Wall clock time and date at job start Mon Mar 30 2020 04:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.53002 * 110.32761 * 299.21330 * 15 14 12 17 17 C 1.54486 * 110.36978 * 176.85444 * 15 14 12 18 18 C 1.54574 * 102.14981 * 256.51156 * 17 15 14 19 19 C 1.52994 * 110.44084 * 214.41391 * 18 17 15 20 20 C 1.52992 * 110.44207 * 91.88783 * 18 17 15 21 21 O 1.45844 * 104.43932 * 333.14798 * 18 17 15 22 22 C 1.34067 * 109.90235 * 30.60974 * 21 18 17 23 23 O 1.20828 * 125.09181 * 159.16918 * 22 21 18 24 24 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 25 25 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 26 26 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 27 27 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 29 29 H 1.08998 * 109.46813 * 59.29915 * 16 15 14 30 30 H 1.08998 * 109.46938 * 179.29829 * 16 15 14 31 31 H 1.09001 * 109.47121 * 299.29629 * 16 15 14 32 32 H 1.09006 * 110.86710 * 14.67234 * 17 15 14 33 33 H 1.08999 * 110.87140 * 138.34192 * 17 15 14 34 34 H 1.09005 * 109.47404 * 176.47291 * 19 18 17 35 35 H 1.09003 * 109.47168 * 296.46730 * 19 18 17 36 36 H 1.09000 * 109.47624 * 56.46858 * 19 18 17 37 37 H 1.09006 * 109.47406 * 303.52618 * 20 18 17 38 38 H 1.09005 * 109.47396 * 63.52779 * 20 18 17 39 39 H 1.09004 * 109.47589 * 183.52903 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6810 -2.3809 3.6806 17 6 1.7579 -0.1839 4.9247 18 6 3.0639 0.5280 5.3452 19 6 3.1619 0.6078 6.8699 20 6 3.1318 1.9271 4.7301 21 8 4.1265 -0.3157 4.8101 22 6 3.7083 -0.9204 3.6891 23 8 4.4309 -1.3807 2.8371 24 1 -0.3633 -1.0239 -0.0882 25 1 -0.3633 0.5883 -0.8426 26 1 -0.3633 0.4355 0.9308 27 1 2.9400 -0.1044 -4.2545 28 1 1.1495 0.5389 2.5435 29 1 2.0225 -2.9072 2.7893 30 1 2.0626 -2.8846 4.5687 31 1 0.5912 -2.3770 3.7052 32 1 0.9766 0.5412 4.6965 33 1 1.4295 -0.8803 5.6962 34 1 4.1156 1.0553 7.1499 35 1 2.3464 1.2201 7.2548 36 1 3.0934 -0.3951 7.2915 37 1 3.0422 1.8524 3.6463 38 1 2.3163 2.5358 5.1209 39 1 4.0851 2.3902 4.9847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854667369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:28 Heat of formation + Delta-G solvation = -119.888492 kcal Electronic energy + Delta-G solvation = -22134.481168 eV Core-core repulsion = 18849.434160 eV Total energy + Delta-G solvation = -3285.047008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49640 -38.72128 -37.45241 -35.13484 -33.62688 -33.41782 -31.65127 -30.30040 -27.83276 -27.12430 -25.24409 -24.01835 -22.85298 -21.51619 -20.06298 -18.79422 -17.18260 -16.86578 -16.54519 -16.09997 -15.71175 -14.85195 -14.61054 -14.32321 -14.02556 -13.71019 -13.50325 -13.01527 -12.84514 -12.66246 -12.62467 -12.39559 -12.22832 -12.10978 -12.04340 -11.86895 -11.67657 -11.36610 -11.10860 -11.09387 -10.74916 -10.53980 -10.28565 -9.97208 -9.80304 -9.15517 -8.60966 -8.55007 -8.45018 -6.03910 -4.02767 2.24764 3.19922 3.25134 3.30618 3.34610 3.57947 3.67187 4.01191 4.03680 4.30513 4.40098 4.49310 4.65146 5.02413 5.19779 5.24272 5.26958 5.38444 5.44712 5.47203 5.51004 5.62407 5.73173 5.81936 5.89690 5.97024 6.13163 6.35459 6.39892 6.51640 6.74738 6.82555 6.96695 7.17619 7.56257 7.82390 8.08605 8.56037 9.12361 9.18953 9.55556 11.09531 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026160 B = 0.005993 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.062978 B = 4671.265698 C = 4883.902087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.001 4.001 3 H 0.052 0.948 4 C -0.493 4.493 5 H 0.087 0.913 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.870 3.130 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.265 1.265 12 C 0.509 3.491 13 O -0.491 6.491 14 N -0.736 5.736 15 C 0.122 3.878 16 C -0.153 4.153 17 C -0.149 4.149 18 C 0.103 3.897 19 C -0.141 4.141 20 C -0.169 4.169 21 O -0.346 6.346 22 C 0.465 3.535 23 O -0.402 6.402 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.025 0.975 27 H 0.264 0.736 28 H 0.397 0.603 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 6.275 21.685 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.023 4.023 3 H 0.070 0.930 4 C -0.531 4.531 5 H 0.105 0.895 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.697 3.303 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.190 1.190 12 C 0.297 3.703 13 O -0.360 6.360 14 N -0.396 5.396 15 C 0.033 3.967 16 C -0.211 4.211 17 C -0.187 4.187 18 C 0.066 3.934 19 C -0.198 4.198 20 C -0.226 4.226 21 O -0.264 6.264 22 C 0.300 3.700 23 O -0.279 6.279 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.232 0.768 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.563 5.284 21.019 22.148 hybrid contribution -0.297 1.504 -0.069 1.535 sum -4.860 6.788 20.950 22.552 Atomic orbital electron populations 1.21951 0.96777 1.01394 0.98935 1.19337 0.93996 0.96841 0.92122 0.93038 1.20736 1.42908 0.96213 0.93233 0.89537 1.25022 0.94675 0.97900 0.95395 1.69882 1.45989 1.35623 1.01668 0.86980 0.78915 0.86927 0.77435 1.20173 1.21232 1.18996 1.21940 0.79417 0.85339 0.83595 1.90669 1.34421 1.25186 1.85774 1.46497 1.56120 1.32701 1.04281 1.21413 0.92093 0.96007 0.87184 1.22072 1.01523 0.93209 1.04295 1.23385 0.97787 1.00611 0.96922 1.22998 0.84568 0.90370 0.95424 1.21855 1.03474 1.03410 0.91071 1.22282 1.03706 0.94481 1.02121 1.87098 1.42350 1.57459 1.39523 1.23391 0.90908 0.76242 0.79499 1.90853 1.62807 1.40759 1.33446 0.92850 0.92733 0.95608 0.92564 0.76782 0.89006 0.91967 0.91159 0.88027 0.87992 0.91123 0.90118 0.91255 0.91386 0.90111 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.12 37.16 0.34 -2.23 16 2 C 0.00 -0.03 2.30 -92.92 -0.21 -0.24 16 3 H 0.05 1.17 5.29 -51.93 -0.27 0.90 16 4 C -0.49 -14.34 8.36 -34.44 -0.29 -14.62 16 5 H 0.09 2.86 7.61 -52.49 -0.40 2.46 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -27.99 13.96 55.43 0.77 -27.22 16 8 Si 0.87 21.22 26.99 -169.99 -4.59 16.63 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -5.87 6.82 56.52 0.39 -5.48 16 12 C 0.51 11.27 6.57 -10.99 -0.07 11.19 16 13 O -0.49 -13.01 11.59 -17.21 -0.20 -13.21 16 14 N -0.74 -11.82 5.00 -47.67 -0.24 -12.06 16 15 C 0.12 1.76 0.96 -131.88 -0.13 1.63 16 16 C -0.15 -2.18 8.39 37.16 0.31 -1.86 16 17 C -0.15 -1.33 5.54 -25.12 -0.14 -1.47 16 18 C 0.10 1.02 1.24 -89.80 -0.11 0.91 16 19 C -0.14 -0.94 8.91 37.15 0.33 -0.61 16 20 C -0.17 -1.53 8.78 37.15 0.33 -1.20 16 21 O -0.35 -5.21 10.48 -38.48 -0.40 -5.62 16 22 C 0.46 8.47 7.11 36.31 0.26 8.73 16 23 O -0.40 -9.53 15.50 -26.18 -0.41 -9.94 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.02 0.38 7.43 -51.93 -0.39 0.00 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 28 H 0.40 4.98 7.55 -40.82 -0.31 4.67 16 29 H 0.09 1.71 6.28 -51.93 -0.33 1.38 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 0.67 7.40 -51.93 -0.38 0.29 16 33 H 0.10 0.70 7.59 -51.93 -0.39 0.31 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -37.11 316.11 -5.63 -42.74 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.85 Total: 1.66 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 0.52 Total: 2.23 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.54 Total: -39.27 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.01 Total: -28.76 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.59 Total: 16.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -37.11 -5.63 -42.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854667369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.149 kcal (2) G-P(sol) polarization free energy of solvation -37.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds