Wall clock time and date at job start Mon Mar 30 2020 04:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.53002 * 110.32761 * 299.21330 * 15 14 12 17 17 C 1.54486 * 110.36978 * 176.85444 * 15 14 12 18 18 C 1.54574 * 102.14981 * 256.51156 * 17 15 14 19 19 C 1.52994 * 110.44084 * 214.41391 * 18 17 15 20 20 C 1.52992 * 110.44207 * 91.88783 * 18 17 15 21 21 O 1.45844 * 104.43932 * 333.14798 * 18 17 15 22 22 C 1.34067 * 109.90235 * 30.60974 * 21 18 17 23 23 O 1.20828 * 125.09181 * 159.16918 * 22 21 18 24 24 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 25 25 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 26 26 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 27 27 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 28 28 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 29 29 H 1.08998 * 109.46813 * 59.29915 * 16 15 14 30 30 H 1.08998 * 109.46938 * 179.29829 * 16 15 14 31 31 H 1.09001 * 109.47121 * 299.29629 * 16 15 14 32 32 H 1.09006 * 110.86710 * 14.67234 * 17 15 14 33 33 H 1.08999 * 110.87140 * 138.34192 * 17 15 14 34 34 H 1.09005 * 109.47404 * 176.47291 * 19 18 17 35 35 H 1.09003 * 109.47168 * 296.46730 * 19 18 17 36 36 H 1.09000 * 109.47624 * 56.46858 * 19 18 17 37 37 H 1.09006 * 109.47406 * 303.52618 * 20 18 17 38 38 H 1.09005 * 109.47396 * 63.52779 * 20 18 17 39 39 H 1.09004 * 109.47589 * 183.52903 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6810 -2.3809 3.6806 17 6 1.7579 -0.1839 4.9247 18 6 3.0639 0.5280 5.3452 19 6 3.1619 0.6078 6.8699 20 6 3.1318 1.9271 4.7301 21 8 4.1265 -0.3157 4.8101 22 6 3.7083 -0.9204 3.6891 23 8 4.4309 -1.3807 2.8371 24 1 -0.3633 -1.0239 -0.0882 25 1 -0.3633 0.5883 -0.8426 26 1 -0.3633 0.4355 0.9308 27 1 2.9400 -0.1044 -4.2545 28 1 1.1495 0.5389 2.5435 29 1 2.0225 -2.9072 2.7893 30 1 2.0626 -2.8846 4.5687 31 1 0.5912 -2.3770 3.7052 32 1 0.9766 0.5412 4.6965 33 1 1.4295 -0.8803 5.6962 34 1 4.1156 1.0553 7.1499 35 1 2.3464 1.2201 7.2548 36 1 3.0934 -0.3951 7.2915 37 1 3.0422 1.8524 3.6463 38 1 2.3163 2.5358 5.1209 39 1 4.0851 2.3902 4.9847 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854667369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:27 Heat of formation + Delta-G solvation = -148.264430 kcal Electronic energy + Delta-G solvation = -22135.711641 eV Core-core repulsion = 18849.434160 eV Total energy + Delta-G solvation = -3286.277481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.66714 -40.31825 -38.86184 -36.50216 -35.60512 -34.36659 -33.54752 -31.76246 -28.44399 -28.00257 -27.22155 -25.21655 -24.54463 -22.50198 -21.58543 -20.13444 -19.13397 -18.28912 -17.87431 -17.57384 -16.98381 -16.40019 -16.01888 -15.65852 -15.47306 -14.91504 -14.65597 -14.43221 -14.30840 -14.09992 -13.77176 -13.48694 -13.27432 -13.10279 -13.02182 -12.99553 -12.92796 -12.69492 -12.59331 -12.50669 -12.13983 -12.02594 -11.76452 -11.47328 -11.30503 -11.24271 -10.76263 -10.27387 -9.99116 -8.28194 -6.34115 0.90935 1.31133 1.36775 1.45893 1.90719 2.16159 2.32335 2.33868 2.87485 3.09266 3.15929 3.53474 3.76270 3.92329 4.07920 4.24141 4.40485 4.57287 4.59815 4.66615 4.71043 4.75120 4.78540 4.83432 4.86561 4.93886 4.95250 5.15257 5.19930 5.20952 5.33486 5.46925 5.52433 5.61525 5.83623 6.24593 6.48995 6.65069 6.83891 7.26975 7.58472 8.90373 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026160 B = 0.005993 C = 0.005732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.062978 B = 4671.265698 C = 4883.902087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.007 4.007 3 H 0.067 0.933 4 C -0.505 4.505 5 H 0.019 0.981 6 C 0.002 3.998 7 N -0.954 5.954 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.214 1.214 12 C 0.508 3.492 13 O -0.547 6.547 14 N -0.710 5.710 15 C 0.119 3.881 16 C -0.152 4.152 17 C -0.131 4.131 18 C 0.090 3.910 19 C -0.137 4.137 20 C -0.171 4.171 21 O -0.362 6.362 22 C 0.459 3.541 23 O -0.479 6.479 24 H 0.037 0.963 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.266 0.734 28 H 0.420 0.580 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.123 0.877 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 10.088 25.690 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.029 4.029 3 H 0.085 0.915 4 C -0.543 4.543 5 H 0.037 0.963 6 C -0.194 4.194 7 N -0.594 5.594 8 Si 0.768 3.232 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.137 1.137 12 C 0.295 3.705 13 O -0.421 6.421 14 N -0.371 5.371 15 C 0.031 3.969 16 C -0.210 4.210 17 C -0.168 4.168 18 C 0.054 3.946 19 C -0.194 4.194 20 C -0.228 4.228 21 O -0.280 6.280 22 C 0.298 3.702 23 O -0.361 6.361 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.259 0.741 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.142 0.858 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.773 9.152 25.127 27.848 hybrid contribution 0.735 0.224 -1.190 1.416 sum -7.038 9.375 23.937 26.653 Atomic orbital electron populations 1.21808 0.93094 1.01226 1.02059 1.19342 0.96735 0.96582 0.90194 0.91519 1.20915 1.43298 0.93714 0.96420 0.96271 1.26125 0.94060 1.04780 0.94460 1.70088 1.48106 1.38391 1.02829 0.85778 0.80432 0.78429 0.78575 1.20305 1.20880 1.13652 1.21673 0.78850 0.84594 0.85362 1.90682 1.36881 1.27707 1.86847 1.46015 1.55083 1.32866 1.03104 1.21665 0.89547 0.97021 0.88703 1.22063 1.03328 0.92804 1.02768 1.23550 0.98024 1.01256 0.93979 1.23619 0.83566 0.89915 0.97451 1.21931 1.04783 1.04471 0.88186 1.22380 1.05244 0.94561 1.00616 1.87080 1.45207 1.57584 1.38122 1.24130 0.92403 0.74647 0.79041 1.90813 1.64823 1.43929 1.36543 0.94372 0.92541 0.89851 0.92506 0.74071 0.94400 0.89723 0.88110 0.84066 0.84703 0.91664 0.86366 0.90868 0.93865 0.85819 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 9.12 71.98 0.66 -3.79 16 2 C -0.01 -0.31 2.30 -12.28 -0.03 -0.34 16 3 H 0.07 2.85 5.29 -2.39 -0.01 2.84 16 4 C -0.51 -30.96 8.36 25.60 0.21 -30.75 16 5 H 0.02 1.38 7.61 -2.91 -0.02 1.36 16 6 C 0.00 0.10 5.47 84.66 0.46 0.57 16 7 N -0.95 -63.14 13.96 21.45 0.30 -62.84 16 8 Si 0.95 43.55 26.99 68.60 1.85 45.40 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.21 -8.10 6.82 99.48 0.68 -7.42 16 12 C 0.51 22.70 6.57 87.66 0.58 23.27 16 13 O -0.55 -31.07 11.59 18.72 0.22 -30.85 16 14 N -0.71 -21.08 5.00 -423.11 -2.12 -23.19 16 15 C 0.12 3.17 0.96 3.56 0.00 3.18 16 16 C -0.15 -4.12 8.39 71.98 0.60 -3.52 16 17 C -0.13 -1.59 5.54 31.64 0.18 -1.41 16 18 C 0.09 1.40 1.24 -10.26 -0.01 1.39 16 19 C -0.14 -1.13 8.91 71.98 0.64 -0.49 16 20 C -0.17 -2.38 8.78 71.98 0.63 -1.75 16 21 O -0.36 -10.56 10.48 -50.18 -0.53 -11.08 16 22 C 0.46 16.98 7.11 71.44 0.51 17.48 16 23 O -0.48 -24.36 15.50 29.06 0.45 -23.91 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.08 2.03 7.43 -2.39 -0.02 2.01 16 27 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 28 H 0.42 8.35 7.55 -92.71 -0.70 7.65 16 29 H 0.04 1.47 6.28 -2.39 -0.02 1.45 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.14 0.69 7.40 -2.38 -0.02 0.68 16 33 H 0.13 0.89 7.59 -2.39 -0.02 0.87 16 34 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.07 0.58 8.12 -2.39 -0.02 0.57 16 37 H 0.04 0.82 8.08 -2.38 -0.02 0.81 16 38 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -95.66 316.11 4.93 -90.73 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.32 Total: 11.91 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 4.43 Total: 3.84 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.82 Total: -86.04 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: 0.14 Total: -65.85 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.85 Total: 45.40 kcal Total: -95.66 4.93 -90.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854667369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.533 kcal (2) G-P(sol) polarization free energy of solvation -95.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds