Wall clock time and date at job start Mon Mar 30 2020 04:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45759 * 117.94376 * 2 1 4 4 C 1.52920 * 110.48524 * 199.07350 * 3 2 1 5 5 C 1.53341 * 108.66814 * 309.23458 * 4 3 2 6 6 C 1.53072 * 108.43683 * 67.52853 * 5 4 3 7 7 H 1.08997 * 109.33217 * 71.20570 * 6 5 4 8 8 O 1.45196 * 109.40166 * 190.99120 * 6 5 4 9 9 C 1.34234 * 116.99938 * 210.42702 * 8 6 5 10 10 O 1.20822 * 119.99973 * 0.02562 * 9 8 6 11 11 C 1.50700 * 120.00068 * 179.97438 * 9 8 6 12 12 C 1.52992 * 109.47257 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47274 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46907 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00411 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99549 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00388 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99824 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47360 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47339 * 119.99977 * 18 16 14 21 21 H 1.48509 * 109.47101 * 239.99886 * 18 16 14 22 22 C 1.33352 * 117.94792 * 179.97438 * 2 1 3 23 23 O 1.21282 * 118.24480 * 357.77737 * 22 2 1 24 24 H 1.08996 * 109.47156 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46803 * 300.02223 * 1 2 3 26 26 H 1.09002 * 109.47553 * 60.01601 * 1 2 3 27 27 H 1.09000 * 109.30046 * 319.38656 * 3 2 1 28 28 H 1.08999 * 109.29596 * 78.76635 * 3 2 1 29 29 H 1.09005 * 109.60319 * 69.00767 * 4 3 2 30 30 H 1.08999 * 109.60558 * 189.48785 * 4 3 2 31 31 H 1.09003 * 109.65610 * 307.80020 * 5 4 3 32 32 H 1.08994 * 109.68346 * 187.27333 * 5 4 3 33 33 H 1.09004 * 109.46932 * 300.00373 * 11 9 8 34 34 H 1.08997 * 109.47392 * 59.99712 * 11 9 8 35 35 H 1.09004 * 109.47330 * 299.99977 * 12 11 9 36 36 H 1.09005 * 109.47124 * 59.99773 * 12 11 9 37 37 H 1.08999 * 109.46783 * 300.00124 * 13 12 11 38 38 H 1.09000 * 109.46608 * 60.00231 * 13 12 11 39 39 H 0.96998 * 120.00131 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5948 1.1260 -0.4681 5 6 4.2492 -0.0010 0.3400 6 6 3.5839 -1.3239 -0.0477 7 1 3.8886 -1.5987 -1.0575 8 8 3.9972 -2.3617 0.8799 9 6 4.0629 -3.6147 0.4028 10 8 3.7847 -3.8368 -0.7518 11 6 4.4847 -4.7441 1.3070 12 6 4.4765 -6.0568 0.5211 13 6 4.9053 -7.2034 1.4389 14 6 4.8966 -8.4964 0.6649 15 1 4.6139 -8.5000 -0.3773 16 6 5.2496 -9.6749 1.2876 17 7 5.5943 -9.6705 2.5567 18 14 5.2395 -11.2776 0.3281 19 1 4.8180 -11.0141 -1.0713 20 1 6.6030 -11.8658 0.3325 21 1 4.2887 -12.2271 0.9605 22 6 2.0900 -1.1780 0.0005 23 8 1.4159 -2.1854 0.0424 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5136 -0.8901 27 1 1.6270 1.9719 -0.6697 28 1 2.1398 1.6998 1.0091 29 1 3.6101 0.8727 -1.5282 30 1 4.1384 2.0565 -0.3043 31 1 4.1083 0.1822 1.4053 32 1 5.3142 -0.0453 0.1125 33 1 5.4896 -4.5525 1.6831 34 1 3.7912 -4.8174 2.1446 35 1 3.4717 -6.2486 0.1446 36 1 5.1703 -5.9832 -0.3164 37 1 5.9102 -7.0113 1.8150 38 1 4.2117 -7.2770 2.2765 39 1 5.8422 -10.4996 2.9948 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848864780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:09 Heat of formation + Delta-G solvation = -135.377108 kcal Electronic energy + Delta-G solvation = -20550.120779 eV Core-core repulsion = 17264.402134 eV Total energy + Delta-G solvation = -3285.718645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16802 -39.68501 -36.85796 -36.48142 -34.23984 -33.74922 -32.05433 -29.75602 -27.99524 -27.45435 -24.85294 -23.70355 -22.70951 -21.16706 -19.77039 -19.14950 -17.65935 -17.30071 -16.99478 -16.43710 -16.00703 -15.59894 -15.27860 -14.57641 -14.39928 -14.19858 -13.93957 -13.60363 -13.29844 -12.98032 -12.56351 -12.30640 -12.09905 -11.97775 -11.79875 -11.74322 -11.48434 -11.29127 -11.17119 -10.80922 -10.62043 -10.51241 -10.12010 -9.72538 -9.65546 -9.34886 -9.05426 -9.03054 -8.30340 -5.95612 -3.97058 2.13002 2.48837 2.73649 3.01036 3.35846 3.42981 3.48964 4.11293 4.21158 4.25612 4.37545 4.51693 4.75205 4.87604 5.00194 5.08074 5.14643 5.22457 5.28107 5.34333 5.40571 5.47299 5.62553 5.66157 5.69352 5.75265 6.03951 6.15810 6.59898 6.69599 6.89332 7.05615 7.14041 7.72320 7.84278 7.87653 8.04642 8.08910 8.47929 9.09955 9.66820 11.15971 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.003172 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.440174 B = 8824.975204 C = 9090.571650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.111 3.889 4 C -0.134 4.134 5 C -0.119 4.119 6 C 0.077 3.923 7 H 0.115 0.885 8 O -0.341 6.341 9 C 0.463 3.537 10 O -0.495 6.495 11 C -0.108 4.108 12 C -0.100 4.100 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.501 3.499 23 O -0.524 6.524 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 27.416 -3.429 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.343 5.343 3 C -0.011 4.011 4 C -0.171 4.171 5 C -0.157 4.157 6 C 0.019 3.981 7 H 0.132 0.868 8 O -0.259 6.259 9 C 0.306 3.694 10 O -0.381 6.381 11 C -0.145 4.145 12 C -0.137 4.137 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.288 3.712 23 O -0.400 6.400 24 H 0.111 0.889 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.163 26.696 -3.641 27.433 hybrid contribution -0.091 -0.748 -0.541 0.927 sum -5.254 25.948 -4.182 26.803 Atomic orbital electron populations 1.21785 0.79243 1.05007 1.01243 1.47197 1.07655 1.05733 1.73733 1.21453 0.93105 0.84550 1.02026 1.21886 0.94726 0.99679 1.00855 1.21763 1.00998 0.90796 1.02151 1.22376 0.90663 0.88360 0.96722 0.86766 1.86676 1.78825 1.17608 1.42755 1.24456 0.73404 0.82846 0.88693 1.90631 1.44625 1.83316 1.19487 1.21683 1.03575 0.90831 0.98455 1.21586 1.02054 0.91365 0.98733 1.19134 0.96667 0.91343 0.94490 1.21286 1.44974 0.92227 0.97092 0.92470 1.25020 0.95397 0.99186 0.94933 1.69972 1.46369 1.27105 1.10209 0.86525 0.77544 0.83606 0.80286 1.19683 1.21041 1.21035 1.20401 0.90850 0.83342 0.76600 1.90775 1.65583 1.35526 1.48100 0.88872 0.92049 0.92130 0.90281 0.91250 0.90465 0.88516 0.89581 0.89320 0.88105 0.88064 0.92316 0.92445 0.96341 0.96322 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.47 59.85 0.63 1.23 16 2 N -0.61 -6.07 3.21 -182.85 -0.59 -6.65 16 3 C 0.11 0.62 6.40 -4.48 -0.03 0.59 16 4 C -0.13 -0.66 6.02 -26.60 -0.16 -0.82 16 5 C -0.12 -0.92 5.69 -26.52 -0.15 -1.07 16 6 C 0.08 0.99 2.69 -28.10 -0.08 0.92 16 7 H 0.11 1.52 7.14 -51.93 -0.37 1.15 16 8 O -0.34 -5.35 9.76 -45.01 -0.44 -5.79 16 9 C 0.46 8.51 7.42 36.01 0.27 8.78 16 10 O -0.50 -10.47 15.03 -18.83 -0.28 -10.75 16 11 C -0.11 -1.96 5.81 -27.89 -0.16 -2.12 16 12 C -0.10 -2.23 4.44 -26.73 -0.12 -2.35 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 18 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.50 7.11 7.23 -11.87 -0.09 7.02 16 23 O -0.52 -9.93 15.07 -10.85 -0.16 -10.10 16 24 H 0.09 1.07 6.59 -51.93 -0.34 0.72 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.29 8.10 -51.93 -0.42 -0.13 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 34 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 36 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 326.56 15.07 4.92 4.92 Total: -1.00 -36.57 326.56 -7.44 -44.01 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -6.17 Total: -4.88 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.44 Total: -1.40 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.15 Total: -33.31 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.89 Total: -26.63 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.57 -7.44 -44.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.368 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds