Wall clock time and date at job start Mon Mar 30 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45759 * 117.94376 * 2 1 4 4 C 1.52920 * 110.48524 * 199.07350 * 3 2 1 5 5 C 1.53341 * 108.66814 * 309.23458 * 4 3 2 6 6 C 1.53072 * 108.43683 * 67.52853 * 5 4 3 7 7 H 1.08997 * 109.33217 * 71.20570 * 6 5 4 8 8 O 1.45196 * 109.40166 * 190.99120 * 6 5 4 9 9 C 1.34234 * 116.99938 * 210.42702 * 8 6 5 10 10 O 1.20822 * 119.99973 * 0.02562 * 9 8 6 11 11 C 1.50700 * 120.00068 * 179.97438 * 9 8 6 12 12 C 1.52992 * 109.47257 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47274 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.46907 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00411 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99549 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00388 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99824 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47360 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47339 * 119.99977 * 18 16 14 21 21 H 1.48509 * 109.47101 * 239.99886 * 18 16 14 22 22 C 1.33352 * 117.94792 * 179.97438 * 2 1 3 23 23 O 1.21282 * 118.24480 * 357.77737 * 22 2 1 24 24 H 1.08996 * 109.47156 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46803 * 300.02223 * 1 2 3 26 26 H 1.09002 * 109.47553 * 60.01601 * 1 2 3 27 27 H 1.09000 * 109.30046 * 319.38656 * 3 2 1 28 28 H 1.08999 * 109.29596 * 78.76635 * 3 2 1 29 29 H 1.09005 * 109.60319 * 69.00767 * 4 3 2 30 30 H 1.08999 * 109.60558 * 189.48785 * 4 3 2 31 31 H 1.09003 * 109.65610 * 307.80020 * 5 4 3 32 32 H 1.08994 * 109.68346 * 187.27333 * 5 4 3 33 33 H 1.09004 * 109.46932 * 300.00373 * 11 9 8 34 34 H 1.08997 * 109.47392 * 59.99712 * 11 9 8 35 35 H 1.09004 * 109.47330 * 299.99977 * 12 11 9 36 36 H 1.09005 * 109.47124 * 59.99773 * 12 11 9 37 37 H 1.08999 * 109.46783 * 300.00124 * 13 12 11 38 38 H 1.09000 * 109.46608 * 60.00231 * 13 12 11 39 39 H 0.96998 * 120.00131 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5948 1.1260 -0.4681 5 6 4.2492 -0.0010 0.3400 6 6 3.5839 -1.3239 -0.0477 7 1 3.8886 -1.5987 -1.0575 8 8 3.9972 -2.3617 0.8799 9 6 4.0629 -3.6147 0.4028 10 8 3.7847 -3.8368 -0.7518 11 6 4.4847 -4.7441 1.3070 12 6 4.4765 -6.0568 0.5211 13 6 4.9053 -7.2034 1.4389 14 6 4.8966 -8.4964 0.6649 15 1 4.6139 -8.5000 -0.3773 16 6 5.2496 -9.6749 1.2876 17 7 5.5943 -9.6705 2.5567 18 14 5.2395 -11.2776 0.3281 19 1 4.8180 -11.0141 -1.0713 20 1 6.6030 -11.8658 0.3325 21 1 4.2887 -12.2271 0.9605 22 6 2.0900 -1.1780 0.0005 23 8 1.4159 -2.1854 0.0424 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3634 0.5136 -0.8901 27 1 1.6270 1.9719 -0.6697 28 1 2.1398 1.6998 1.0091 29 1 3.6101 0.8727 -1.5282 30 1 4.1384 2.0565 -0.3043 31 1 4.1083 0.1822 1.4053 32 1 5.3142 -0.0453 0.1125 33 1 5.4896 -4.5525 1.6831 34 1 3.7912 -4.8174 2.1446 35 1 3.4717 -6.2486 0.1446 36 1 5.1703 -5.9832 -0.3164 37 1 5.9102 -7.0113 1.8150 38 1 4.2117 -7.2770 2.2765 39 1 5.8422 -10.4996 2.9948 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848864780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:08 Heat of formation + Delta-G solvation = -158.928455 kcal Electronic energy + Delta-G solvation = -20551.142042 eV Core-core repulsion = 17264.402134 eV Total energy + Delta-G solvation = -3286.739908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26265 -40.91123 -37.92590 -37.62054 -36.20232 -34.58326 -34.07961 -30.73968 -29.73196 -28.17351 -26.36248 -25.01860 -23.46638 -22.79281 -21.45019 -19.96290 -19.00762 -18.55178 -18.28139 -17.88845 -17.27167 -16.88267 -16.50421 -16.29150 -15.54411 -15.23502 -14.92107 -14.73123 -14.47455 -14.20130 -13.86734 -13.65123 -13.49622 -13.18953 -12.94709 -12.72089 -12.68006 -12.56053 -12.53528 -12.42118 -12.24143 -11.90169 -11.69032 -11.63315 -11.40538 -11.16163 -10.74677 -10.55889 -9.83472 -8.21354 -6.31525 0.99605 1.18258 1.39116 1.39634 1.53508 1.72726 1.95890 2.41228 3.11729 3.27740 3.51401 3.57678 3.74324 3.92460 4.02432 4.13983 4.18162 4.37453 4.43183 4.53762 4.59648 4.62599 4.75812 4.85896 4.89722 4.95404 4.99070 4.99841 5.10688 5.17000 5.33220 5.34846 5.50896 5.70120 5.83738 6.21094 6.24743 6.65906 6.83416 6.92413 7.37057 8.90618 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.003172 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.440174 B = 8824.975204 C = 9090.571650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.598 5.598 3 C 0.100 3.900 4 C -0.127 4.127 5 C -0.112 4.112 6 C 0.068 3.932 7 H 0.104 0.896 8 O -0.338 6.338 9 C 0.469 3.531 10 O -0.531 6.531 11 C -0.102 4.102 12 C -0.086 4.086 13 C 0.026 3.974 14 C -0.548 4.548 15 H 0.052 0.948 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.276 1.276 22 C 0.489 3.511 23 O -0.589 6.589 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.008 0.992 38 H 0.001 0.999 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 29.824 -3.649 30.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.331 5.331 3 C -0.021 4.021 4 C -0.165 4.165 5 C -0.150 4.150 6 C 0.010 3.990 7 H 0.121 0.879 8 O -0.255 6.255 9 C 0.313 3.687 10 O -0.419 6.419 11 C -0.139 4.139 12 C -0.123 4.123 13 C -0.011 4.011 14 C -0.586 4.586 15 H 0.070 0.930 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.788 3.212 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.202 1.202 22 C 0.276 3.724 23 O -0.470 6.470 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.146 0.854 34 H 0.129 0.871 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.027 0.973 38 H 0.019 0.981 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.708 29.195 -3.848 29.821 hybrid contribution -0.276 -1.348 -0.456 1.450 sum -4.984 27.846 -4.304 28.614 Atomic orbital electron populations 1.21914 0.78605 1.03471 1.03698 1.47408 1.08409 1.06133 1.71169 1.21901 0.93490 0.82524 1.04162 1.21966 0.94393 0.99992 1.00102 1.21887 1.01633 0.88445 1.03016 1.22846 0.90677 0.89555 0.95893 0.87879 1.86621 1.78361 1.17083 1.43399 1.24293 0.72618 0.83850 0.87932 1.90615 1.46286 1.84059 1.20916 1.21514 1.05571 0.88964 0.97895 1.21277 1.00493 0.92424 0.98152 1.19009 0.95597 0.92142 0.94325 1.21681 1.45621 0.93953 0.97300 0.92958 1.25918 0.94668 1.02951 0.95982 1.70073 1.46708 1.28438 1.11669 0.85416 0.78100 0.78826 0.78811 1.19241 1.19836 1.20164 1.20730 0.91299 0.83889 0.76435 1.90746 1.66795 1.37858 1.51572 0.92411 0.89621 0.89504 0.87371 0.89205 0.90688 0.84678 0.88964 0.87823 0.85392 0.87058 0.94180 0.92914 0.97314 0.98083 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.47 127.77 1.34 2.39 16 2 N -0.60 -11.01 3.21 -851.60 -2.73 -13.74 16 3 C 0.10 0.73 6.40 86.49 0.55 1.28 16 4 C -0.13 -0.77 6.02 30.68 0.18 -0.58 16 5 C -0.11 -1.43 5.69 30.73 0.17 -1.26 16 6 C 0.07 1.73 2.69 29.71 0.08 1.81 16 7 H 0.10 2.82 7.14 -2.39 -0.02 2.80 16 8 O -0.34 -10.61 9.76 -45.97 -0.45 -11.05 16 9 C 0.47 17.59 7.42 71.24 0.53 18.12 16 10 O -0.53 -23.32 15.03 22.06 0.33 -22.98 16 11 C -0.10 -3.74 5.81 29.85 0.17 -3.57 16 12 C -0.09 -3.95 4.44 30.59 0.14 -3.82 16 13 C 0.03 1.43 4.97 29.85 0.15 1.58 16 14 C -0.55 -32.87 9.11 25.60 0.23 -32.64 16 15 H 0.05 3.11 7.74 -2.91 -0.02 3.08 16 16 C 0.00 0.17 5.46 84.65 0.46 0.63 16 17 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 18 Si 0.96 45.98 29.54 68.60 2.03 48.00 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 C 0.49 14.00 7.23 87.71 0.63 14.64 16 23 O -0.59 -23.55 15.07 12.65 0.19 -23.36 16 24 H 0.06 1.38 6.59 -2.39 -0.02 1.37 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.11 0.26 8.10 -2.39 -0.02 0.24 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.54 8.12 -2.38 -0.02 0.52 16 30 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.09 1.10 8.13 -2.39 -0.02 1.08 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.13 3.98 8.14 -2.38 -0.02 3.96 16 34 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 35 H 0.04 1.96 8.10 -2.38 -0.02 1.94 16 36 H 0.05 2.45 8.10 -2.38 -0.02 2.43 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -83.04 326.56 5.32 -77.72 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.02 Total: 3.74 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 4.65 Total: -1.40 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -2.45 Total: -70.66 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: 0.07 Total: -57.40 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -83.04 5.32 -77.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848864780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.213 kcal (2) G-P(sol) polarization free energy of solvation -83.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds