Wall clock time and date at job start Mon Mar 30 2020 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47091 * 2 1 4 4 C 1.50698 * 109.47119 * 119.99918 * 2 1 3 5 5 H 1.08005 * 119.99196 * 119.99831 * 4 2 1 6 6 C 1.37868 * 120.00427 * 300.00372 * 4 2 1 7 7 N 1.31514 * 120.00214 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00283 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47017 * 59.99742 * 8 6 4 10 10 H 1.48500 * 109.47453 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46957 * 299.99891 * 8 6 4 12 12 C 1.50695 * 109.46995 * 240.00643 * 2 1 3 13 13 O 1.21288 * 119.99866 * 239.99815 * 12 2 1 14 14 N 1.34778 * 120.00348 * 59.99899 * 12 2 1 15 15 C 1.46498 * 119.99888 * 179.97438 * 14 12 2 16 16 C 1.52996 * 110.33153 * 299.21678 * 15 14 12 17 17 C 1.54491 * 110.36798 * 176.85359 * 15 14 12 18 18 C 1.54568 * 102.14970 * 256.50977 * 17 15 14 19 19 C 1.53001 * 110.44507 * 214.41094 * 18 17 15 20 20 C 1.53002 * 110.43848 * 91.88908 * 18 17 15 21 21 O 1.45837 * 104.44219 * 333.15272 * 18 17 15 22 22 C 1.34064 * 109.90695 * 30.60052 * 21 18 17 23 23 O 1.20828 * 125.08954 * 159.13292 * 22 21 18 24 24 H 1.09004 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47089 * 299.99785 * 1 2 3 26 26 H 1.09005 * 109.47076 * 59.99678 * 1 2 3 27 27 H 0.96997 * 120.00431 * 180.02562 * 7 6 4 28 28 H 0.96993 * 119.99807 * 0.02562 * 14 12 2 29 29 H 1.09003 * 109.47142 * 180.78987 * 16 15 14 30 30 H 1.09003 * 109.46846 * 300.78403 * 16 15 14 31 31 H 1.08999 * 109.47703 * 60.78446 * 16 15 14 32 32 H 1.09003 * 110.86596 * 14.67480 * 17 15 14 33 33 H 1.09004 * 110.86487 * 138.34678 * 17 15 14 34 34 H 1.08994 * 109.47634 * 176.47816 * 19 18 17 35 35 H 1.08998 * 109.46540 * 296.47808 * 19 18 17 36 36 H 1.09004 * 109.46759 * 56.47182 * 19 18 17 37 37 H 1.09002 * 109.47459 * 303.52445 * 20 18 17 38 38 H 1.08994 * 109.47177 * 63.53020 * 20 18 17 39 39 H 1.09003 * 109.47086 * 183.52394 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6035 8 14 2.3213 -1.1205 4.0079 9 1 3.8063 -1.1211 4.0081 10 1 1.8259 -0.4209 5.2205 11 1 1.8258 -2.5204 4.0076 12 6 2.0323 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7067 -0.2497 -2.4546 15 6 2.1955 -0.9399 -3.6508 16 6 3.7251 -0.9338 -3.6802 17 6 1.6280 -0.2753 -4.9247 18 6 0.5225 -1.2701 -5.3459 19 6 0.4150 -1.3355 -6.8707 20 6 -0.8198 -0.8688 -4.7310 21 8 0.9645 -2.5528 -4.8110 22 6 1.6737 -2.3599 -3.6897 23 8 1.8666 -3.1946 -2.8376 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1616 3.4845 28 1 1.1493 0.5391 -2.5435 29 1 4.0732 -1.4380 -4.5818 30 1 4.0844 0.0953 -3.6778 31 1 4.1076 -1.4543 -2.8022 32 1 1.2040 0.7026 -4.6965 33 1 2.3943 -0.1970 -5.6960 34 1 -0.3241 -2.0859 -7.1510 35 1 0.1090 -0.3626 -7.2553 36 1 1.3837 -1.6044 -7.2920 37 1 -0.7198 -0.8095 -3.6472 38 1 -1.1225 0.1027 -5.1217 39 1 -1.5735 -1.6138 -4.9861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854667371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:30 Heat of formation + Delta-G solvation = -122.607669 kcal Electronic energy + Delta-G solvation = -22104.526286 eV Core-core repulsion = 18819.361366 eV Total energy + Delta-G solvation = -3285.164920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44893 -38.61976 -37.41334 -35.08531 -33.69541 -33.36740 -31.35431 -29.72419 -27.78344 -27.07574 -25.11204 -23.98097 -22.79693 -21.47130 -20.16092 -18.74722 -17.05220 -16.55553 -16.11273 -16.04779 -15.64652 -14.82942 -14.55774 -14.39168 -13.96038 -13.54033 -13.40509 -13.06302 -12.87439 -12.62423 -12.52598 -12.19959 -12.09158 -12.02557 -11.90964 -11.63532 -11.46697 -11.06266 -10.96419 -10.69886 -10.65992 -10.49821 -10.23696 -9.99164 -9.88500 -8.96160 -8.51843 -8.46591 -8.25639 -6.00434 -4.02875 2.28504 3.23881 3.39867 3.41464 3.48009 3.66714 3.77202 4.06486 4.09888 4.35254 4.50111 4.55397 4.70284 5.07412 5.24605 5.31541 5.33257 5.42957 5.50457 5.52461 5.56311 5.65916 5.77205 5.86240 5.96343 6.21377 6.41896 6.59900 6.81370 6.82605 6.94004 7.02864 7.47754 7.76126 7.85351 8.00002 8.13465 8.43151 9.06492 9.27661 9.62666 11.07249 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032696 B = 0.005332 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.168097 B = 5250.528838 C = 5515.821708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.034 3.966 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.511 3.489 13 O -0.508 6.508 14 N -0.733 5.733 15 C 0.122 3.878 16 C -0.153 4.153 17 C -0.150 4.150 18 C 0.104 3.896 19 C -0.141 4.141 20 C -0.169 4.169 21 O -0.347 6.347 22 C 0.467 3.533 23 O -0.405 6.405 24 H 0.030 0.970 25 H 0.094 0.906 26 H 0.009 0.991 27 H 0.261 0.739 28 H 0.399 0.601 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 2.941 -19.225 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.013 3.987 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.538 5.538 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.300 3.700 13 O -0.379 6.379 14 N -0.393 5.393 15 C 0.032 3.968 16 C -0.211 4.211 17 C -0.187 4.187 18 C 0.067 3.933 19 C -0.198 4.198 20 C -0.226 4.226 21 O -0.265 6.265 22 C 0.302 3.698 23 O -0.282 6.282 24 H 0.050 0.950 25 H 0.112 0.888 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.234 0.766 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.850 1.670 -18.632 18.798 hybrid contribution -0.041 0.120 0.773 0.783 sum -1.891 1.790 -17.859 18.048 Atomic orbital electron populations 1.21752 0.96700 0.99792 1.00783 1.18852 0.94025 0.96722 0.89147 0.93034 1.21116 1.30917 1.12751 0.88932 0.90756 1.24931 0.95128 0.95064 0.99079 1.69855 1.37234 1.23135 1.23586 0.86506 0.79279 0.79783 0.81579 1.20191 1.21419 1.20190 1.22134 0.79185 0.84610 0.84075 1.90618 1.36127 1.25178 1.86027 1.46436 1.56252 1.32420 1.04173 1.21400 0.97061 0.90944 0.87346 1.22074 0.91631 1.03352 1.04040 1.23387 0.98714 0.99745 0.96900 1.23002 0.94616 0.80319 0.95370 1.21855 1.03542 1.03289 0.91118 1.22282 0.95475 1.02537 1.02287 1.87085 1.66486 1.33424 1.39513 1.23384 0.76654 0.90343 0.79420 1.90828 1.53726 1.50116 1.33535 0.95044 0.88782 0.97153 0.92968 0.76577 0.92039 0.91144 0.89092 0.87970 0.88066 0.91142 0.90101 0.91308 0.91216 0.90110 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.84 2.64 -92.93 -0.25 0.59 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.38 8.37 -34.44 -0.29 -14.66 16 5 H 0.07 2.28 6.75 -52.48 -0.35 1.93 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.35 11.32 55.43 0.63 -24.72 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.51 11.68 6.57 -10.99 -0.07 11.60 16 13 O -0.51 -13.46 11.30 -17.22 -0.19 -13.65 16 14 N -0.73 -12.42 5.04 -47.67 -0.24 -12.66 16 15 C 0.12 1.82 0.96 -131.88 -0.13 1.69 16 16 C -0.15 -2.24 8.37 37.16 0.31 -1.93 16 17 C -0.15 -1.43 5.54 -25.13 -0.14 -1.56 16 18 C 0.10 1.07 1.24 -89.79 -0.11 0.96 16 19 C -0.14 -0.99 8.91 37.16 0.33 -0.66 16 20 C -0.17 -1.62 8.78 37.16 0.33 -1.30 16 21 O -0.35 -5.32 10.48 -38.48 -0.40 -5.72 16 22 C 0.47 8.63 7.11 36.31 0.26 8.88 16 23 O -0.41 -9.59 15.50 -26.18 -0.41 -10.00 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 26 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.40 5.55 7.61 -40.82 -0.31 5.24 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.72 6.32 -51.93 -0.33 1.39 16 32 H 0.10 0.76 7.40 -51.93 -0.38 0.37 16 33 H 0.10 0.75 7.59 -51.93 -0.39 0.35 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 316.12 15.07 4.76 4.76 Total: -1.00 -34.78 316.12 -6.23 -41.01 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.84 Total: 1.25 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 0.48 Total: 2.44 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.39 Total: -37.38 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -1.00 Total: -29.37 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.78 -6.23 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854667371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.596 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds