Wall clock time and date at job start Mon Mar 30 2020 04:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47284 * 2 1 4 4 C 1.50696 * 109.47381 * 120.00430 * 2 1 3 5 5 H 1.08001 * 120.00204 * 116.66062 * 4 2 1 6 6 C 1.37877 * 120.00096 * 296.66204 * 4 2 1 7 7 N 1.31519 * 119.99614 * 352.44095 * 6 4 2 8 8 Si 1.86798 * 120.00104 * 172.72156 * 6 4 2 9 9 H 1.48506 * 109.46580 * 264.78557 * 8 6 4 10 10 H 1.48494 * 109.47368 * 24.78247 * 8 6 4 11 11 H 1.48502 * 109.47429 * 144.79085 * 8 6 4 12 12 C 1.50705 * 109.47195 * 240.00596 * 2 1 3 13 13 O 1.21283 * 120.00044 * 240.00003 * 12 2 1 14 14 N 1.34779 * 120.00080 * 59.99556 * 12 2 1 15 15 C 1.46495 * 120.00252 * 179.97438 * 14 12 2 16 16 C 1.53009 * 110.32352 * 60.79017 * 15 14 12 17 17 C 1.54493 * 110.37113 * 183.14731 * 15 14 12 18 18 C 1.54570 * 102.14373 * 103.49365 * 17 15 14 19 19 C 1.52998 * 110.44075 * 268.10659 * 18 17 15 20 20 C 1.53005 * 110.54134 * 145.64284 * 18 17 15 21 21 O 1.45829 * 104.44465 * 26.85102 * 18 17 15 22 22 C 1.34070 * 109.91020 * 329.39375 * 21 18 17 23 23 O 1.20823 * 125.09524 * 200.79985 * 22 21 18 24 24 H 1.09005 * 109.47634 * 57.35723 * 1 2 3 25 25 H 1.08997 * 109.47353 * 177.35988 * 1 2 3 26 26 H 1.09008 * 109.47434 * 297.35707 * 1 2 3 27 27 H 0.97000 * 119.99424 * 180.28030 * 7 6 4 28 28 H 0.97002 * 119.99834 * 0.02562 * 14 12 2 29 29 H 1.08996 * 109.47134 * 60.70291 * 16 15 14 30 30 H 1.09002 * 109.46926 * 180.69910 * 16 15 14 31 31 H 1.08995 * 109.47032 * 300.70039 * 16 15 14 32 32 H 1.08999 * 110.86383 * 221.66069 * 17 15 14 33 33 H 1.09001 * 110.86403 * 345.32660 * 17 15 14 34 34 H 1.08998 * 109.47224 * 176.47845 * 19 18 17 35 35 H 1.08998 * 109.47183 * 296.48200 * 19 18 17 36 36 H 1.09001 * 109.46530 * 56.47984 * 19 18 17 37 37 H 1.08995 * 109.46883 * 303.46263 * 20 18 17 38 38 H 1.08998 * 109.46738 * 63.46387 * 20 18 17 39 39 H 1.09000 * 109.46937 * 183.46259 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6080 -1.6190 1.1321 6 6 1.7570 -0.2007 2.4815 7 7 1.1871 0.9786 2.6002 8 14 2.2005 -1.1817 4.0080 9 1 1.0175 -1.9584 4.4583 10 1 3.3130 -2.1131 3.6920 11 1 2.6233 -0.2536 5.0875 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1194 14 7 1.7066 -0.2498 -2.4547 15 6 2.1954 -0.9399 -3.6509 16 6 1.6808 -2.3805 -3.6809 17 6 1.7577 -0.1833 -4.9248 18 6 3.0637 0.5285 -5.3452 19 6 3.1315 1.9277 -4.7300 20 6 3.1634 0.6110 -6.8698 21 8 4.1262 -0.3151 -4.8103 22 6 3.7081 -0.9201 -3.6893 23 8 4.4307 -1.3810 -2.8377 24 1 -0.3634 0.5543 -0.8654 25 1 -0.3634 -1.0265 -0.0473 26 1 -0.3634 0.4723 0.9128 27 1 0.9971 1.3390 3.4805 28 1 1.1492 0.5391 -2.5436 29 1 0.5911 -2.3766 -3.7054 30 1 2.0624 -2.8842 -4.5690 31 1 2.0223 -2.9069 -2.7897 32 1 1.4293 -0.8798 -5.6963 33 1 0.9764 0.5417 -4.6966 34 1 4.0848 2.3907 -4.9847 35 1 2.3161 2.5363 -5.1208 36 1 3.0420 1.8527 -3.6463 37 1 3.0963 -0.3912 -7.2930 38 1 2.3479 1.2233 -7.2545 39 1 4.1171 1.0596 -7.1477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854667372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:32 Heat of formation + Delta-G solvation = -123.631046 kcal Electronic energy + Delta-G solvation = -22038.140363 eV Core-core repulsion = 18752.931066 eV Total energy + Delta-G solvation = -3285.209297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.45080 -38.62739 -37.41865 -35.08324 -33.66978 -33.37253 -31.36159 -29.79935 -27.78015 -27.08001 -25.09559 -23.96110 -22.85287 -21.47992 -20.16993 -18.75264 -17.04828 -16.56656 -16.09645 -16.02411 -15.70128 -14.79390 -14.54511 -14.36939 -13.99802 -13.60768 -13.47042 -12.99715 -12.78584 -12.62071 -12.53859 -12.27698 -12.09550 -12.01845 -11.90040 -11.63195 -11.53164 -11.07124 -10.98720 -10.80402 -10.60887 -10.49981 -10.29206 -9.99514 -9.87030 -8.98665 -8.50284 -8.42186 -8.29768 -6.02933 -4.01944 2.28271 3.23493 3.36359 3.42573 3.50880 3.66295 3.76875 4.06555 4.09667 4.34915 4.50605 4.55222 4.70156 5.07214 5.24478 5.31333 5.32690 5.42810 5.50164 5.52187 5.56041 5.65978 5.77106 5.86108 5.95886 6.19239 6.41875 6.54466 6.76986 6.81054 6.88686 7.02471 7.44325 7.67695 7.84961 7.99719 8.08104 8.42879 9.07865 9.27301 9.62678 11.07253 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.005241 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.888465 B = 5341.410886 C = 5519.822597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.499 4.499 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.288 1.288 12 C 0.511 3.489 13 O -0.507 6.507 14 N -0.733 5.733 15 C 0.122 3.878 16 C -0.153 4.153 17 C -0.149 4.149 18 C 0.104 3.896 19 C -0.169 4.169 20 C -0.141 4.141 21 O -0.347 6.347 22 C 0.467 3.533 23 O -0.405 6.405 24 H 0.015 0.985 25 H 0.032 0.968 26 H 0.080 0.920 27 H 0.260 0.740 28 H 0.399 0.601 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 2.553 -19.335 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.196 1.196 11 H -0.214 1.214 12 C 0.300 3.700 13 O -0.379 6.379 14 N -0.393 5.393 15 C 0.033 3.967 16 C -0.211 4.211 17 C -0.187 4.187 18 C 0.067 3.933 19 C -0.226 4.226 20 C -0.198 4.198 21 O -0.265 6.265 22 C 0.302 3.698 23 O -0.282 6.282 24 H 0.034 0.966 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.234 0.766 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.845 1.676 -18.748 18.913 hybrid contribution -0.221 0.051 0.809 0.841 sum -2.065 1.728 -17.938 18.139 Atomic orbital electron populations 1.21676 0.96838 0.99280 1.00683 1.18859 0.93715 0.97136 0.89223 0.92762 1.21143 1.33434 1.10286 0.88919 0.90668 1.24937 0.95301 0.94818 0.99083 1.69946 1.43827 1.16227 1.23617 0.86478 0.78821 0.79978 0.82239 1.20738 1.19623 1.21356 1.22117 0.78840 0.84977 0.84044 1.90619 1.35471 1.25782 1.86011 1.46443 1.55995 1.32678 1.04181 1.21402 0.92028 0.95965 0.87338 1.22070 1.01547 0.93296 1.04163 1.23381 0.97815 1.00622 0.96903 1.23002 0.84529 0.90410 0.95383 1.22283 1.03662 0.94393 1.02246 1.21855 1.03468 1.03362 0.91117 1.87086 1.42425 1.57460 1.39523 1.23391 0.90920 0.76101 0.79425 1.90829 1.62856 1.40951 1.33551 0.96646 0.94833 0.90126 0.93042 0.76587 0.91175 0.92059 0.89068 0.88070 0.87965 0.90996 0.90096 0.91263 0.91313 0.90100 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.91 37.15 0.33 -2.47 16 2 C 0.03 0.79 2.52 -92.93 -0.23 0.56 16 3 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.50 -14.39 8.32 -34.44 -0.29 -14.67 16 5 H 0.08 2.32 6.77 -52.49 -0.36 1.96 16 6 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 7 N -0.90 -25.49 11.92 55.43 0.66 -24.83 16 8 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 C 0.51 11.65 6.57 -10.98 -0.07 11.58 16 13 O -0.51 -13.42 11.29 -17.20 -0.19 -13.62 16 14 N -0.73 -12.37 5.05 -47.66 -0.24 -12.61 16 15 C 0.12 1.82 0.96 -131.88 -0.13 1.69 16 16 C -0.15 -2.24 8.39 37.16 0.31 -1.93 16 17 C -0.15 -1.42 5.54 -25.12 -0.14 -1.55 16 18 C 0.10 1.06 1.24 -89.79 -0.11 0.95 16 19 C -0.17 -1.61 8.77 37.16 0.33 -1.28 16 20 C -0.14 -0.98 8.92 37.16 0.33 -0.65 16 21 O -0.35 -5.30 10.48 -38.49 -0.40 -5.70 16 22 C 0.47 8.60 7.11 36.32 0.26 8.86 16 23 O -0.40 -9.58 15.50 -26.17 -0.41 -9.98 16 24 H 0.01 0.27 7.64 -51.93 -0.40 -0.13 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.98 6.59 -51.92 -0.34 1.64 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.40 5.51 7.66 -40.82 -0.31 5.20 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.72 6.28 -51.93 -0.33 1.40 16 32 H 0.10 0.74 7.60 -51.93 -0.39 0.35 16 33 H 0.10 0.75 7.40 -51.93 -0.38 0.37 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 37 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -34.97 317.15 -6.20 -41.17 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.87 Total: 0.90 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 0.49 Total: 2.65 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.42 Total: -37.43 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.00 Total: -29.30 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.97 -6.20 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854667372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.463 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds