Wall clock time and date at job start Mon Mar 30 2020 04:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46700 * 2 1 4 4 C 1.46769 * 124.34688 * 269.99994 * 3 2 1 5 5 C 1.54485 * 105.47030 * 197.03928 * 4 3 2 6 6 C 1.54627 * 101.76594 * 334.58477 * 5 4 3 7 7 H 1.09005 * 110.48027 * 143.47533 * 6 5 4 8 8 O 1.45195 * 110.48546 * 265.98400 * 6 5 4 9 9 C 1.34224 * 117.00128 * 209.99895 * 8 6 5 10 10 O 1.20827 * 120.00340 * 0.02562 * 9 8 6 11 11 C 1.50704 * 120.00156 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.47229 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47162 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47371 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00269 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00062 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00000 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47362 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47012 * 120.00265 * 18 16 14 21 21 H 1.48506 * 109.47085 * 240.00142 * 18 16 14 22 22 C 1.34417 * 124.35146 * 90.03014 * 3 2 1 23 23 O 1.21279 * 124.94464 * 359.59579 * 22 3 2 24 24 H 1.09003 * 109.46931 * 299.99786 * 1 2 3 25 25 H 1.08992 * 109.46939 * 59.99992 * 1 2 3 26 26 H 1.09004 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46961 * 239.99989 * 2 1 3 28 28 H 1.08997 * 109.47044 * 119.99298 * 2 1 3 29 29 H 1.08998 * 110.24703 * 78.04283 * 4 3 2 30 30 H 1.08997 * 110.24528 * 316.03524 * 4 3 2 31 31 H 1.09000 * 110.96819 * 216.46072 * 5 4 3 32 32 H 1.08997 * 110.96657 * 92.70464 * 5 4 3 33 33 H 1.08999 * 109.47015 * 300.00496 * 11 9 8 34 34 H 1.08998 * 109.46847 * 60.00341 * 11 9 8 35 35 H 1.08999 * 109.46572 * 299.99945 * 12 11 9 36 36 H 1.09002 * 109.47105 * 59.99747 * 12 11 9 37 37 H 1.09005 * 109.47298 * 300.00269 * 13 12 11 38 38 H 1.09002 * 109.47472 * 59.99782 * 13 12 11 39 39 H 0.96996 * 120.00471 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 -1.2118 5 6 3.1748 3.3439 -0.7488 6 6 2.7702 3.4752 0.7378 7 1 3.6337 3.7455 1.3456 8 8 1.7137 4.4592 0.8918 9 6 1.6727 5.1327 2.0522 10 8 2.4927 4.9078 2.9106 11 6 0.6038 6.1694 2.2844 12 6 0.7823 6.7835 3.6744 13 6 -0.3032 7.8355 3.9103 14 6 -0.1271 8.4408 5.2791 15 1 0.6783 8.1081 5.9172 16 6 -0.9941 9.4194 5.7169 17 7 -1.9752 9.8242 4.9403 18 14 -0.7762 10.1691 7.4139 19 1 0.3921 9.5444 8.0849 20 1 -0.5497 11.6310 7.2838 21 1 -1.9982 9.9276 8.2225 22 6 2.2716 2.0962 1.1097 23 8 2.1227 1.6941 2.2442 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.3636 2.5311 -1.6428 30 1 2.8320 1.5531 -1.9385 31 1 2.9312 4.2515 -1.3011 32 1 4.2334 3.1028 -0.8452 33 1 0.6855 6.9509 1.5290 34 1 -0.3778 5.7004 2.2173 35 1 0.7008 6.0021 4.4299 36 1 1.7640 7.2525 3.7411 37 1 -0.2223 8.6170 3.1547 38 1 -1.2848 7.3662 3.8438 39 1 -2.5849 10.5129 5.2481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849824671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:23 Heat of formation + Delta-G solvation = -133.181740 kcal Electronic energy + Delta-G solvation = -20401.456305 eV Core-core repulsion = 17115.832858 eV Total energy + Delta-G solvation = -3285.623446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.15968 -39.69080 -36.84251 -36.33289 -34.29614 -33.69319 -32.09306 -29.71442 -28.37679 -27.36894 -24.27863 -23.89815 -22.22985 -21.31459 -19.89370 -19.65551 -17.81514 -17.27128 -16.57663 -16.36832 -15.99199 -15.73968 -15.19647 -14.52539 -14.40584 -13.98339 -13.89822 -13.56167 -13.36158 -13.05786 -12.80824 -12.29224 -12.21709 -12.08326 -11.86967 -11.69842 -11.43792 -11.40062 -11.26939 -10.83559 -10.67021 -10.53764 -10.20801 -9.79746 -9.70847 -9.38994 -9.07426 -9.05427 -8.32958 -5.98220 -3.99804 1.95315 2.44469 2.64151 3.04486 3.34335 3.41640 3.47580 3.95629 4.01671 4.41387 4.49288 4.60279 4.68781 4.87398 4.92043 5.03533 5.09222 5.25066 5.35923 5.38050 5.38239 5.51025 5.54329 5.61750 5.67167 5.88324 6.08349 6.21968 6.49893 6.63871 6.73942 6.83839 7.09111 7.68679 7.79991 7.87467 7.97103 8.01856 8.44775 9.07151 9.64335 11.13326 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034915 B = 0.003168 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.761966 B = 8834.945860 C = 8971.422076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.616 5.616 4 C 0.103 3.897 5 C -0.130 4.130 6 C 0.052 3.948 7 H 0.119 0.881 8 O -0.340 6.340 9 C 0.456 3.544 10 O -0.492 6.492 11 C -0.108 4.108 12 C -0.101 4.101 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.506 3.494 23 O -0.506 6.506 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.298 -17.416 -18.289 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.353 5.353 4 C -0.020 4.020 5 C -0.167 4.167 6 C -0.007 4.007 7 H 0.136 0.864 8 O -0.258 6.258 9 C 0.299 3.701 10 O -0.377 6.377 11 C -0.145 4.145 12 C -0.138 4.138 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.292 3.708 23 O -0.379 6.379 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.319 -17.679 -17.408 26.168 hybrid contribution 0.059 0.361 0.852 0.927 sum 8.378 -17.318 -16.556 25.382 Atomic orbital electron populations 1.22169 0.95490 1.02431 1.02849 1.21379 0.94684 0.80674 1.03158 1.48304 1.65764 1.14026 1.07209 1.22137 0.99993 0.92484 0.87344 1.22782 1.00681 1.00001 0.93270 1.23264 0.92206 0.86182 0.99026 0.86356 1.86684 1.50663 1.48328 1.40130 1.24607 0.86023 0.80624 0.78849 1.90672 1.39521 1.64002 1.43463 1.21709 0.95475 0.94727 1.02622 1.21602 1.01701 0.99387 0.91154 1.19129 0.92835 0.92612 0.97028 1.21282 1.13273 1.20264 1.00847 0.92453 1.25017 0.95236 0.96779 0.97477 1.69967 1.16793 1.30339 1.36538 0.86522 0.78081 0.78933 0.84414 1.19664 1.21023 1.21024 1.21007 0.77596 0.87507 0.84723 1.90777 1.51399 1.74757 1.20976 0.92009 0.92245 0.91307 0.90197 0.89954 0.90373 0.89867 0.87423 0.88149 0.87934 0.88074 0.92320 0.92330 0.96322 0.96340 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.12 0.97 6.65 -4.04 -0.03 0.95 16 3 N -0.62 -6.07 2.93 -172.41 -0.51 -6.58 16 4 C 0.10 0.65 7.35 -3.12 -0.02 0.62 16 5 C -0.13 -0.88 6.92 -25.10 -0.17 -1.05 16 6 C 0.05 0.64 3.28 -26.74 -0.09 0.56 16 7 H 0.12 1.56 7.14 -51.93 -0.37 1.19 16 8 O -0.34 -4.92 9.95 -39.24 -0.39 -5.31 16 9 C 0.46 7.93 7.96 36.01 0.29 8.22 16 10 O -0.49 -10.09 15.19 -18.75 -0.28 -10.38 16 11 C -0.11 -1.85 5.81 -27.88 -0.16 -2.01 16 12 C -0.10 -2.18 4.44 -26.73 -0.12 -2.30 16 13 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 18 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.51 7.14 7.72 -10.86 -0.08 7.06 16 23 O -0.51 -9.48 17.59 5.56 0.10 -9.38 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 0.61 8.11 -51.93 -0.42 0.18 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -36.02 334.71 -7.12 -43.14 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -6.24 Total: -4.92 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.56 Total: -2.36 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.23 Total: -32.93 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.58 Total: -25.07 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.02 -7.12 -43.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849824671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.047 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds