Wall clock time and date at job start Mon Mar 30 2020 04:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46700 * 2 1 4 4 C 1.46769 * 124.34688 * 269.99994 * 3 2 1 5 5 C 1.54485 * 105.47030 * 197.03928 * 4 3 2 6 6 C 1.54627 * 101.76594 * 334.58477 * 5 4 3 7 7 H 1.09005 * 110.48027 * 143.47533 * 6 5 4 8 8 O 1.45195 * 110.48546 * 265.98400 * 6 5 4 9 9 C 1.34224 * 117.00128 * 209.99895 * 8 6 5 10 10 O 1.20827 * 120.00340 * 0.02562 * 9 8 6 11 11 C 1.50704 * 120.00156 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.47229 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47162 * 180.02562 * 12 11 9 14 14 C 1.50696 * 109.47371 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00269 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00062 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00000 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47362 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47012 * 120.00265 * 18 16 14 21 21 H 1.48506 * 109.47085 * 240.00142 * 18 16 14 22 22 C 1.34417 * 124.35146 * 90.03014 * 3 2 1 23 23 O 1.21279 * 124.94464 * 359.59579 * 22 3 2 24 24 H 1.09003 * 109.46931 * 299.99786 * 1 2 3 25 25 H 1.08992 * 109.46939 * 59.99992 * 1 2 3 26 26 H 1.09004 * 109.46616 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46961 * 239.99989 * 2 1 3 28 28 H 1.08997 * 109.47044 * 119.99298 * 2 1 3 29 29 H 1.08998 * 110.24703 * 78.04283 * 4 3 2 30 30 H 1.08997 * 110.24528 * 316.03524 * 4 3 2 31 31 H 1.09000 * 110.96819 * 216.46072 * 5 4 3 32 32 H 1.08997 * 110.96657 * 92.70464 * 5 4 3 33 33 H 1.08999 * 109.47015 * 300.00496 * 11 9 8 34 34 H 1.08998 * 109.46847 * 60.00341 * 11 9 8 35 35 H 1.08999 * 109.46572 * 299.99945 * 12 11 9 36 36 H 1.09002 * 109.47105 * 59.99747 * 12 11 9 37 37 H 1.09005 * 109.47298 * 300.00269 * 13 12 11 38 38 H 1.09002 * 109.47472 * 59.99782 * 13 12 11 39 39 H 0.96996 * 120.00471 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 -1.2118 5 6 3.1748 3.3439 -0.7488 6 6 2.7702 3.4752 0.7378 7 1 3.6337 3.7455 1.3456 8 8 1.7137 4.4592 0.8918 9 6 1.6727 5.1327 2.0522 10 8 2.4927 4.9078 2.9106 11 6 0.6038 6.1694 2.2844 12 6 0.7823 6.7835 3.6744 13 6 -0.3032 7.8355 3.9103 14 6 -0.1271 8.4408 5.2791 15 1 0.6783 8.1081 5.9172 16 6 -0.9941 9.4194 5.7169 17 7 -1.9752 9.8242 4.9403 18 14 -0.7762 10.1691 7.4139 19 1 0.3921 9.5444 8.0849 20 1 -0.5497 11.6310 7.2838 21 1 -1.9982 9.9276 8.2225 22 6 2.2716 2.0962 1.1097 23 8 2.1227 1.6941 2.2442 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.3636 2.5311 -1.6428 30 1 2.8320 1.5531 -1.9385 31 1 2.9312 4.2515 -1.3011 32 1 4.2334 3.1028 -0.8452 33 1 0.6855 6.9509 1.5290 34 1 -0.3778 5.7004 2.2173 35 1 0.7008 6.0021 4.4299 36 1 1.7640 7.2525 3.7411 37 1 -0.2223 8.6170 3.1547 38 1 -1.2848 7.3662 3.8438 39 1 -2.5849 10.5129 5.2481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849824671.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:22 Heat of formation + Delta-G solvation = -156.586268 kcal Electronic energy + Delta-G solvation = -20402.471201 eV Core-core repulsion = 17115.832858 eV Total energy + Delta-G solvation = -3286.638343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.22911 -40.88560 -38.00174 -37.45739 -36.20853 -34.47271 -34.07429 -30.60194 -29.94021 -28.39190 -26.13412 -24.61400 -23.36316 -22.58895 -21.54006 -20.60135 -19.09914 -18.58444 -18.11472 -17.60608 -17.35861 -16.65791 -16.50818 -16.24044 -15.66592 -14.99436 -14.91637 -14.58867 -14.54951 -14.20090 -13.95202 -13.70544 -13.64999 -13.31028 -12.87673 -12.84026 -12.67160 -12.62489 -12.53047 -12.41232 -12.23047 -12.01448 -11.71579 -11.63172 -11.41291 -11.17028 -10.85176 -10.55604 -9.85455 -8.21404 -6.31255 0.84093 1.10453 1.39167 1.39825 1.53445 1.78453 1.97238 2.41284 3.11605 3.11912 3.31562 3.60571 3.83096 4.05491 4.05906 4.08697 4.14511 4.20319 4.40512 4.45082 4.63141 4.65308 4.77993 4.86033 4.88675 4.89999 4.99078 5.02492 5.11840 5.22621 5.25778 5.51106 5.52183 5.70676 5.84202 5.90661 6.25111 6.62062 6.83797 6.90175 7.37392 8.90416 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034915 B = 0.003168 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.761966 B = 8834.945860 C = 8971.422076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.115 3.885 3 N -0.605 5.605 4 C 0.097 3.903 5 C -0.115 4.115 6 C 0.040 3.960 7 H 0.103 0.897 8 O -0.331 6.331 9 C 0.463 3.537 10 O -0.531 6.531 11 C -0.101 4.101 12 C -0.088 4.088 13 C 0.026 3.974 14 C -0.548 4.548 15 H 0.051 0.949 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.962 3.038 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.276 1.276 22 C 0.490 3.510 23 O -0.571 6.571 24 H 0.023 0.977 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.009 0.991 38 H 0.002 0.998 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -17.873 -20.736 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.339 5.339 4 C -0.024 4.024 5 C -0.152 4.152 6 C -0.019 4.019 7 H 0.121 0.879 8 O -0.247 6.247 9 C 0.307 3.693 10 O -0.419 6.419 11 C -0.138 4.138 12 C -0.126 4.126 13 C -0.011 4.011 14 C -0.586 4.586 15 H 0.070 0.930 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.202 1.202 22 C 0.276 3.724 23 O -0.450 6.450 24 H 0.042 0.958 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.020 0.980 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.865 -18.151 -19.944 28.387 hybrid contribution -0.119 0.421 1.505 1.567 sum 8.746 -17.730 -18.439 27.034 Atomic orbital electron populations 1.22138 0.95460 1.03374 1.01517 1.21624 0.94693 0.79871 1.04352 1.48525 1.63492 1.14609 1.07283 1.22532 1.01073 0.92459 0.86303 1.22948 1.02381 1.01213 0.88641 1.23661 0.90701 0.84616 1.02908 0.87944 1.86637 1.51551 1.48389 1.38135 1.24473 0.85228 0.80479 0.79121 1.90665 1.41052 1.65298 1.44860 1.21531 0.96181 0.95631 1.00442 1.21298 0.99759 0.97812 0.93722 1.19004 0.93295 0.93141 0.95615 1.21689 1.13498 1.21084 1.02313 0.93033 1.25891 0.94774 0.97119 1.01641 1.70063 1.17442 1.30850 1.38453 0.85442 0.78230 0.78309 0.79332 1.19311 1.19873 1.20196 1.21431 0.77604 0.88573 0.84827 1.90730 1.54542 1.76132 1.23603 0.95794 0.90933 0.89350 0.85797 0.91905 0.89253 0.85650 0.85520 0.85399 0.85141 0.86703 0.94150 0.92965 0.97264 0.97956 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 71.98 0.74 -1.69 16 2 C 0.12 1.62 6.65 86.38 0.57 2.19 16 3 N -0.60 -10.78 2.93 -817.97 -2.40 -13.18 16 4 C 0.10 0.80 7.35 86.83 0.64 1.44 16 5 C -0.11 -1.15 6.92 31.65 0.22 -0.93 16 6 C 0.04 0.95 3.28 30.59 0.10 1.05 16 7 H 0.10 2.78 7.14 -2.38 -0.02 2.76 16 8 O -0.33 -9.31 9.95 -51.36 -0.51 -9.82 16 9 C 0.46 16.23 7.96 71.24 0.57 16.80 16 10 O -0.53 -22.60 15.19 21.96 0.33 -22.26 16 11 C -0.10 -3.43 5.81 29.85 0.17 -3.26 16 12 C -0.09 -3.92 4.44 30.59 0.14 -3.78 16 13 C 0.03 1.41 4.97 29.85 0.15 1.55 16 14 C -0.55 -32.40 9.11 25.60 0.23 -32.17 16 15 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 16 C 0.00 0.23 5.46 84.66 0.46 0.69 16 17 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 18 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 C 0.49 13.96 7.72 87.90 0.68 14.64 16 23 O -0.57 -22.80 17.59 -3.03 -0.05 -22.86 16 24 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 1.15 7.93 -2.39 -0.02 1.13 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.13 0.87 8.11 -2.39 -0.02 0.85 16 32 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 34 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 36 H 0.05 2.36 8.10 -2.39 -0.02 2.34 16 37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -82.56 334.71 5.37 -77.20 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.02 Total: 2.94 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.67 Total: -3.46 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -2.11 Total: -69.30 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.23 Total: -54.94 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -82.56 5.37 -77.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849824671.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.391 kcal (2) G-P(sol) polarization free energy of solvation -82.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds