Wall clock time and date at job start Mon Mar 30 2020 04:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99689 * 2 1 4 4 N 1.34779 * 119.99860 * 179.97438 * 2 1 3 5 5 C 1.47416 * 125.65097 * 0.02562 * 4 2 1 6 6 C 1.54909 * 104.83144 * 155.83522 * 5 4 2 7 7 C 1.55151 * 101.58312 * 37.01283 * 6 5 4 8 8 C 1.47019 * 125.64231 * 179.71612 * 4 2 1 9 9 H 1.08998 * 109.88736 * 300.51417 * 8 4 2 10 10 C 1.53003 * 109.88644 * 61.68368 * 8 4 2 11 11 O 1.45206 * 109.46817 * 293.54484 * 10 8 4 12 12 C 1.34228 * 117.00074 * 180.02562 * 11 10 8 13 13 O 1.20832 * 119.99647 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.99855 * 179.97438 * 12 11 10 15 15 H 1.08993 * 109.47446 * 299.99695 * 14 12 11 16 16 C 1.53001 * 109.47055 * 60.00445 * 14 12 11 17 17 C 1.50702 * 109.47072 * 179.97438 * 14 12 11 18 18 H 1.07997 * 119.99837 * 0.02562 * 17 14 12 19 19 C 1.37873 * 120.00429 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00282 * 180.02562 * 19 17 14 21 21 Si 1.86804 * 119.99703 * 0.02562 * 19 17 14 22 22 H 1.48502 * 109.47414 * 89.99725 * 21 19 17 23 23 H 1.48504 * 109.47066 * 209.99626 * 21 19 17 24 24 H 1.48504 * 109.47070 * 329.99361 * 21 19 17 25 25 H 1.09002 * 109.47152 * 89.99920 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00021 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00002 * 1 2 3 28 28 H 1.09003 * 110.36775 * 274.67709 * 5 4 2 29 29 H 1.09006 * 110.36776 * 36.88817 * 5 4 2 30 30 H 1.09000 * 111.00559 * 155.09027 * 6 5 4 31 31 H 1.09008 * 111.00390 * 278.93505 * 6 5 4 32 32 H 1.08990 * 110.72228 * 82.85847 * 7 6 5 33 33 H 1.09000 * 110.71807 * 205.96167 * 7 6 5 34 34 H 1.08998 * 109.46975 * 53.54000 * 10 8 4 35 35 H 1.08999 * 109.47263 * 173.54276 * 10 8 4 36 36 H 1.08993 * 109.47607 * 59.99348 * 16 14 12 37 37 H 1.08994 * 109.47305 * 179.97438 * 16 14 12 38 38 H 1.09004 * 109.46929 * 299.99400 * 16 14 12 39 39 H 0.97005 * 119.99665 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5731 -2.5103 0.0006 6 6 2.6545 -3.4350 -0.6118 7 6 3.9549 -2.8232 -0.0271 8 6 3.6439 -1.3118 -0.0053 9 1 4.0603 -0.8330 -0.8916 10 6 4.2344 -0.6801 1.2569 11 8 4.0249 0.7563 1.2227 12 6 4.4880 1.4647 2.2646 13 8 5.0494 0.9030 3.1752 14 6 4.3076 2.9604 2.2984 15 1 4.8035 3.4058 1.4360 16 6 2.8152 3.2952 2.2580 17 6 4.9111 3.5106 3.5650 18 1 5.3788 2.8439 4.2742 19 6 4.8671 4.8653 3.8179 20 7 5.3942 5.3454 4.9229 21 14 4.0587 6.0186 2.5908 22 1 2.6180 6.1620 2.9210 23 1 4.7159 7.3488 2.6545 24 1 4.1996 5.4620 1.2212 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.3403 -2.8213 1.0190 29 1 0.6723 -2.5190 -0.6132 30 1 2.5227 -4.4644 -0.2785 31 1 2.6494 -3.3748 -1.7002 32 1 4.1383 -3.1975 0.9800 33 1 4.8054 -3.0330 -0.6758 34 1 3.7437 -1.0980 2.1360 35 1 5.3029 -0.8905 1.3028 36 1 2.3194 2.8498 3.1203 37 1 2.6847 4.3770 2.2829 38 1 2.3783 2.8973 1.3420 39 1 5.3628 6.2985 5.1009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851099155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:16 Heat of formation + Delta-G solvation = -141.401440 kcal Electronic energy + Delta-G solvation = -21721.509947 eV Core-core repulsion = 18435.530068 eV Total energy + Delta-G solvation = -3285.979879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57102 -40.73338 -38.40259 -37.29053 -35.96874 -33.49382 -33.06432 -31.69110 -29.89305 -27.21079 -26.95320 -25.01609 -23.60001 -22.16497 -21.33485 -19.91496 -19.01014 -18.18115 -17.98699 -17.91757 -17.17501 -16.87661 -16.32741 -15.92753 -15.28211 -15.14345 -14.78055 -14.36936 -14.27697 -14.03823 -13.86345 -13.63670 -13.28610 -13.10612 -13.01077 -12.90470 -12.75407 -12.66025 -12.44094 -12.21117 -12.04259 -11.65231 -11.55177 -11.52363 -11.29948 -11.06047 -10.80517 -10.61619 -9.57819 -8.35982 -6.45153 1.28770 1.35247 1.39522 1.47147 1.81308 1.88800 2.13053 2.27943 2.96732 3.50541 3.61947 3.78269 3.99261 4.03558 4.16417 4.20611 4.26743 4.35815 4.45445 4.52182 4.54165 4.58625 4.68615 4.77897 4.83276 4.94411 4.97543 5.02180 5.07261 5.14737 5.27675 5.34320 5.36496 5.48200 5.54835 6.18948 6.64582 6.67124 7.02106 7.20360 7.40353 8.80824 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029614 B = 0.005415 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.279142 B = 5169.880736 C = 5828.872147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.497 3.503 3 O -0.552 6.552 4 N -0.625 5.625 5 C 0.091 3.909 6 C -0.119 4.119 7 C -0.119 4.119 8 C 0.140 3.860 9 H 0.074 0.926 10 C 0.043 3.957 11 O -0.324 6.324 12 C 0.473 3.527 13 O -0.550 6.550 14 C 0.022 3.978 15 H 0.066 0.934 16 C -0.131 4.131 17 C -0.531 4.531 18 H 0.038 0.962 19 C 0.020 3.980 20 N -0.942 5.942 21 Si 0.952 3.048 22 H -0.257 1.257 23 H -0.287 1.287 24 H -0.246 1.246 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.470 -20.067 -16.683 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.287 3.713 3 O -0.429 6.429 4 N -0.361 5.361 5 C -0.031 4.031 6 C -0.157 4.157 7 C -0.157 4.157 8 C 0.036 3.964 9 H 0.092 0.908 10 C -0.032 4.032 11 O -0.240 6.240 12 C 0.318 3.682 13 O -0.441 6.441 14 C 0.003 3.997 15 H 0.083 0.917 16 C -0.188 4.188 17 C -0.569 4.569 18 H 0.057 0.943 19 C -0.178 4.178 20 N -0.581 5.581 21 Si 0.777 3.223 22 H -0.183 1.183 23 H -0.214 1.214 24 H -0.170 1.170 25 H 0.130 0.870 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.022 -19.483 -16.326 28.119 hybrid contribution 0.370 0.767 0.508 0.992 sum -11.651 -18.716 -15.818 27.134 Atomic orbital electron populations 1.21877 0.88580 1.05445 1.05908 1.21412 0.91882 0.82270 0.75743 1.90811 1.71220 1.31814 1.49070 1.48838 1.06129 1.07172 1.73994 1.22648 0.98147 0.80157 1.02125 1.22795 0.91703 0.99801 1.01373 1.22662 1.00553 0.88871 1.03631 1.21691 0.81952 0.97928 0.94865 0.90835 1.23731 1.01241 0.78218 1.00041 1.86926 1.72425 1.21260 1.43361 1.24252 0.73149 0.91908 0.78851 1.90496 1.41690 1.72928 1.38977 1.18954 0.96999 0.85187 0.98556 0.91676 1.21913 0.94609 1.00261 1.01978 1.21006 1.38093 0.93542 1.04231 0.94348 1.25832 0.95290 0.99342 0.97308 1.70025 1.46496 1.14521 1.27029 0.85797 0.78852 0.77231 0.80410 1.18259 1.21428 1.16953 0.86971 0.89879 0.88094 0.90816 0.87905 0.86994 0.89503 0.89815 0.87812 0.92577 0.90965 0.93803 0.93336 0.90136 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.67 71.24 0.69 -1.90 16 2 C 0.50 13.28 7.70 87.66 0.68 13.96 16 3 O -0.55 -20.82 12.59 20.08 0.25 -20.57 16 4 N -0.63 -13.38 3.07 -788.06 -2.42 -15.79 16 5 C 0.09 0.97 6.27 86.86 0.54 1.51 16 6 C -0.12 -0.85 7.08 31.98 0.23 -0.63 16 7 C -0.12 -1.51 6.47 31.78 0.21 -1.30 16 8 C 0.14 3.22 3.31 45.34 0.15 3.37 16 9 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 10 C 0.04 1.41 4.88 71.98 0.35 1.76 16 11 O -0.32 -14.04 6.76 -43.75 -0.30 -14.34 16 12 C 0.47 24.48 7.25 71.23 0.52 24.99 16 13 O -0.55 -31.51 15.21 21.94 0.33 -31.18 16 14 C 0.02 1.21 2.33 -12.29 -0.03 1.18 16 15 H 0.07 3.43 7.20 -2.39 -0.02 3.41 16 16 C -0.13 -6.25 8.60 71.98 0.62 -5.63 16 17 C -0.53 -33.85 8.95 25.60 0.23 -33.62 16 18 H 0.04 2.80 7.00 -2.91 -0.02 2.78 16 19 C 0.02 1.25 5.45 84.65 0.46 1.71 16 20 N -0.94 -61.65 13.96 21.45 0.30 -61.35 16 21 Si 0.95 46.53 24.37 68.60 1.67 48.20 16 22 H -0.26 -11.75 6.87 99.48 0.68 -11.06 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.25 -11.25 6.53 99.48 0.65 -10.60 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.10 1.07 7.18 -2.38 -0.02 1.06 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.60 7.54 -2.38 -0.02 0.59 16 30 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 31 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.08 1.06 7.86 -2.39 -0.02 1.04 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 35 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 36 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 2.27 3.27 -2.39 -0.01 2.26 16 38 H 0.08 3.58 6.30 -2.38 -0.02 3.56 16 39 H 0.27 16.36 8.31 -92.70 -0.77 15.59 16 Total: -1.00 -85.96 310.49 5.45 -80.52 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.96 Total: 9.09 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 4.64 Total: 5.42 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -2.12 Total: -77.15 kcal Atomic # 8 Polarization: -66.37 SS G_CDS: 0.29 Total: -66.08 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.67 Total: 48.20 kcal Total: -85.96 5.45 -80.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851099155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.884 kcal (2) G-P(sol) polarization free energy of solvation -85.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds