Wall clock time and date at job start Mon Mar 30 2020 04:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.47390 * 2 1 4 4 C 1.34224 * 117.00258 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00013 * 179.97438 * 4 3 2 7 7 H 1.09006 * 112.85336 * 54.42444 * 6 4 3 8 8 C 1.53786 * 113.69303 * 283.15851 * 6 4 3 9 9 C 1.53788 * 87.07901 * 220.00810 * 8 6 4 10 10 C 1.53778 * 87.08267 * 25.43003 * 9 8 6 11 11 H 1.08998 * 113.69352 * 220.00920 * 10 9 8 12 12 C 1.50702 * 113.61353 * 89.11591 * 10 9 8 13 13 O 1.21281 * 120.00372 * 317.83907 * 12 10 9 14 14 N 1.34779 * 119.99766 * 138.11677 * 12 10 9 15 15 C 1.46496 * 120.00103 * 4.44565 * 14 12 10 16 16 C 1.46508 * 119.99739 * 184.44259 * 14 12 10 17 17 C 1.50703 * 109.46826 * 89.99928 * 16 14 12 18 18 H 1.07994 * 120.00198 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99742 * 179.97438 * 17 16 14 20 20 N 1.31513 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00134 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46847 * 90.00080 * 21 19 17 23 23 H 1.48494 * 109.47293 * 210.00363 * 21 19 17 24 24 H 1.48503 * 109.47213 * 330.00742 * 21 19 17 25 25 H 1.08998 * 109.47420 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47121 * 300.00468 * 1 2 3 27 27 H 1.09001 * 109.46751 * 60.00225 * 1 2 3 28 28 H 1.09000 * 109.47121 * 239.99532 * 2 1 3 29 29 H 1.09001 * 109.46751 * 119.99775 * 2 1 3 30 30 H 1.08995 * 113.60914 * 334.55381 * 8 6 4 31 31 H 1.08995 * 113.61803 * 105.37338 * 8 6 4 32 32 H 1.08998 * 113.61010 * 270.87670 * 9 8 6 33 33 H 1.09003 * 113.61251 * 139.97777 * 9 8 6 34 34 H 1.08995 * 109.47239 * 84.37028 * 15 14 12 35 35 H 1.09004 * 109.47010 * 204.37420 * 15 14 12 36 36 H 1.09001 * 109.47038 * 324.36959 * 15 14 12 37 37 H 1.09000 * 109.47022 * 210.00057 * 16 14 12 38 38 H 1.09000 * 109.47246 * 330.00222 * 16 14 12 39 39 H 0.96997 * 120.00106 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0000 7 1 3.5421 3.5524 0.8164 8 6 3.8613 3.6301 -1.3717 9 6 5.2639 4.1818 -1.0660 10 6 5.4521 2.9706 -0.1373 11 1 5.9687 3.2078 0.7927 12 6 6.0223 1.7605 -0.8314 13 8 5.6244 1.4503 -1.9343 14 7 6.9704 1.0198 -0.2241 15 6 7.3770 1.3324 1.1482 16 6 7.5944 -0.0982 -0.9363 17 6 8.8108 0.3945 -1.6771 18 1 9.0913 1.4360 -1.6225 19 6 9.5663 -0.4846 -2.4238 20 7 9.2250 -1.7530 -2.4899 21 14 11.0736 0.1261 -3.3426 22 1 12.2663 0.0172 -2.4647 23 1 11.2785 -0.6982 -4.5607 24 1 10.8742 1.5450 -3.7329 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8390 2.9352 -2.2111 31 1 3.0929 4.4001 -1.4391 32 1 5.2525 5.1369 -0.5410 33 1 5.9315 4.1791 -1.9276 34 1 6.6905 0.8558 1.8480 35 1 8.3874 0.9620 1.3211 36 1 7.3555 2.4120 1.2965 37 1 7.8907 -0.8649 -0.2205 38 1 6.8826 -0.5194 -1.6462 39 1 9.7562 -2.3714 -3.0154 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906398565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:08 Heat of formation + Delta-G solvation = -95.686659 kcal Electronic energy + Delta-G solvation = -21623.643399 eV Core-core repulsion = 18339.645862 eV Total energy + Delta-G solvation = -3283.997538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99036 -39.19654 -36.91773 -36.16180 -34.51492 -32.50060 -31.74500 -28.22400 -27.24568 -26.31189 -25.29260 -23.26765 -22.74102 -21.32680 -20.11879 -18.04971 -17.55610 -16.67628 -16.37738 -16.33686 -15.96773 -14.84856 -14.75273 -14.28408 -14.03215 -13.94496 -13.54258 -12.95803 -12.80883 -12.44460 -12.30091 -12.10008 -11.98230 -11.69980 -11.64598 -11.39674 -11.36730 -11.12931 -10.81777 -10.78337 -10.54796 -10.42543 -10.19204 -10.07669 -9.93182 -9.51037 -8.63091 -8.35725 -7.40926 -5.95762 -4.00803 2.46954 2.75525 3.33949 3.40063 3.44143 3.51665 4.04814 4.48376 4.51442 4.64539 4.79999 4.89806 4.96124 4.96372 5.09793 5.26665 5.35216 5.39857 5.47000 5.65685 5.67926 5.71711 5.79620 5.86307 5.87261 6.03353 6.09961 6.11244 6.32506 6.45047 6.62104 7.22991 7.62849 7.73717 8.00880 8.03010 8.34608 8.64704 9.00845 9.31830 9.64352 11.11936 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.005263 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.862098 B = 5318.727186 C = 5837.159639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.461 3.539 5 O -0.473 6.473 6 C -0.091 4.091 7 H 0.127 0.873 8 C -0.117 4.117 9 C -0.120 4.120 10 C -0.127 4.127 11 H 0.100 0.900 12 C 0.544 3.456 13 O -0.545 6.545 14 N -0.593 5.593 15 C 0.086 3.914 16 C 0.251 3.749 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.028 0.972 38 H 0.044 0.956 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.093 10.071 8.678 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.358 6.358 6 C -0.111 4.111 7 H 0.144 0.856 8 C -0.154 4.154 9 C -0.158 4.158 10 C -0.149 4.149 11 H 0.118 0.882 12 C 0.331 3.669 13 O -0.423 6.423 14 N -0.324 5.324 15 C -0.058 4.058 16 C 0.131 3.869 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.020 9.354 8.017 18.663 hybrid contribution 0.968 0.000 -0.256 1.002 sum -13.051 9.354 7.761 17.835 Atomic orbital electron populations 1.21785 0.92893 1.02772 1.03222 1.22981 0.94991 0.80595 1.02800 1.86456 1.24808 1.32088 1.84604 1.23508 0.80514 0.92609 0.73111 1.90777 1.59567 1.42383 1.43043 1.22466 0.95101 0.91191 1.02309 0.85562 1.22928 0.97438 0.99687 0.95344 1.22705 0.97601 0.95732 0.99744 1.22680 0.93787 0.97058 1.01331 0.88212 1.19138 0.79292 0.82903 0.85575 1.90596 1.60234 1.70605 1.20910 1.47844 1.38154 1.32759 1.13617 1.21618 1.00686 0.99451 0.84077 1.19199 0.92592 0.83098 0.91982 1.21497 1.09966 0.95277 1.29651 0.92557 1.24944 0.97979 0.94813 0.96447 1.69950 1.39460 1.02832 1.41183 0.86513 0.82801 0.78816 0.79368 1.20690 1.21140 1.19926 0.90412 0.91726 0.91558 0.91083 0.91438 0.87915 0.90522 0.89220 0.89804 0.94094 0.90896 0.92752 0.95405 0.93820 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.36 -5.27 10.22 -39.24 -0.40 -5.67 16 4 C 0.46 7.73 7.11 36.00 0.26 7.98 16 5 O -0.47 -9.93 13.28 -25.36 -0.34 -10.27 16 6 C -0.09 -1.23 4.20 -90.96 -0.38 -1.62 16 7 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 8 C -0.12 -1.54 7.18 -25.91 -0.19 -1.73 16 9 C -0.12 -1.57 7.54 -25.92 -0.20 -1.77 16 10 C -0.13 -1.99 3.78 -90.96 -0.34 -2.33 16 11 H 0.10 1.31 5.72 -51.93 -0.30 1.02 16 12 C 0.54 12.11 4.30 -10.98 -0.05 12.06 16 13 O -0.54 -14.30 13.96 -13.97 -0.20 -14.50 16 14 N -0.59 -13.78 2.86 -182.95 -0.52 -14.30 16 15 C 0.09 1.52 10.11 59.84 0.61 2.13 16 16 C 0.25 7.07 5.17 -5.19 -0.03 7.05 16 17 C -0.52 -15.53 9.39 -34.44 -0.32 -15.85 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 21 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 29 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.10 1.71 6.96 -51.93 -0.36 1.35 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 36 H 0.05 0.78 6.01 -51.93 -0.31 0.47 16 37 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 38 H 0.04 1.40 7.36 -51.93 -0.38 1.02 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -36.58 324.81 -6.93 -43.51 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.96 Total: -1.78 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.13 Total: 7.64 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.21 Total: -41.22 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.93 Total: -30.44 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.58 -6.93 -43.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906398565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.175 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds