Wall clock time and date at job start Mon Mar 30 2020 04:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.45761 * 117.94844 * 2 1 4 4 C 1.52923 * 110.48732 * 160.92561 * 3 2 1 5 5 C 1.53337 * 108.67551 * 50.74986 * 4 3 2 6 6 C 1.53068 * 108.42929 * 292.46903 * 5 4 3 7 7 H 1.09002 * 109.40169 * 288.77167 * 6 5 4 8 8 O 1.45198 * 109.40141 * 168.94401 * 6 5 4 9 9 C 1.34227 * 117.00023 * 149.82873 * 8 6 5 10 10 O 1.20829 * 119.99964 * 0.02562 * 9 8 6 11 11 C 1.50702 * 119.99988 * 179.97438 * 9 8 6 12 12 C 1.53007 * 109.46765 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46456 * 180.02562 * 12 11 9 14 14 C 1.50710 * 109.46768 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99790 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99978 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99867 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99757 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47227 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47037 * 120.00668 * 18 16 14 21 21 H 1.48498 * 109.46932 * 240.00449 * 18 16 14 22 22 C 1.33182 * 117.99760 * 179.97438 * 2 1 3 23 23 O 1.21283 * 118.11795 * 2.21476 * 22 2 1 24 24 H 1.09001 * 109.47167 * 89.99729 * 1 2 3 25 25 H 1.09004 * 109.47364 * 210.00245 * 1 2 3 26 26 H 1.09005 * 109.47194 * 330.00312 * 1 2 3 27 27 H 1.09004 * 109.29628 * 40.61340 * 3 2 1 28 28 H 1.08993 * 109.29838 * 281.23744 * 3 2 1 29 29 H 1.08999 * 109.60042 * 290.99316 * 4 3 2 30 30 H 1.09004 * 109.60096 * 170.51463 * 4 3 2 31 31 H 1.08998 * 109.67455 * 172.73195 * 5 4 3 32 32 H 1.09005 * 109.67279 * 52.20826 * 5 4 3 33 33 H 1.08997 * 109.47109 * 299.99674 * 11 9 8 34 34 H 1.08997 * 109.47103 * 60.00384 * 11 9 8 35 35 H 1.08997 * 109.46912 * 299.99637 * 12 11 9 36 36 H 1.08997 * 109.47125 * 60.00239 * 12 11 9 37 37 H 1.08997 * 109.47664 * 299.99280 * 13 12 11 38 38 H 1.08997 * 109.47379 * 60.00247 * 13 12 11 39 39 H 0.97005 * 120.00262 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1259 0.4681 5 6 4.2492 -0.0014 -0.3396 6 6 3.5838 -1.3240 0.0487 7 1 3.8880 -1.5997 1.0584 8 8 3.9957 -2.3619 -0.8794 9 6 4.0563 -3.6156 -0.4039 10 8 3.7740 -3.8385 0.7496 11 6 4.4753 -4.7454 -1.3090 12 6 4.4601 -6.0593 -0.5250 13 6 4.8861 -7.2061 -1.4438 14 6 4.8718 -8.5003 -0.6716 15 1 4.5868 -8.5043 0.3701 16 6 5.2214 -9.6792 -1.2953 17 7 5.5679 -9.6743 -2.5639 18 14 5.2028 -11.2833 -0.3382 19 1 4.7794 -11.0202 1.0606 20 1 4.2498 -12.2281 -0.9741 21 1 6.5641 -11.8767 -0.3405 22 6 2.0901 -1.1759 0.0005 23 8 1.4146 -2.1824 -0.0404 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6270 1.9718 0.6697 28 1 2.1398 1.6998 -1.0090 29 1 3.6100 0.8726 1.5282 30 1 4.1384 2.0564 0.3043 31 1 5.3142 -0.0456 -0.1118 32 1 4.1087 0.1813 -1.4050 33 1 3.7826 -4.8151 -2.1476 34 1 5.4815 -4.5569 -1.6833 35 1 5.1525 -5.9898 0.3138 36 1 3.4538 -6.2475 -0.1510 37 1 4.1941 -7.2758 -2.2830 38 1 5.8926 -7.0177 -1.8175 39 1 5.8142 -10.5036 -3.0026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848864779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:06 Heat of formation + Delta-G solvation = -159.354375 kcal Electronic energy + Delta-G solvation = -20552.825363 eV Core-core repulsion = 17266.066987 eV Total energy + Delta-G solvation = -3286.758377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.26487 -40.91348 -37.92089 -37.62361 -36.20249 -34.59226 -34.08136 -30.74057 -29.73327 -28.17528 -26.36585 -25.03163 -23.47852 -22.79371 -21.45108 -19.96749 -19.00698 -18.55064 -18.26773 -17.87333 -17.25471 -16.89243 -16.50809 -16.30572 -15.54650 -15.23932 -14.90357 -14.72867 -14.47990 -14.19475 -13.86524 -13.66317 -13.47525 -13.20545 -12.97550 -12.75582 -12.68760 -12.56384 -12.52156 -12.42147 -12.19830 -11.90427 -11.69063 -11.63512 -11.40644 -11.16183 -10.76025 -10.55990 -9.85547 -8.21415 -6.31578 0.99911 1.18676 1.39059 1.39615 1.53496 1.73197 1.95826 2.41194 3.11681 3.28777 3.51449 3.57576 3.74631 3.92403 4.02345 4.13906 4.17808 4.35613 4.42473 4.52388 4.59527 4.62060 4.75380 4.85798 4.86874 4.95396 4.99147 4.99965 5.10658 5.17127 5.33411 5.35137 5.50811 5.70030 5.83639 6.21763 6.24641 6.65929 6.83310 6.92768 7.36980 8.90565 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042356 B = 0.003174 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.905084 B = 8819.780064 C = 9086.631891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.597 5.597 3 C 0.099 3.901 4 C -0.127 4.127 5 C -0.112 4.112 6 C 0.069 3.931 7 H 0.103 0.897 8 O -0.339 6.339 9 C 0.468 3.532 10 O -0.530 6.530 11 C -0.102 4.102 12 C -0.086 4.086 13 C 0.026 3.974 14 C -0.548 4.548 15 H 0.052 0.948 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.273 1.273 22 C 0.487 3.513 23 O -0.589 6.589 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.039 0.961 37 H 0.001 0.999 38 H 0.009 0.991 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 29.975 3.773 30.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.330 5.330 3 C -0.022 4.022 4 C -0.165 4.165 5 C -0.150 4.150 6 C 0.011 3.989 7 H 0.121 0.879 8 O -0.255 6.255 9 C 0.313 3.687 10 O -0.419 6.419 11 C -0.139 4.139 12 C -0.123 4.123 13 C -0.011 4.011 14 C -0.586 4.586 15 H 0.070 0.930 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.198 1.198 22 C 0.275 3.725 23 O -0.470 6.470 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.019 0.981 38 H 0.027 0.973 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.639 29.347 3.972 29.975 hybrid contribution -0.281 -1.378 0.431 1.471 sum -4.920 27.968 4.403 28.737 Atomic orbital electron populations 1.21863 0.78467 1.03815 1.02706 1.47397 1.08391 1.06193 1.71010 1.21956 0.93556 0.82506 1.04193 1.21970 0.94416 0.99973 1.00111 1.21888 1.01643 0.88458 1.03007 1.22847 0.90696 0.89544 0.95859 0.87884 1.86618 1.78378 1.17025 1.43460 1.24293 0.72630 0.83859 0.87923 1.90616 1.46166 1.84096 1.20993 1.21516 1.05593 0.88949 0.97884 1.21276 1.00490 0.92409 0.98164 1.19009 0.95606 0.92144 0.94316 1.21685 1.45640 0.93888 0.97353 0.92963 1.25919 0.94667 1.02963 0.95971 1.70073 1.46709 1.28437 1.11665 0.85413 0.78104 0.78820 0.78804 1.19244 1.20164 1.19827 1.20696 0.91309 0.83830 0.76705 1.90758 1.66818 1.38051 1.51387 0.92066 0.93177 0.87046 0.87159 0.89239 0.90661 0.84666 0.87824 0.88993 0.87076 0.85385 0.92909 0.94189 0.98086 0.97312 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 10.22 127.77 1.31 2.50 16 2 N -0.60 -10.98 3.20 -851.86 -2.73 -13.71 16 3 C 0.10 0.70 6.39 86.49 0.55 1.25 16 4 C -0.13 -0.75 6.02 30.68 0.18 -0.57 16 5 C -0.11 -1.44 5.69 30.73 0.17 -1.26 16 6 C 0.07 1.74 2.70 29.71 0.08 1.82 16 7 H 0.10 2.82 7.15 -2.39 -0.02 2.81 16 8 O -0.34 -10.65 9.76 -45.90 -0.45 -11.10 16 9 C 0.47 17.64 7.41 71.24 0.53 18.17 16 10 O -0.53 -23.38 15.02 22.10 0.33 -23.05 16 11 C -0.10 -3.75 5.81 29.85 0.17 -3.58 16 12 C -0.09 -3.96 4.44 30.60 0.14 -3.82 16 13 C 0.03 1.43 4.97 29.85 0.15 1.58 16 14 C -0.55 -32.91 9.11 25.60 0.23 -32.67 16 15 H 0.05 3.11 7.74 -2.91 -0.02 3.08 16 16 C 0.00 0.17 5.46 84.66 0.46 0.63 16 17 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 18 Si 0.96 46.01 29.54 68.60 2.03 48.04 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 C 0.49 14.01 7.22 87.74 0.63 14.65 16 23 O -0.59 -23.72 15.30 12.74 0.19 -23.52 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 1.14 7.20 -2.38 -0.02 1.12 16 26 H 0.11 0.85 7.86 -2.38 -0.02 0.83 16 27 H 0.11 0.20 7.92 -2.38 -0.02 0.18 16 28 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 30 H 0.14 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.10 8.13 -2.38 -0.02 1.08 16 33 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 34 H 0.13 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.05 2.45 8.10 -2.39 -0.02 2.43 16 36 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 37 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -83.59 326.64 5.30 -78.29 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 1.02 Total: 3.32 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.61 Total: -1.31 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -2.45 Total: -70.67 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: 0.08 Total: -57.67 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -83.59 5.30 -78.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.064 kcal (2) G-P(sol) polarization free energy of solvation -83.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds