Wall clock time and date at job start Mon Mar 30 2020 04:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47091 * 2 1 4 4 C 1.50698 * 109.47119 * 119.99918 * 2 1 3 5 5 H 1.08005 * 119.99196 * 119.99831 * 4 2 1 6 6 C 1.37868 * 120.00427 * 300.00372 * 4 2 1 7 7 N 1.31514 * 120.00214 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00283 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47017 * 59.99742 * 8 6 4 10 10 H 1.48500 * 109.47453 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46957 * 299.99891 * 8 6 4 12 12 C 1.50695 * 109.46995 * 240.00643 * 2 1 3 13 13 O 1.21288 * 119.99866 * 239.99815 * 12 2 1 14 14 N 1.34778 * 120.00348 * 59.99899 * 12 2 1 15 15 C 1.46498 * 119.99888 * 179.97438 * 14 12 2 16 16 C 1.52996 * 110.33153 * 299.21678 * 15 14 12 17 17 C 1.54491 * 110.36798 * 176.85359 * 15 14 12 18 18 C 1.54568 * 102.14970 * 256.50977 * 17 15 14 19 19 C 1.53001 * 110.44507 * 214.41094 * 18 17 15 20 20 C 1.53002 * 110.43848 * 91.88908 * 18 17 15 21 21 O 1.45837 * 104.44219 * 333.15272 * 18 17 15 22 22 C 1.34064 * 109.90695 * 30.60052 * 21 18 17 23 23 O 1.20828 * 125.08954 * 159.13292 * 22 21 18 24 24 H 1.09004 * 109.47329 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47089 * 299.99785 * 1 2 3 26 26 H 1.09005 * 109.47076 * 59.99678 * 1 2 3 27 27 H 0.96997 * 120.00431 * 180.02562 * 7 6 4 28 28 H 0.96993 * 119.99807 * 0.02562 * 14 12 2 29 29 H 1.09003 * 109.47142 * 180.78987 * 16 15 14 30 30 H 1.09003 * 109.46846 * 300.78403 * 16 15 14 31 31 H 1.08999 * 109.47703 * 60.78446 * 16 15 14 32 32 H 1.09003 * 110.86596 * 14.67480 * 17 15 14 33 33 H 1.09004 * 110.86487 * 138.34678 * 17 15 14 34 34 H 1.08994 * 109.47634 * 176.47816 * 19 18 17 35 35 H 1.08998 * 109.46540 * 296.47808 * 19 18 17 36 36 H 1.09004 * 109.46759 * 56.47182 * 19 18 17 37 37 H 1.09002 * 109.47459 * 303.52445 * 20 18 17 38 38 H 1.08994 * 109.47177 * 63.53020 * 20 18 17 39 39 H 1.09003 * 109.47086 * 183.52394 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6035 8 14 2.3213 -1.1205 4.0079 9 1 3.8063 -1.1211 4.0081 10 1 1.8259 -0.4209 5.2205 11 1 1.8258 -2.5204 4.0076 12 6 2.0323 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7067 -0.2497 -2.4546 15 6 2.1955 -0.9399 -3.6508 16 6 3.7251 -0.9338 -3.6802 17 6 1.6280 -0.2753 -4.9247 18 6 0.5225 -1.2701 -5.3459 19 6 0.4150 -1.3355 -6.8707 20 6 -0.8198 -0.8688 -4.7310 21 8 0.9645 -2.5528 -4.8110 22 6 1.6737 -2.3599 -3.6897 23 8 1.8666 -3.1946 -2.8376 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1616 3.4845 28 1 1.1493 0.5391 -2.5435 29 1 4.0732 -1.4380 -4.5818 30 1 4.0844 0.0953 -3.6778 31 1 4.1076 -1.4543 -2.8022 32 1 1.2040 0.7026 -4.6965 33 1 2.3943 -0.1970 -5.6960 34 1 -0.3241 -2.0859 -7.1510 35 1 0.1090 -0.3626 -7.2553 36 1 1.3837 -1.6044 -7.2920 37 1 -0.7198 -0.8095 -3.6472 38 1 -1.1225 0.1027 -5.1217 39 1 -1.5735 -1.6138 -4.9861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854667371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:29 Heat of formation + Delta-G solvation = -146.710395 kcal Electronic energy + Delta-G solvation = -22105.571459 eV Core-core repulsion = 18819.361366 eV Total energy + Delta-G solvation = -3286.210093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.65615 -40.26710 -38.84316 -36.50700 -35.73090 -34.35063 -33.08332 -31.40396 -28.44223 -28.00396 -27.21335 -25.24075 -24.55385 -22.50201 -21.73680 -20.11423 -18.53069 -18.10247 -17.84771 -17.61498 -16.94627 -16.46135 -16.08064 -15.70011 -15.27639 -14.93289 -14.66032 -14.47943 -14.31073 -13.76251 -13.55506 -13.45499 -13.31416 -13.04971 -13.00731 -12.99159 -12.71923 -12.65803 -12.56980 -12.51006 -12.22226 -12.06942 -11.97786 -11.47150 -11.29576 -11.05967 -10.57956 -10.18037 -9.97429 -8.16533 -6.25631 0.91612 1.38155 1.40057 1.48816 1.93732 2.17070 2.31563 2.49321 2.87933 3.13223 3.16118 3.53067 3.75869 3.93152 4.08903 4.34261 4.58899 4.60484 4.66428 4.70555 4.72870 4.78447 4.83065 4.91015 4.93705 4.94624 4.99045 5.19457 5.20856 5.33465 5.47955 5.49534 5.73523 5.83779 5.91582 6.20876 6.49028 6.71521 6.84112 7.40094 7.59450 8.89018 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032696 B = 0.005332 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.168097 B = 5250.528838 C = 5515.821708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.028 3.972 3 H 0.048 0.952 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.270 1.270 11 H -0.283 1.283 12 C 0.512 3.488 13 O -0.551 6.551 14 N -0.711 5.711 15 C 0.117 3.883 16 C -0.151 4.151 17 C -0.133 4.133 18 C 0.092 3.908 19 C -0.136 4.136 20 C -0.171 4.171 21 O -0.361 6.361 22 C 0.463 3.537 23 O -0.476 6.476 24 H 0.011 0.989 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.265 0.735 28 H 0.417 0.583 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.121 0.879 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 5.306 -21.864 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.007 3.993 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.195 1.195 11 H -0.209 1.209 12 C 0.300 3.700 13 O -0.426 6.426 14 N -0.371 5.371 15 C 0.029 3.971 16 C -0.209 4.209 17 C -0.170 4.170 18 C 0.056 3.944 19 C -0.193 4.193 20 C -0.228 4.228 21 O -0.278 6.278 22 C 0.301 3.699 23 O -0.359 6.359 24 H 0.030 0.970 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.255 0.745 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.059 0.941 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.648 4.104 -21.338 21.890 hybrid contribution 0.144 -0.606 1.481 1.607 sum -2.505 3.498 -19.857 20.318 Atomic orbital electron populations 1.21553 0.95306 0.98774 1.01984 1.18784 0.95090 0.96087 0.89316 0.93401 1.21242 1.31597 1.12570 0.91374 0.93958 1.25515 0.95231 0.95758 1.01142 1.69913 1.37095 1.23380 1.24338 0.85728 0.78754 0.78574 0.79247 1.20148 1.19482 1.20859 1.21694 0.78868 0.83928 0.85502 1.90620 1.38090 1.26978 1.86949 1.46014 1.55315 1.32420 1.03303 1.21684 0.97432 0.89420 0.88592 1.22064 0.91336 1.04534 1.02999 1.23547 0.99057 1.00266 0.94144 1.23591 0.94952 0.78331 0.97486 1.21929 1.04011 1.05317 0.88063 1.22370 0.95176 1.04671 1.00564 1.87070 1.65645 1.36996 1.38122 1.24034 0.75815 0.91012 0.79050 1.90786 1.56279 1.52383 1.36413 0.97025 0.90879 0.92493 0.92541 0.74454 0.89388 0.88591 0.94098 0.84593 0.84633 0.91502 0.86516 0.90740 0.94028 0.86098 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.87 71.98 0.64 -4.83 16 2 C 0.03 1.45 2.64 -12.29 -0.03 1.42 16 3 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 4 C -0.53 -31.71 8.37 25.60 0.21 -31.49 16 5 H 0.04 2.76 6.75 -2.91 -0.02 2.74 16 6 C 0.02 1.31 5.30 84.65 0.45 1.76 16 7 N -0.91 -51.34 11.32 21.44 0.24 -51.10 16 8 Si 0.95 46.48 29.54 68.60 2.03 48.50 16 9 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 12 C 0.51 23.98 6.57 87.66 0.58 24.56 16 13 O -0.55 -30.92 11.30 18.71 0.21 -30.70 16 14 N -0.71 -23.27 5.04 -423.11 -2.13 -25.40 16 15 C 0.12 3.31 0.96 3.56 0.00 3.32 16 16 C -0.15 -4.26 8.37 71.98 0.60 -3.66 16 17 C -0.13 -1.89 5.54 31.63 0.18 -1.71 16 18 C 0.09 1.56 1.24 -10.26 -0.01 1.55 16 19 C -0.14 -1.26 8.91 71.98 0.64 -0.62 16 20 C -0.17 -2.71 8.78 71.98 0.63 -2.08 16 21 O -0.36 -10.73 10.48 -50.16 -0.53 -11.26 16 22 C 0.46 17.32 7.11 71.44 0.51 17.82 16 23 O -0.48 -23.99 15.50 29.06 0.45 -23.54 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 26 H 0.06 2.03 7.57 -2.38 -0.02 2.01 16 27 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.42 10.37 7.61 -92.71 -0.71 9.67 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.04 1.59 6.32 -2.39 -0.02 1.58 16 32 H 0.14 1.10 7.40 -2.39 -0.02 1.08 16 33 H 0.14 1.12 7.59 -2.38 -0.02 1.10 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.07 0.65 8.12 -2.38 -0.02 0.63 16 37 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 38 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -83.25 316.12 5.02 -78.24 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.35 Total: 9.24 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 4.39 Total: 6.02 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.89 Total: -76.50 kcal Atomic # 8 Polarization: -65.63 SS G_CDS: 0.14 Total: -65.50 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -83.25 5.02 -78.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854667371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.475 kcal (2) G-P(sol) polarization free energy of solvation -83.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds