Wall clock time and date at job start Mon Mar 30 2020 04:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00038 * 2 1 4 4 N 1.34778 * 120.00167 * 180.02562 * 2 1 3 5 5 C 1.47486 * 125.59413 * 0.02562 * 4 2 1 6 6 C 1.54323 * 107.03754 * 181.00840 * 5 4 2 7 7 C 1.55153 * 103.10236 * 22.24109 * 6 5 4 8 8 H 1.09002 * 111.00696 * 82.51784 * 7 6 5 9 9 O 1.45202 * 111.00622 * 206.33642 * 7 6 5 10 10 C 1.34232 * 116.99968 * 209.99809 * 9 7 6 11 11 O 1.20824 * 119.99753 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99677 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.46820 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46996 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.46910 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99917 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99477 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00237 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99609 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47309 * 89.99795 * 19 17 15 21 21 H 1.48494 * 109.46863 * 210.00226 * 19 17 15 22 22 H 1.48508 * 109.46888 * 329.99924 * 19 17 15 23 23 C 1.47428 * 125.64860 * 180.02562 * 4 2 1 24 24 H 1.09000 * 109.46934 * 239.99968 * 1 2 3 25 25 H 1.08991 * 109.47149 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46920 * 120.00406 * 1 2 3 27 27 H 1.09000 * 110.02886 * 61.64190 * 5 4 2 28 28 H 1.09005 * 109.96368 * 300.33047 * 5 4 2 29 29 H 1.09002 * 110.72057 * 263.78860 * 6 5 4 30 30 H 1.09003 * 110.71837 * 140.69433 * 6 5 4 31 31 H 1.08993 * 109.47608 * 300.00478 * 12 10 9 32 32 H 1.08999 * 109.47041 * 60.00751 * 12 10 9 33 33 H 1.09002 * 109.47094 * 300.00265 * 13 12 10 34 34 H 1.08998 * 109.47360 * 60.00701 * 13 12 10 35 35 H 1.09002 * 109.46606 * 300.00118 * 14 13 12 36 36 H 1.08998 * 109.46837 * 59.99960 * 14 13 12 37 37 H 0.96999 * 120.00153 * 179.97438 * 18 17 15 38 38 H 1.09000 * 110.36462 * 37.07589 * 23 4 2 39 39 H 1.08998 * 110.36847 * 274.74797 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5715 -2.5103 -0.0017 6 6 2.7282 -3.5316 0.0241 7 6 3.9081 -2.7121 0.6101 8 1 3.8587 -2.6794 1.6985 9 8 5.1835 -3.2450 0.1655 10 6 6.2280 -3.0983 0.9958 11 8 6.0812 -2.5433 2.0589 12 6 7.5833 -3.6267 0.6022 13 6 8.5889 -3.3320 1.7170 14 6 9.9651 -3.8680 1.3172 15 6 10.9558 -3.5771 2.4150 16 1 10.6357 -3.0620 3.3086 17 6 12.2705 -3.9697 2.2789 18 7 12.6598 -4.5983 1.1914 19 14 13.4983 -3.6098 3.6400 20 1 13.5190 -4.7424 4.6002 21 1 14.8508 -3.4339 3.0526 22 1 13.1010 -2.3669 4.3491 23 6 3.6480 -1.3123 -0.0001 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0276 0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.9747 -2.6487 -0.9032 28 1 0.9463 -2.6360 0.8823 29 1 2.9608 -3.8762 -0.9835 30 1 2.4845 -4.3739 0.6716 31 1 7.5217 -4.7034 0.4442 32 1 7.9088 -3.1424 -0.3185 33 1 8.6506 -2.2553 1.8754 34 1 8.2634 -3.8166 2.6375 35 1 9.9036 -4.9446 1.1586 36 1 10.2905 -3.3831 0.3968 37 1 13.5848 -4.8742 1.0955 38 1 4.1055 -0.5387 0.6167 39 1 4.0343 -1.2647 -1.0182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860943506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:56 Heat of formation + Delta-G solvation = -137.842224 kcal Electronic energy + Delta-G solvation = -19968.863571 eV Core-core repulsion = 16683.038030 eV Total energy + Delta-G solvation = -3285.825540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78543 -39.89033 -37.75669 -36.09533 -34.33970 -32.24568 -31.89534 -30.27147 -28.87424 -27.90181 -24.53658 -23.71330 -21.89316 -20.91853 -19.89587 -19.76101 -17.82429 -17.47239 -16.58472 -16.37185 -16.17747 -15.73782 -15.42113 -14.71118 -14.44289 -14.09921 -13.86560 -13.52312 -13.23995 -12.88846 -12.81063 -12.54432 -12.37092 -12.32180 -12.16068 -11.90596 -11.46844 -11.16517 -10.84562 -10.74040 -10.68445 -10.58248 -10.26380 -10.23116 -9.76185 -9.42043 -9.10887 -9.08791 -8.35420 -6.00803 -4.02737 2.24925 2.32042 2.39048 2.91514 3.33273 3.39341 3.43961 3.92836 4.06224 4.43135 4.46168 4.50031 4.61413 4.79589 4.84326 4.95361 5.03184 5.10346 5.31952 5.35437 5.38237 5.44039 5.51873 5.55912 5.57977 5.64518 5.80626 6.07519 6.49578 6.58995 6.78981 7.04772 7.07738 7.65123 7.76487 7.78740 7.91890 7.98842 8.41444 9.03968 9.61530 11.10635 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043068 B = 0.002764 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.977958 B =10128.400605 C =10467.094372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.526 3.474 3 O -0.541 6.541 4 N -0.620 5.620 5 C 0.104 3.896 6 C -0.129 4.129 7 C 0.071 3.929 8 H 0.103 0.897 9 O -0.347 6.347 10 C 0.460 3.540 11 O -0.503 6.503 12 C -0.111 4.111 13 C -0.100 4.100 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.092 3.908 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.155 1.164 -5.363 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.315 3.685 3 O -0.418 6.418 4 N -0.358 5.358 5 C -0.019 4.019 6 C -0.167 4.167 7 C 0.015 3.985 8 H 0.121 0.879 9 O -0.264 6.264 10 C 0.303 3.697 11 O -0.390 6.390 12 C -0.148 4.148 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.031 4.031 24 H 0.107 0.893 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.799 1.915 -5.118 26.371 hybrid contribution 0.663 0.080 0.753 1.007 sum -25.136 1.995 -4.364 25.590 Atomic orbital electron populations 1.21893 0.90983 1.05601 1.04254 1.20561 0.90463 0.81833 0.75618 1.90763 1.70815 1.30561 1.49669 1.48506 1.06999 1.06085 1.74168 1.22161 0.96115 0.81060 1.02569 1.22768 0.92348 0.97716 1.03850 1.23712 0.81609 0.92587 1.00611 0.87885 1.86628 1.17834 1.73292 1.48654 1.24563 0.86926 0.76088 0.82100 1.90653 1.84544 1.39827 1.23930 1.21719 0.86808 1.03015 1.03291 1.21595 0.95296 1.01606 0.95311 1.19128 0.89075 0.96356 0.97042 1.21234 0.93789 1.37283 1.03536 0.92537 1.25015 0.98498 0.95194 0.95758 1.69954 1.17136 1.39811 1.26673 0.86578 0.80519 0.78756 0.82080 1.20652 1.21218 1.19832 1.22490 0.81009 0.97192 1.02410 0.89321 0.88791 0.89328 0.90308 0.90579 0.88777 0.88818 0.87952 0.87934 0.92378 0.92408 0.96345 0.96320 0.92985 0.89460 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 9.51 36.00 0.34 -0.59 16 2 C 0.53 5.60 7.96 -10.99 -0.09 5.52 16 3 O -0.54 -8.45 17.34 5.55 0.10 -8.36 16 4 N -0.62 -5.89 3.34 -170.15 -0.57 -6.45 16 5 C 0.10 0.58 6.52 -2.81 -0.02 0.56 16 6 C -0.13 -0.85 6.68 -24.90 -0.17 -1.02 16 7 C 0.07 0.77 3.43 -24.59 -0.08 0.68 16 8 H 0.10 1.23 7.13 -51.93 -0.37 0.86 16 9 O -0.35 -4.52 10.05 -39.26 -0.39 -4.91 16 10 C 0.46 7.25 7.96 36.01 0.29 7.54 16 11 O -0.50 -9.38 15.18 -18.75 -0.28 -9.66 16 12 C -0.11 -1.78 5.81 -27.88 -0.16 -1.94 16 13 C -0.10 -2.08 4.44 -26.73 -0.12 -2.20 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.79 13.28 55.43 0.74 -26.05 16 19 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.09 1.05 6.65 -2.53 -0.02 1.04 16 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 26 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.09 1.20 8.04 -51.93 -0.42 0.78 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -34.99 333.66 -7.22 -42.22 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -6.24 Total: -4.98 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.57 Total: -3.65 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.17 Total: -32.51 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.58 Total: -22.93 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.99 -7.22 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860943506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.624 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds