Wall clock time and date at job start Mon Mar 30 2020 04:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99689 * 2 1 4 4 N 1.34779 * 119.99860 * 179.97438 * 2 1 3 5 5 C 1.47416 * 125.65097 * 0.02562 * 4 2 1 6 6 C 1.54909 * 104.83144 * 155.83522 * 5 4 2 7 7 C 1.55151 * 101.58312 * 37.01283 * 6 5 4 8 8 C 1.47019 * 125.64231 * 179.71612 * 4 2 1 9 9 H 1.08998 * 109.88736 * 300.51417 * 8 4 2 10 10 C 1.53003 * 109.88644 * 61.68368 * 8 4 2 11 11 O 1.45206 * 109.46817 * 293.54484 * 10 8 4 12 12 C 1.34228 * 117.00074 * 180.02562 * 11 10 8 13 13 O 1.20832 * 119.99647 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.99855 * 179.97438 * 12 11 10 15 15 H 1.08993 * 109.47446 * 299.99695 * 14 12 11 16 16 C 1.53001 * 109.47055 * 60.00445 * 14 12 11 17 17 C 1.50702 * 109.47072 * 179.97438 * 14 12 11 18 18 H 1.07997 * 119.99837 * 0.02562 * 17 14 12 19 19 C 1.37873 * 120.00429 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00282 * 180.02562 * 19 17 14 21 21 Si 1.86804 * 119.99703 * 0.02562 * 19 17 14 22 22 H 1.48502 * 109.47414 * 89.99725 * 21 19 17 23 23 H 1.48504 * 109.47066 * 209.99626 * 21 19 17 24 24 H 1.48504 * 109.47070 * 329.99361 * 21 19 17 25 25 H 1.09002 * 109.47152 * 89.99920 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00021 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00002 * 1 2 3 28 28 H 1.09003 * 110.36775 * 274.67709 * 5 4 2 29 29 H 1.09006 * 110.36776 * 36.88817 * 5 4 2 30 30 H 1.09000 * 111.00559 * 155.09027 * 6 5 4 31 31 H 1.09008 * 111.00390 * 278.93505 * 6 5 4 32 32 H 1.08990 * 110.72228 * 82.85847 * 7 6 5 33 33 H 1.09000 * 110.71807 * 205.96167 * 7 6 5 34 34 H 1.08998 * 109.46975 * 53.54000 * 10 8 4 35 35 H 1.08999 * 109.47263 * 173.54276 * 10 8 4 36 36 H 1.08993 * 109.47607 * 59.99348 * 16 14 12 37 37 H 1.08994 * 109.47305 * 179.97438 * 16 14 12 38 38 H 1.09004 * 109.46929 * 299.99400 * 16 14 12 39 39 H 0.97005 * 119.99665 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5731 -2.5103 0.0006 6 6 2.6545 -3.4350 -0.6118 7 6 3.9549 -2.8232 -0.0271 8 6 3.6439 -1.3118 -0.0053 9 1 4.0603 -0.8330 -0.8916 10 6 4.2344 -0.6801 1.2569 11 8 4.0249 0.7563 1.2227 12 6 4.4880 1.4647 2.2646 13 8 5.0494 0.9030 3.1752 14 6 4.3076 2.9604 2.2984 15 1 4.8035 3.4058 1.4360 16 6 2.8152 3.2952 2.2580 17 6 4.9111 3.5106 3.5650 18 1 5.3788 2.8439 4.2742 19 6 4.8671 4.8653 3.8179 20 7 5.3942 5.3454 4.9229 21 14 4.0587 6.0186 2.5908 22 1 2.6180 6.1620 2.9210 23 1 4.7159 7.3488 2.6545 24 1 4.1996 5.4620 1.2212 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.3403 -2.8213 1.0190 29 1 0.6723 -2.5190 -0.6132 30 1 2.5227 -4.4644 -0.2785 31 1 2.6494 -3.3748 -1.7002 32 1 4.1383 -3.1975 0.9800 33 1 4.8054 -3.0330 -0.6758 34 1 3.7437 -1.0980 2.1360 35 1 5.3029 -0.8905 1.3028 36 1 2.3194 2.8498 3.1203 37 1 2.6847 4.3770 2.2829 38 1 2.3783 2.8973 1.3420 39 1 5.3628 6.2985 5.1009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851099155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:16 Heat of formation + Delta-G solvation = -115.551742 kcal Electronic energy + Delta-G solvation = -21720.389020 eV Core-core repulsion = 18435.530068 eV Total energy + Delta-G solvation = -3284.858952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27586 -39.19932 -37.38922 -35.52588 -33.78222 -32.18884 -31.31008 -30.68566 -29.09128 -25.81715 -24.98547 -23.41537 -22.41708 -21.40415 -19.47845 -18.95508 -17.09039 -16.86171 -16.76858 -16.05589 -15.55920 -15.33652 -14.90489 -14.46738 -14.20298 -13.64862 -13.57087 -13.16761 -13.02463 -12.71180 -12.49948 -12.17033 -12.05118 -11.89204 -11.77858 -11.65317 -11.47193 -11.26263 -11.03474 -10.83226 -10.51541 -10.21176 -9.88443 -9.59397 -9.51364 -9.04675 -8.94940 -8.61339 -8.52111 -6.01116 -4.02135 2.82353 2.96071 3.32354 3.38877 3.43446 3.46290 3.52518 4.20953 4.32627 4.45382 4.59688 4.84124 4.90936 5.06373 5.15495 5.20633 5.29254 5.30648 5.32602 5.41208 5.51750 5.52526 5.58586 5.73747 5.76478 5.93661 6.12830 6.30236 6.43030 6.58926 6.72000 6.99637 7.29635 7.36450 7.57148 7.65109 8.41073 8.53382 8.97059 9.13928 9.57513 11.11371 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029614 B = 0.005415 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.279142 B = 5169.880736 C = 5828.872147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.512 3.488 3 O -0.489 6.489 4 N -0.623 5.623 5 C 0.099 3.901 6 C -0.131 4.131 7 C -0.126 4.126 8 C 0.140 3.860 9 H 0.084 0.916 10 C 0.052 3.948 11 O -0.330 6.330 12 C 0.470 3.530 13 O -0.516 6.516 14 C 0.028 3.972 15 H 0.060 0.940 16 C -0.144 4.144 17 C -0.514 4.514 18 H 0.092 0.908 19 C 0.074 3.926 20 N -0.896 5.896 21 Si 0.884 3.116 22 H -0.277 1.277 23 H -0.296 1.296 24 H -0.264 1.264 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 -18.551 -14.095 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.299 3.701 3 O -0.361 6.361 4 N -0.361 5.361 5 C -0.024 4.024 6 C -0.169 4.169 7 C -0.164 4.164 8 C 0.037 3.963 9 H 0.103 0.897 10 C -0.024 4.024 11 O -0.247 6.247 12 C 0.314 3.686 13 O -0.403 6.403 14 C 0.008 3.992 15 H 0.078 0.922 16 C -0.201 4.201 17 C -0.552 4.552 18 H 0.110 0.890 19 C -0.128 4.128 20 N -0.534 5.534 21 Si 0.714 3.286 22 H -0.204 1.204 23 H -0.223 1.223 24 H -0.189 1.189 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.735 -17.889 -13.712 24.552 hybrid contribution -0.389 0.459 -0.334 0.688 sum -10.124 -17.430 -14.046 24.568 Atomic orbital electron populations 1.21887 0.92065 1.04649 1.04140 1.20508 0.90038 0.82541 0.76963 1.90864 1.69726 1.29585 1.45956 1.48649 1.06196 1.05768 1.75508 1.22301 0.96798 0.82461 1.00867 1.22765 0.94141 0.99029 1.00977 1.22621 0.98539 0.92492 1.02724 1.21574 0.81361 0.95402 0.98000 0.89749 1.23242 1.00467 0.81099 0.97628 1.86931 1.73614 1.18513 1.45600 1.24546 0.73596 0.91927 0.78494 1.90518 1.40030 1.72297 1.37472 1.19045 0.95647 0.83817 1.00678 0.92229 1.22064 0.96645 1.00140 1.01281 1.20970 1.37384 0.93510 1.03290 0.88976 1.24902 0.94999 0.97705 0.95193 1.69883 1.45187 1.13585 1.24746 0.86903 0.79145 0.79877 0.82690 1.20366 1.22309 1.18858 0.89351 0.88853 0.90756 0.91476 0.90547 0.89678 0.90426 0.90022 0.89503 0.91963 0.91183 0.93265 0.93653 0.91964 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.67 36.01 0.35 -1.24 16 2 C 0.51 7.19 7.70 -10.98 -0.08 7.11 16 3 O -0.49 -9.29 12.59 -18.61 -0.23 -9.52 16 4 N -0.62 -7.30 3.07 -163.02 -0.50 -7.80 16 5 C 0.10 0.72 6.27 -2.53 -0.02 0.70 16 6 C -0.13 -0.75 7.08 -24.59 -0.17 -0.92 16 7 C -0.13 -0.97 6.47 -24.90 -0.16 -1.13 16 8 C 0.14 1.70 3.31 -66.95 -0.22 1.48 16 9 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 10 C 0.05 0.84 4.88 37.16 0.18 1.02 16 11 O -0.33 -7.02 6.76 -47.25 -0.32 -7.34 16 12 C 0.47 11.78 7.25 36.00 0.26 12.04 16 13 O -0.52 -14.06 15.21 -18.76 -0.29 -14.35 16 14 C 0.03 0.73 2.33 -92.92 -0.22 0.51 16 15 H 0.06 1.57 7.20 -51.93 -0.37 1.19 16 16 C -0.14 -3.49 8.60 37.16 0.32 -3.17 16 17 C -0.51 -15.74 8.95 -34.44 -0.31 -16.05 16 18 H 0.09 3.15 7.00 -52.49 -0.37 2.78 16 19 C 0.07 2.23 5.45 -17.82 -0.10 2.14 16 20 N -0.90 -28.55 13.96 55.43 0.77 -27.77 16 21 Si 0.88 22.74 24.37 -169.99 -4.14 18.60 16 22 H -0.28 -6.89 6.87 56.52 0.39 -6.50 16 23 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.26 -6.52 6.53 56.52 0.37 -6.16 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.53 7.18 -51.93 -0.37 0.16 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.41 7.54 -51.93 -0.39 0.02 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 35 H 0.07 1.10 8.13 -51.93 -0.42 0.67 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.04 1.10 3.27 -51.93 -0.17 0.93 16 38 H 0.06 1.41 6.30 -51.93 -0.33 1.08 16 39 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -37.34 310.49 -6.02 -43.36 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.82 Total: -2.34 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.17 Total: 2.48 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.27 Total: -35.57 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.84 Total: -31.20 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -37.34 -6.02 -43.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851099155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.197 kcal (2) G-P(sol) polarization free energy of solvation -37.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds