Wall clock time and date at job start Mon Mar 30 2020 04:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47566 * 2 1 4 4 C 1.50697 * 109.47490 * 239.99400 * 2 1 3 5 5 H 1.07999 * 120.00280 * 240.00509 * 4 2 1 6 6 C 1.37879 * 119.99913 * 60.00235 * 4 2 1 7 7 N 1.31514 * 119.99622 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 119.99982 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47398 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47205 * 119.99669 * 8 6 4 11 11 H 1.48501 * 109.47270 * 239.99759 * 8 6 4 12 12 C 1.50704 * 109.46888 * 119.99329 * 2 1 3 13 13 O 1.21278 * 119.99766 * 120.00379 * 12 2 1 14 14 N 1.34780 * 120.00094 * 300.00282 * 12 2 1 15 15 C 1.46496 * 119.99946 * 359.97438 * 14 12 2 16 16 C 1.46502 * 120.00031 * 179.97438 * 14 12 2 17 17 H 1.09002 * 110.35709 * 353.36002 * 16 14 12 18 18 C 1.54460 * 110.40455 * 115.69162 * 16 14 12 19 19 C 1.54369 * 103.04519 * 119.16277 * 18 16 14 20 20 C 1.52995 * 110.32605 * 136.71742 * 19 18 16 21 21 C 1.53003 * 110.32088 * 258.92047 * 19 18 16 22 22 O 1.45944 * 105.07117 * 17.81734 * 19 18 16 23 23 C 1.34765 * 108.47885 * 327.63622 * 22 19 18 24 24 O 1.20826 * 126.04835 * 213.31120 * 23 22 19 25 25 H 1.09004 * 109.47086 * 60.00575 * 1 2 3 26 26 H 1.08993 * 109.47484 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47643 * 300.00725 * 1 2 3 28 28 H 0.97004 * 119.99589 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.46851 * 95.55626 * 15 14 12 30 30 H 1.08999 * 109.47047 * 215.55273 * 15 14 12 31 31 H 1.09002 * 109.47759 * 335.55695 * 15 14 12 32 32 H 1.08995 * 110.70400 * 237.54877 * 18 16 14 33 33 H 1.09003 * 110.70214 * 0.77339 * 18 16 14 34 34 H 1.09009 * 109.47221 * 59.99747 * 20 19 18 35 35 H 1.09000 * 109.47382 * 180.02562 * 20 19 18 36 36 H 1.08998 * 109.47154 * 300.00293 * 20 19 18 37 37 H 1.09002 * 109.46952 * 65.97351 * 21 19 18 38 38 H 1.09006 * 109.47123 * 185.96699 * 21 19 18 39 39 H 1.08994 * 109.47321 * 305.96655 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8294 -2.6034 8 14 2.3215 -1.1206 -4.0077 9 1 3.1466 -2.2873 -3.6034 10 1 1.1662 -1.5871 -4.8158 11 1 3.1468 -0.1877 -4.8163 12 6 2.0322 -0.7103 1.2306 13 8 2.7295 -1.6963 1.1194 14 7 1.7066 -0.2497 2.4547 15 6 0.8648 0.9417 2.5889 16 6 2.1944 -0.9405 3.6510 17 1 2.7025 -1.8644 3.3746 18 6 3.1434 -0.0232 4.4532 19 6 2.4277 0.1138 5.8141 20 6 3.4343 -0.0138 6.9592 21 6 1.6947 1.4543 5.8964 22 8 1.4728 -0.9892 5.8534 23 6 1.0477 -1.2311 4.5976 24 8 -0.0548 -1.6107 4.2809 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7083 1.1606 -3.4845 29 1 -0.1742 0.6395 2.7211 30 1 1.1881 1.5193 3.4549 31 1 0.9539 1.5528 1.6907 32 1 4.1195 -0.4922 4.5768 33 1 3.2402 0.9487 3.9692 34 1 4.1855 0.7712 6.8718 35 1 2.9147 0.0844 7.9123 36 1 3.9198 -0.9884 6.9092 37 1 0.8850 1.4710 5.1669 38 1 1.2841 1.5830 6.8979 39 1 2.3927 2.2638 5.6832 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854608410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:50 Heat of formation + Delta-G solvation = -130.381208 kcal Electronic energy + Delta-G solvation = -21906.287885 eV Core-core repulsion = 18620.785879 eV Total energy + Delta-G solvation = -3285.502006 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.61514 -40.60375 -39.02142 -36.72718 -35.92339 -34.54839 -32.96530 -31.04726 -28.63814 -27.78558 -27.10238 -25.91407 -24.36535 -22.58920 -21.48089 -20.41844 -18.53130 -18.07481 -17.97583 -17.66463 -17.00635 -16.74747 -16.24646 -15.97414 -15.48629 -15.08242 -14.84360 -14.57537 -14.18742 -14.09982 -13.91108 -13.60557 -13.23693 -13.17526 -12.99351 -12.96582 -12.72300 -12.61808 -12.50146 -12.28881 -12.25608 -12.08008 -11.88507 -11.73229 -11.47310 -11.03227 -10.65141 -10.34218 -9.72291 -8.16319 -6.26471 0.58042 1.39114 1.41551 1.54433 1.70168 1.96049 2.14659 2.44684 2.78592 3.13376 3.28512 3.54517 3.66045 3.87849 3.99663 4.09316 4.29946 4.46149 4.62262 4.67345 4.69737 4.73930 4.78308 4.82902 4.88958 4.92565 4.95148 5.00005 5.21029 5.30431 5.37517 5.45234 5.64401 5.71828 5.87750 6.12612 6.19520 6.41813 6.80907 7.28347 7.42644 8.89775 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036027 B = 0.004839 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.998366 B = 5784.596028 C = 5888.714467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.033 3.967 3 H 0.052 0.948 4 C -0.530 4.530 5 H 0.048 0.952 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.276 1.276 11 H -0.271 1.271 12 C 0.525 3.475 13 O -0.579 6.579 14 N -0.603 5.603 15 C 0.065 3.935 16 C 0.073 3.927 17 H 0.120 0.880 18 C -0.146 4.146 19 C 0.100 3.900 20 C -0.139 4.139 21 C -0.173 4.173 22 O -0.352 6.352 23 C 0.484 3.516 24 O -0.476 6.476 25 H 0.074 0.926 26 H 0.011 0.989 27 H 0.060 0.940 28 H 0.265 0.735 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 6.286 19.068 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.012 3.988 3 H 0.070 0.930 4 C -0.569 4.569 5 H 0.066 0.934 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.196 1.196 12 C 0.316 3.684 13 O -0.458 6.458 14 N -0.338 5.338 15 C -0.077 4.077 16 C -0.033 4.033 17 H 0.138 0.862 18 C -0.184 4.184 19 C 0.064 3.936 20 C -0.195 4.195 21 C -0.230 4.230 22 O -0.270 6.270 23 C 0.323 3.677 24 O -0.359 6.359 25 H 0.093 0.907 26 H 0.030 0.970 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.938 5.614 18.934 20.137 hybrid contribution -0.050 -0.864 -1.213 1.490 sum 3.888 4.750 17.720 18.753 Atomic orbital electron populations 1.21827 0.95483 0.99134 1.02380 1.18755 0.94932 0.96224 0.88893 0.93015 1.21300 1.31706 1.12781 0.91077 0.93417 1.25566 0.95122 0.95736 1.01325 1.69942 1.37004 1.23519 1.24310 0.85546 0.78301 0.78633 0.79413 1.20546 1.20194 1.19618 1.21841 0.77788 0.83551 0.85191 1.90495 1.40070 1.28439 1.86817 1.47782 1.52529 1.29762 1.03752 1.22330 0.93913 0.86433 1.04999 1.22414 0.94278 1.00343 0.86280 0.86200 1.23429 0.99234 1.02080 0.93664 1.23480 0.87899 0.84830 0.97408 1.21951 0.97280 1.04583 0.95718 1.22505 1.01594 0.94829 1.04076 1.87371 1.59342 1.51509 1.28733 1.23699 0.87371 0.72813 0.83780 1.90682 1.23196 1.42161 1.79856 0.90722 0.96994 0.92157 0.92528 0.92847 0.88145 0.89091 0.86317 0.86592 0.87169 0.90497 0.91273 0.92820 0.89821 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.56 71.98 0.62 -5.58 16 2 C 0.03 1.66 1.83 -12.29 -0.02 1.64 16 3 H 0.05 2.61 7.42 -2.39 -0.02 2.59 16 4 C -0.53 -30.85 8.37 25.60 0.21 -30.64 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -50.59 11.32 21.45 0.24 -50.34 16 8 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 9 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 C 0.52 24.54 7.07 87.66 0.62 25.15 16 13 O -0.58 -31.08 14.83 -3.02 -0.04 -31.12 16 14 N -0.60 -21.41 2.76 -822.54 -2.27 -23.69 16 15 C 0.06 1.83 7.82 127.77 1.00 2.83 16 16 C 0.07 2.21 3.43 45.00 0.15 2.36 16 17 H 0.12 4.14 7.00 -2.39 -0.02 4.13 16 18 C -0.15 -2.71 5.64 31.56 0.18 -2.54 16 19 C 0.10 1.59 1.25 -10.33 -0.01 1.58 16 20 C -0.14 -1.33 8.82 71.98 0.63 -0.70 16 21 C -0.17 -2.12 8.19 71.98 0.59 -1.53 16 22 O -0.35 -8.91 10.60 -57.13 -0.61 -9.52 16 23 C 0.48 15.43 7.05 71.49 0.50 15.93 16 24 O -0.48 -19.00 17.98 21.53 0.39 -18.61 16 25 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 26 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 2.37 4.63 -2.39 -0.01 2.36 16 28 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.05 1.59 7.30 -2.39 -0.02 1.58 16 30 H 0.10 2.00 4.38 -2.39 -0.01 1.99 16 31 H 0.09 2.69 5.59 -2.39 -0.01 2.67 16 32 H 0.12 1.79 7.82 -2.39 -0.02 1.77 16 33 H 0.12 1.89 6.94 -2.39 -0.02 1.87 16 34 H 0.11 0.50 8.14 -2.38 -0.02 0.49 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.05 0.84 5.73 -2.39 -0.01 0.82 16 38 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.11 0.77 8.09 -2.39 -0.02 0.75 16 Total: -1.00 -74.21 308.42 5.72 -68.49 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.06 Total: 7.61 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 4.92 Total: 10.18 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.03 Total: -74.03 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -0.26 Total: -59.25 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.21 5.72 -68.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854608410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.894 kcal (2) G-P(sol) polarization free energy of solvation -74.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds