.952 8 C -0.171 4.171 9 C 0.022 3.978 10 N -0.332 5.332 11 C -0.403 4.403 12 H 0.085 0.915 13 C -0.239 4.239 14 N -0.578 5.578 15 Si 0.797 3.203 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.194 1.194 19 C 0.058 3.942 20 C -0.159 4.159 21 C -0.144 4.144 22 C -0.180 4.180 23 H 0.128 0.872 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.270 -6.581 -18.697 20.510 hybrid contribution -0.652 0.362 1.319 1.515 sum 4.618 -6.219 -17.378 19.027 Atomic orbital electron populations 1.23077 0.79234 1.04506 1.00929 1.87925 1.21681 1.22207 1.94220 1.21524 1.06845 0.86878 0.89426 1.23659 0.73506 0.86340 0.84709 1.90649 1.49614 1.18240 1.83412 1.86624 1.71782 1.44631 1.23106 1.22683 0.96975 0.93341 0.82161 1.22269 0.96468 1.01607 0.96805 1.20951 0.89420 0.94560 0.92917 1.44314 1.03772 1.79860 1.05298 1.19479 1.01669 1.34050 0.85068 0.91538 1.25907 0.98738 0.97786 1.01443 1.70170 1.11803 1.36026 1.39807 0.85252 0.76724 0.78652 0.79632 1.21002 1.21611 1.19414 1.20516 0.89663 0.94498 0.89503 1.22175 0.95609 1.01069 0.97067 1.23545 0.88702 1.04126 0.98009 1.23793 1.00134 1.01308 0.92759 0.87195 0.94523 0.91943 0.91603 0.91273 0.91295 0.96759 0.91512 0.93822 0.97934 0.91821 0.90439 0.91441 0.86698 0.84083 0.84071 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.78 113.37 1.22 1.57 16 2 O -0.34 -8.05 10.72 -138.13 -1.48 -9.53 16 3 C 0.00 -0.10 2.47 -11.54 -0.03 -0.13 16 4 C 0.47 14.76 7.26 71.23 0.52 15.27 16 5 O -0.53 -18.66 15.66 21.96 0.34 -18.32 16 6 O -0.35 -11.79 8.32 -47.07 -0.39 -12.18 16 7 C 0.10 3.87 2.41 30.62 0.07 3.94 16 8 C -0.13 -5.00 5.72 30.67 0.18 -4.83 16 9 C 0.15 6.46 6.52 86.36 0.56 7.02 16 10 N -0.61 -31.32 2.97 -699.08 -2.08 -33.40 16 11 C -0.27 -15.13 9.55 84.03 0.80 -14.33 16 12 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 13 C -0.04 -2.37 4.91 84.86 0.42 -1.96 16 14 N -0.93 -55.00 11.40 21.65 0.25 -54.76 16 15 Si 0.97 44.52 29.58 68.60 2.03 46.55 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 C 0.18 9.00 5.27 86.36 0.46 9.46 16 20 C -0.12 -4.72 5.74 30.67 0.18 -4.54 16 21 C -0.11 -1.74 10.09 30.61 0.31 -1.43 16 22 C -0.14 -2.25 9.99 30.61 0.31 -1.95 16 23 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.04 0.85 6.60 -2.39 -0.02 0.84 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 2.66 7.16 -2.39 -0.02 2.64 16 27 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 31 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 32 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.06 3.44 6.30 -2.38 -0.02 3.42 16 34 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.14 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.86 7.90 -2.39 -0.02 1.84 16 Total: -1.00 -66.78 322.32 4.68 -62.10 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.03 Total: 11.43 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.99 Total: 8.11 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -1.83 Total: -88.16 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.53 Total: -40.03 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.78 4.68 -62.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842738679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.234 kcal (2) G-P(sol) polarization free energy of solvation -66.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds