Wall clock time and date at job start Mon Mar 30 2020 04:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47284 * 2 1 4 4 C 1.50696 * 109.47381 * 120.00430 * 2 1 3 5 5 H 1.08001 * 120.00204 * 116.66062 * 4 2 1 6 6 C 1.37877 * 120.00096 * 296.66204 * 4 2 1 7 7 N 1.31519 * 119.99614 * 352.44095 * 6 4 2 8 8 Si 1.86798 * 120.00104 * 172.72156 * 6 4 2 9 9 H 1.48506 * 109.46580 * 264.78557 * 8 6 4 10 10 H 1.48494 * 109.47368 * 24.78247 * 8 6 4 11 11 H 1.48502 * 109.47429 * 144.79085 * 8 6 4 12 12 C 1.50705 * 109.47195 * 240.00596 * 2 1 3 13 13 O 1.21283 * 120.00044 * 240.00003 * 12 2 1 14 14 N 1.34779 * 120.00080 * 59.99556 * 12 2 1 15 15 C 1.46495 * 120.00252 * 179.97438 * 14 12 2 16 16 C 1.53009 * 110.32352 * 60.79017 * 15 14 12 17 17 C 1.54493 * 110.37113 * 183.14731 * 15 14 12 18 18 C 1.54570 * 102.14373 * 103.49365 * 17 15 14 19 19 C 1.52998 * 110.44075 * 268.10659 * 18 17 15 20 20 C 1.53005 * 110.54134 * 145.64284 * 18 17 15 21 21 O 1.45829 * 104.44465 * 26.85102 * 18 17 15 22 22 C 1.34070 * 109.91020 * 329.39375 * 21 18 17 23 23 O 1.20823 * 125.09524 * 200.79985 * 22 21 18 24 24 H 1.09005 * 109.47634 * 57.35723 * 1 2 3 25 25 H 1.08997 * 109.47353 * 177.35988 * 1 2 3 26 26 H 1.09008 * 109.47434 * 297.35707 * 1 2 3 27 27 H 0.97000 * 119.99424 * 180.28030 * 7 6 4 28 28 H 0.97002 * 119.99834 * 0.02562 * 14 12 2 29 29 H 1.08996 * 109.47134 * 60.70291 * 16 15 14 30 30 H 1.09002 * 109.46926 * 180.69910 * 16 15 14 31 31 H 1.08995 * 109.47032 * 300.70039 * 16 15 14 32 32 H 1.08999 * 110.86383 * 221.66069 * 17 15 14 33 33 H 1.09001 * 110.86403 * 345.32660 * 17 15 14 34 34 H 1.08998 * 109.47224 * 176.47845 * 19 18 17 35 35 H 1.08998 * 109.47183 * 296.48200 * 19 18 17 36 36 H 1.09001 * 109.46530 * 56.47984 * 19 18 17 37 37 H 1.08995 * 109.46883 * 303.46263 * 20 18 17 38 38 H 1.08998 * 109.46738 * 63.46387 * 20 18 17 39 39 H 1.09000 * 109.46937 * 183.46259 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6080 -1.6190 1.1321 6 6 1.7570 -0.2007 2.4815 7 7 1.1871 0.9786 2.6002 8 14 2.2005 -1.1817 4.0080 9 1 1.0175 -1.9584 4.4583 10 1 3.3130 -2.1131 3.6920 11 1 2.6233 -0.2536 5.0875 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1194 14 7 1.7066 -0.2498 -2.4547 15 6 2.1954 -0.9399 -3.6509 16 6 1.6808 -2.3805 -3.6809 17 6 1.7577 -0.1833 -4.9248 18 6 3.0637 0.5285 -5.3452 19 6 3.1315 1.9277 -4.7300 20 6 3.1634 0.6110 -6.8698 21 8 4.1262 -0.3151 -4.8103 22 6 3.7081 -0.9201 -3.6893 23 8 4.4307 -1.3810 -2.8377 24 1 -0.3634 0.5543 -0.8654 25 1 -0.3634 -1.0265 -0.0473 26 1 -0.3634 0.4723 0.9128 27 1 0.9971 1.3390 3.4805 28 1 1.1492 0.5391 -2.5436 29 1 0.5911 -2.3766 -3.7054 30 1 2.0624 -2.8842 -4.5690 31 1 2.0223 -2.9069 -2.7897 32 1 1.4293 -0.8798 -5.6963 33 1 0.9764 0.5417 -4.6966 34 1 4.0848 2.3907 -4.9847 35 1 2.3161 2.5363 -5.1208 36 1 3.0420 1.8527 -3.6463 37 1 3.0963 -0.3912 -7.2930 38 1 2.3479 1.2233 -7.2545 39 1 4.1171 1.0596 -7.1477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854667372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:31 Heat of formation + Delta-G solvation = -148.029790 kcal Electronic energy + Delta-G solvation = -22039.198372 eV Core-core repulsion = 18752.931066 eV Total energy + Delta-G solvation = -3286.267306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.65724 -40.27116 -38.85062 -36.49900 -35.69879 -34.35644 -33.09565 -31.45124 -28.44057 -28.00495 -27.16569 -25.20652 -24.60558 -22.50983 -21.73571 -20.11920 -18.54346 -18.07984 -17.84344 -17.60336 -16.98635 -16.43794 -16.06182 -15.64396 -15.43883 -14.85295 -14.74008 -14.32901 -14.28543 -13.83558 -13.65705 -13.43202 -13.24073 -13.07565 -12.99033 -12.93186 -12.77335 -12.68642 -12.57092 -12.51296 -12.20516 -12.08005 -11.99187 -11.47335 -11.28705 -11.07067 -10.54032 -10.19527 -9.96960 -8.19947 -6.25358 0.91234 1.37063 1.38130 1.50974 1.93705 2.16632 2.31930 2.49271 2.88050 3.12081 3.16169 3.53059 3.75578 3.92988 4.08656 4.33716 4.59444 4.60595 4.65823 4.71711 4.74596 4.78116 4.82819 4.93050 4.93689 4.94478 5.01400 5.19617 5.20246 5.33268 5.48475 5.50372 5.73172 5.83517 5.87859 6.18413 6.48506 6.71777 6.84995 7.39709 7.59498 8.88845 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031778 B = 0.005241 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.888465 B = 5341.410886 C = 5519.822597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.027 3.973 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.512 3.488 13 O -0.551 6.551 14 N -0.711 5.711 15 C 0.118 3.882 16 C -0.151 4.151 17 C -0.133 4.133 18 C 0.092 3.908 19 C -0.171 4.171 20 C -0.136 4.136 21 O -0.361 6.361 22 C 0.462 3.538 23 O -0.477 6.477 24 H 0.062 0.938 25 H 0.029 0.971 26 H 0.055 0.945 27 H 0.265 0.735 28 H 0.417 0.583 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 3.802 -21.995 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.005 3.995 3 H 0.055 0.945 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.549 5.549 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.301 3.699 13 O -0.426 6.426 14 N -0.370 5.370 15 C 0.029 3.971 16 C -0.209 4.209 17 C -0.170 4.170 18 C 0.056 3.944 19 C -0.228 4.228 20 C -0.193 4.193 21 O -0.278 6.278 22 C 0.300 3.700 23 O -0.359 6.359 24 H 0.081 0.919 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.255 0.745 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.210 2.989 -21.474 22.086 hybrid contribution 0.544 -0.266 1.524 1.639 sum -3.666 2.723 -19.950 20.466 Atomic orbital electron populations 1.21477 0.94454 0.99521 1.01542 1.18788 0.95589 0.95716 0.89359 0.94453 1.21262 1.34160 1.09907 0.91384 0.93932 1.25527 0.95199 0.95686 1.01218 1.69998 1.43816 1.16675 1.24413 0.85676 0.78479 0.78813 0.79483 1.19341 1.21076 1.20007 1.21676 0.78483 0.84312 0.85474 1.90621 1.37323 1.27723 1.86940 1.46018 1.54974 1.32754 1.03298 1.21687 0.89733 0.97075 0.88583 1.22059 1.03188 0.92683 1.02948 1.23542 0.98025 1.01241 0.94154 1.23592 0.83518 0.89780 0.97502 1.22372 1.05206 0.94730 1.00476 1.21928 1.04803 1.04530 0.88042 1.87069 1.45106 1.57536 1.38138 1.24068 0.92271 0.74626 0.79044 1.90786 1.64725 1.43967 1.36439 0.91926 0.95169 0.92583 0.92587 0.74454 0.88415 0.89554 0.94060 0.84590 0.84557 0.91413 0.86067 0.94168 0.90717 0.86498 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.87 8.91 71.98 0.64 -4.23 16 2 C 0.03 1.36 2.52 -12.29 -0.03 1.33 16 3 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.53 -31.71 8.32 25.60 0.21 -31.50 16 5 H 0.04 2.79 6.77 -2.91 -0.02 2.77 16 6 C 0.02 1.33 5.20 84.65 0.44 1.77 16 7 N -0.91 -52.05 11.92 21.45 0.26 -51.80 16 8 Si 0.95 46.50 29.54 68.60 2.03 48.52 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 11 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 12 C 0.51 23.96 6.57 87.66 0.58 24.54 16 13 O -0.55 -30.89 11.29 18.72 0.21 -30.68 16 14 N -0.71 -23.18 5.05 -423.08 -2.13 -25.31 16 15 C 0.12 3.31 0.96 3.57 0.00 3.32 16 16 C -0.15 -4.21 8.39 71.99 0.60 -3.60 16 17 C -0.13 -1.86 5.54 31.64 0.18 -1.69 16 18 C 0.09 1.56 1.24 -10.26 -0.01 1.55 16 19 C -0.17 -2.75 8.77 71.98 0.63 -2.12 16 20 C -0.14 -1.26 8.92 71.98 0.64 -0.62 16 21 O -0.36 -10.77 10.48 -50.21 -0.53 -11.30 16 22 C 0.46 17.32 7.11 71.44 0.51 17.83 16 23 O -0.48 -24.09 15.50 29.07 0.45 -23.64 16 24 H 0.06 2.07 7.64 -2.38 -0.02 2.06 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 2.72 6.59 -2.38 -0.02 2.70 16 27 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.42 10.31 7.66 -92.71 -0.71 9.60 16 29 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.60 6.28 -2.39 -0.02 1.58 16 32 H 0.14 1.10 7.60 -2.39 -0.02 1.08 16 33 H 0.14 1.08 7.40 -2.39 -0.02 1.06 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.04 0.88 8.08 -2.39 -0.02 0.87 16 37 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 38 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -84.12 317.15 5.02 -79.11 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.34 Total: 8.52 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 4.39 Total: 6.57 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -1.88 Total: -77.11 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: 0.14 Total: -65.61 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -84.12 5.02 -79.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854667372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.923 kcal (2) G-P(sol) polarization free energy of solvation -84.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds