Wall clock time and date at job start Mon Mar 30 2020 04:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.45761 * 117.94844 * 2 1 4 4 C 1.52923 * 110.48732 * 160.92561 * 3 2 1 5 5 C 1.53337 * 108.67551 * 50.74986 * 4 3 2 6 6 C 1.53068 * 108.42929 * 292.46903 * 5 4 3 7 7 H 1.09002 * 109.40169 * 288.77167 * 6 5 4 8 8 O 1.45198 * 109.40141 * 168.94401 * 6 5 4 9 9 C 1.34227 * 117.00023 * 149.82873 * 8 6 5 10 10 O 1.20829 * 119.99964 * 0.02562 * 9 8 6 11 11 C 1.50702 * 119.99988 * 179.97438 * 9 8 6 12 12 C 1.53007 * 109.46765 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46456 * 180.02562 * 12 11 9 14 14 C 1.50710 * 109.46768 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99790 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99978 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99867 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99757 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47227 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47037 * 120.00668 * 18 16 14 21 21 H 1.48498 * 109.46932 * 240.00449 * 18 16 14 22 22 C 1.33182 * 117.99760 * 179.97438 * 2 1 3 23 23 O 1.21283 * 118.11795 * 2.21476 * 22 2 1 24 24 H 1.09001 * 109.47167 * 89.99729 * 1 2 3 25 25 H 1.09004 * 109.47364 * 210.00245 * 1 2 3 26 26 H 1.09005 * 109.47194 * 330.00312 * 1 2 3 27 27 H 1.09004 * 109.29628 * 40.61340 * 3 2 1 28 28 H 1.08993 * 109.29838 * 281.23744 * 3 2 1 29 29 H 1.08999 * 109.60042 * 290.99316 * 4 3 2 30 30 H 1.09004 * 109.60096 * 170.51463 * 4 3 2 31 31 H 1.08998 * 109.67455 * 172.73195 * 5 4 3 32 32 H 1.09005 * 109.67279 * 52.20826 * 5 4 3 33 33 H 1.08997 * 109.47109 * 299.99674 * 11 9 8 34 34 H 1.08997 * 109.47103 * 60.00384 * 11 9 8 35 35 H 1.08997 * 109.46912 * 299.99637 * 12 11 9 36 36 H 1.08997 * 109.47125 * 60.00239 * 12 11 9 37 37 H 1.08997 * 109.47664 * 299.99280 * 13 12 11 38 38 H 1.08997 * 109.47379 * 60.00247 * 13 12 11 39 39 H 0.97005 * 120.00262 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1259 0.4681 5 6 4.2492 -0.0014 -0.3396 6 6 3.5838 -1.3240 0.0487 7 1 3.8880 -1.5997 1.0584 8 8 3.9957 -2.3619 -0.8794 9 6 4.0563 -3.6156 -0.4039 10 8 3.7740 -3.8385 0.7496 11 6 4.4753 -4.7454 -1.3090 12 6 4.4601 -6.0593 -0.5250 13 6 4.8861 -7.2061 -1.4438 14 6 4.8718 -8.5003 -0.6716 15 1 4.5868 -8.5043 0.3701 16 6 5.2214 -9.6792 -1.2953 17 7 5.5679 -9.6743 -2.5639 18 14 5.2028 -11.2833 -0.3382 19 1 4.7794 -11.0202 1.0606 20 1 4.2498 -12.2281 -0.9741 21 1 6.5641 -11.8767 -0.3405 22 6 2.0901 -1.1759 0.0005 23 8 1.4146 -2.1824 -0.0404 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6270 1.9718 0.6697 28 1 2.1398 1.6998 -1.0090 29 1 3.6100 0.8726 1.5282 30 1 4.1384 2.0564 0.3043 31 1 5.3142 -0.0456 -0.1118 32 1 4.1087 0.1813 -1.4050 33 1 3.7826 -4.8151 -2.1476 34 1 5.4815 -4.5569 -1.6833 35 1 5.1525 -5.9898 0.3138 36 1 3.4538 -6.2475 -0.1510 37 1 4.1941 -7.2758 -2.2830 38 1 5.8926 -7.0177 -1.8175 39 1 5.8142 -10.5036 -3.0026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848864779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:07 Heat of formation + Delta-G solvation = -135.595062 kcal Electronic energy + Delta-G solvation = -20551.795082 eV Core-core repulsion = 17266.066987 eV Total energy + Delta-G solvation = -3285.728096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16728 -39.68296 -36.84454 -36.48105 -34.23676 -33.75749 -32.05256 -29.75574 -27.99370 -27.45416 -24.86280 -23.70838 -22.71769 -21.16438 -19.76776 -19.15160 -17.65305 -17.28720 -16.97110 -16.42840 -16.01134 -15.59384 -15.27486 -14.58688 -14.39644 -14.18763 -13.94258 -13.59961 -13.28410 -12.96157 -12.60093 -12.30319 -12.14666 -11.98274 -11.80289 -11.68608 -11.48522 -11.29823 -11.16846 -10.80818 -10.61822 -10.51124 -10.11597 -9.72641 -9.65458 -9.34738 -9.06071 -9.02838 -8.30245 -5.95488 -3.96902 2.14358 2.49385 2.74113 3.01536 3.35945 3.43065 3.49073 4.11751 4.21085 4.26111 4.37157 4.51800 4.75176 4.88269 4.98680 4.99906 5.16624 5.25634 5.27922 5.34655 5.40715 5.47397 5.58376 5.66331 5.69665 5.75488 6.04267 6.16090 6.60374 6.69874 6.89588 7.06634 7.14268 7.72501 7.84479 7.88832 8.04767 8.09415 8.48056 9.10075 9.66942 11.16100 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042356 B = 0.003174 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.905084 B = 8819.780064 C = 9086.631891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.607 5.607 3 C 0.110 3.890 4 C -0.134 4.134 5 C -0.119 4.119 6 C 0.078 3.922 7 H 0.115 0.885 8 O -0.342 6.342 9 C 0.463 3.537 10 O -0.495 6.495 11 C -0.108 4.108 12 C -0.100 4.100 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.500 3.500 23 O -0.524 6.524 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 27.540 3.541 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C -0.012 4.012 4 C -0.172 4.172 5 C -0.157 4.157 6 C 0.019 3.981 7 H 0.132 0.868 8 O -0.259 6.259 9 C 0.306 3.694 10 O -0.381 6.381 11 C -0.145 4.145 12 C -0.137 4.137 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.286 3.714 23 O -0.399 6.399 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.104 26.820 3.752 27.558 hybrid contribution -0.097 -0.767 0.523 0.933 sum -5.202 26.053 4.275 26.909 Atomic orbital electron populations 1.21724 0.79111 1.03329 1.02278 1.47197 1.07629 1.05770 1.73653 1.21498 0.93169 0.84540 1.02030 1.21888 0.94727 0.99677 1.00861 1.21762 1.00999 0.90804 1.02148 1.22375 0.90693 0.88341 0.96680 0.86781 1.86673 1.78842 1.17549 1.42808 1.24454 0.73417 0.82851 0.88684 1.90632 1.44508 1.83354 1.19562 1.21685 1.03594 0.90822 0.98445 1.21585 1.02053 0.91344 0.98747 1.19135 0.96679 0.91345 0.94481 1.21290 1.44983 0.92161 0.97146 0.92472 1.25020 0.95401 0.99188 0.94928 1.69972 1.46375 1.27098 1.10208 0.86523 0.77545 0.83616 0.80274 1.19683 1.21035 1.21042 1.20353 0.90844 0.83274 0.76920 1.90791 1.65581 1.35676 1.47870 0.92436 0.90117 0.91165 0.90267 0.91244 0.90459 0.88520 0.89327 0.89583 0.88070 0.88107 0.92445 0.92316 0.96321 0.96341 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.22 59.84 0.61 1.29 16 2 N -0.61 -6.05 3.20 -182.90 -0.59 -6.64 16 3 C 0.11 0.61 6.39 -4.48 -0.03 0.58 16 4 C -0.13 -0.66 6.02 -26.60 -0.16 -0.82 16 5 C -0.12 -0.92 5.69 -26.52 -0.15 -1.07 16 6 C 0.08 1.00 2.70 -28.10 -0.08 0.92 16 7 H 0.11 1.52 7.15 -51.93 -0.37 1.15 16 8 O -0.34 -5.37 9.76 -44.99 -0.44 -5.80 16 9 C 0.46 8.53 7.41 36.01 0.27 8.80 16 10 O -0.50 -10.49 15.02 -18.90 -0.28 -10.77 16 11 C -0.11 -1.96 5.81 -27.88 -0.16 -2.12 16 12 C -0.10 -2.23 4.44 -26.73 -0.12 -2.35 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.22 9.11 -34.43 -0.31 -15.53 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 18 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.50 7.11 7.22 -11.95 -0.09 7.02 16 23 O -0.52 -9.99 15.30 -10.95 -0.17 -10.16 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.88 7.20 -51.93 -0.37 0.50 16 26 H 0.07 0.38 7.86 -51.93 -0.41 -0.03 16 27 H 0.08 0.28 7.92 -51.93 -0.41 -0.14 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.65 8.13 -51.93 -0.42 0.22 16 33 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 34 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -36.75 326.64 -7.47 -44.22 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -6.17 Total: -5.05 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.45 Total: -1.35 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.15 Total: -33.31 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.89 Total: -26.74 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.75 -7.47 -44.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.376 kcal (2) G-P(sol) polarization free energy of solvation -36.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds