Wall clock time and date at job start Mon Mar 30 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45197 * 109.47390 * 2 1 4 4 C 1.34224 * 117.00258 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00013 * 179.97438 * 4 3 2 7 7 H 1.09006 * 112.85336 * 54.42444 * 6 4 3 8 8 C 1.53786 * 113.69303 * 283.15851 * 6 4 3 9 9 C 1.53788 * 87.07901 * 220.00810 * 8 6 4 10 10 C 1.53778 * 87.08267 * 25.43003 * 9 8 6 11 11 H 1.08998 * 113.69352 * 220.00920 * 10 9 8 12 12 C 1.50702 * 113.61353 * 89.11591 * 10 9 8 13 13 O 1.21281 * 120.00372 * 317.83907 * 12 10 9 14 14 N 1.34779 * 119.99766 * 138.11677 * 12 10 9 15 15 C 1.46496 * 120.00103 * 4.44565 * 14 12 10 16 16 C 1.46508 * 119.99739 * 184.44259 * 14 12 10 17 17 C 1.50703 * 109.46826 * 89.99928 * 16 14 12 18 18 H 1.07994 * 120.00198 * 0.02562 * 17 16 14 19 19 C 1.37880 * 119.99742 * 179.97438 * 17 16 14 20 20 N 1.31513 * 119.99956 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00134 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46847 * 90.00080 * 21 19 17 23 23 H 1.48494 * 109.47293 * 210.00363 * 21 19 17 24 24 H 1.48503 * 109.47213 * 330.00742 * 21 19 17 25 25 H 1.08998 * 109.47420 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47121 * 300.00468 * 1 2 3 27 27 H 1.09001 * 109.46751 * 60.00225 * 1 2 3 28 28 H 1.09000 * 109.47121 * 239.99532 * 2 1 3 29 29 H 1.09001 * 109.46751 * 119.99775 * 2 1 3 30 30 H 1.08995 * 113.60914 * 334.55381 * 8 6 4 31 31 H 1.08995 * 113.61803 * 105.37338 * 8 6 4 32 32 H 1.08998 * 113.61010 * 270.87670 * 9 8 6 33 33 H 1.09003 * 113.61251 * 139.97777 * 9 8 6 34 34 H 1.08995 * 109.47239 * 84.37028 * 15 14 12 35 35 H 1.09004 * 109.47010 * 204.37420 * 15 14 12 36 36 H 1.09001 * 109.47038 * 324.36959 * 15 14 12 37 37 H 1.09000 * 109.47022 * 210.00057 * 16 14 12 38 38 H 1.09000 * 109.47246 * 330.00222 * 16 14 12 39 39 H 0.96997 * 120.00106 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0000 7 1 3.5421 3.5524 0.8164 8 6 3.8613 3.6301 -1.3717 9 6 5.2639 4.1818 -1.0660 10 6 5.4521 2.9706 -0.1373 11 1 5.9687 3.2078 0.7927 12 6 6.0223 1.7605 -0.8314 13 8 5.6244 1.4503 -1.9343 14 7 6.9704 1.0198 -0.2241 15 6 7.3770 1.3324 1.1482 16 6 7.5944 -0.0982 -0.9363 17 6 8.8108 0.3945 -1.6771 18 1 9.0913 1.4360 -1.6225 19 6 9.5663 -0.4846 -2.4238 20 7 9.2250 -1.7530 -2.4899 21 14 11.0736 0.1261 -3.3426 22 1 12.2663 0.0172 -2.4647 23 1 11.2785 -0.6982 -4.5607 24 1 10.8742 1.5450 -3.7329 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8390 2.9352 -2.2111 31 1 3.0929 4.4001 -1.4391 32 1 5.2525 5.1369 -0.5410 33 1 5.9315 4.1791 -1.9276 34 1 6.6905 0.8558 1.8480 35 1 8.3874 0.9620 1.3211 36 1 7.3555 2.4120 1.2965 37 1 7.8907 -0.8649 -0.2205 38 1 6.8826 -0.5194 -1.6462 39 1 9.7562 -2.3714 -3.0154 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906398565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:07 Heat of formation + Delta-G solvation = -120.308841 kcal Electronic energy + Delta-G solvation = -21624.711097 eV Core-core repulsion = 18339.645862 eV Total energy + Delta-G solvation = -3285.065236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.30030 -40.59946 -38.39030 -37.47840 -36.38779 -34.71673 -32.68515 -30.23831 -28.34646 -27.73015 -27.03055 -24.67824 -24.22402 -22.53098 -21.56029 -19.39705 -19.02455 -18.66786 -17.98649 -17.60794 -17.41017 -16.68913 -16.15448 -15.96078 -15.58280 -15.07741 -14.91752 -14.37703 -13.95095 -13.88838 -13.77522 -13.55268 -13.45812 -13.17631 -13.08500 -12.80165 -12.74646 -12.55613 -12.53944 -12.46857 -12.20464 -11.93075 -11.71720 -11.56846 -11.31363 -11.22343 -10.66479 -10.33786 -9.30916 -8.22886 -6.40327 1.18914 1.34327 1.38542 1.49138 1.61164 1.97764 2.31843 2.51912 3.04888 3.33283 3.52242 3.64997 3.81682 3.92766 3.94383 4.06802 4.15162 4.29779 4.41637 4.52698 4.65896 4.74140 4.81394 4.82379 4.88844 4.94457 4.96721 5.01672 5.07322 5.11284 5.22486 5.44619 5.46282 5.57360 5.89189 6.05474 6.69092 6.75222 6.91017 7.27477 7.63273 8.84181 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.005263 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.862098 B = 5318.727186 C = 5837.159639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 O -0.354 6.354 4 C 0.454 3.546 5 O -0.528 6.528 6 C -0.079 4.079 7 H 0.186 0.814 8 C -0.117 4.117 9 C -0.106 4.106 10 C -0.133 4.133 11 H 0.135 0.865 12 C 0.532 3.468 13 O -0.602 6.602 14 N -0.608 5.608 15 C 0.082 3.918 16 C 0.269 3.731 17 C -0.543 4.543 18 H 0.057 0.943 19 C 0.003 3.997 20 N -0.933 5.933 21 Si 0.976 3.024 22 H -0.261 1.261 23 H -0.281 1.281 24 H -0.269 1.269 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.146 0.854 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.009 0.991 38 H -0.014 1.014 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.454 13.502 10.289 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.271 6.271 4 C 0.298 3.702 5 O -0.417 6.417 6 C -0.098 4.098 7 H 0.203 0.797 8 C -0.154 4.154 9 C -0.144 4.144 10 C -0.154 4.154 11 H 0.153 0.847 12 C 0.322 3.678 13 O -0.484 6.484 14 N -0.338 5.338 15 C -0.060 4.060 16 C 0.147 3.853 17 C -0.581 4.581 18 H 0.075 0.925 19 C -0.196 4.196 20 N -0.573 5.573 21 Si 0.799 3.201 22 H -0.185 1.185 23 H -0.206 1.206 24 H -0.193 1.193 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.164 0.836 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.027 0.973 38 H 0.004 0.996 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.407 12.822 9.678 21.579 hybrid contribution 0.986 -1.154 -0.758 1.696 sum -13.421 11.668 8.920 19.896 Atomic orbital electron populations 1.21786 0.89380 1.04327 1.04098 1.23205 0.97689 0.79803 1.01465 1.86465 1.23815 1.32899 1.83948 1.24363 0.80764 0.93601 0.71436 1.90770 1.60751 1.44437 1.45698 1.22789 0.92982 0.89707 1.04329 0.79669 1.22876 0.99299 0.99722 0.93540 1.22836 0.96248 0.96799 0.98482 1.22712 0.95478 0.94641 1.02613 0.84750 1.20355 0.78136 0.84189 0.85162 1.90559 1.61712 1.72415 1.23693 1.47912 1.38626 1.31722 1.15549 1.21873 1.00526 1.02436 0.81164 1.18569 0.91206 0.84714 0.90809 1.21737 1.10521 0.95392 1.30451 0.92455 1.25999 1.01590 0.94840 0.97149 1.70098 1.41019 1.04304 1.41880 0.85299 0.78584 0.78224 0.77985 1.18542 1.20624 1.19335 0.88555 0.90154 0.91254 0.93749 0.91645 0.92730 0.86167 0.83559 0.92756 0.92742 0.91531 0.88318 0.97260 0.99630 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.29 71.98 0.74 -1.54 16 2 C 0.05 1.36 6.19 71.98 0.45 1.81 16 3 O -0.35 -10.11 10.22 -51.36 -0.52 -10.64 16 4 C 0.45 15.13 7.11 71.24 0.51 15.63 16 5 O -0.53 -23.27 13.28 28.29 0.38 -22.89 16 6 C -0.08 -1.89 4.20 -11.01 -0.05 -1.94 16 7 H 0.19 2.31 8.14 -2.38 -0.02 2.29 16 8 C -0.12 -2.81 7.18 31.12 0.22 -2.59 16 9 C -0.11 -2.42 7.54 31.12 0.23 -2.18 16 10 C -0.13 -3.85 3.78 -11.01 -0.04 -3.89 16 11 H 0.13 2.88 5.72 -2.39 -0.01 2.86 16 12 C 0.53 24.31 4.30 87.66 0.38 24.68 16 13 O -0.60 -33.79 13.96 15.63 0.22 -33.57 16 14 N -0.61 -29.22 2.86 -851.11 -2.43 -31.66 16 15 C 0.08 2.84 10.11 127.77 1.29 4.13 16 16 C 0.27 16.23 5.17 85.63 0.44 16.67 16 17 C -0.54 -33.34 9.39 25.60 0.24 -33.10 16 18 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 19 C 0.00 0.16 5.46 84.66 0.46 0.62 16 20 N -0.93 -59.94 13.29 21.45 0.28 -59.66 16 21 Si 0.98 46.60 29.54 68.60 2.03 48.63 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 25 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 1.37 8.13 -2.39 -0.02 1.35 16 29 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 30 H 0.05 1.86 6.96 -2.39 -0.02 1.85 16 31 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.58 8.09 -2.39 -0.02 1.56 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 2.35 8.03 -2.39 -0.02 2.34 16 36 H 0.10 2.49 6.01 -2.39 -0.01 2.48 16 37 H 0.01 0.58 8.07 -2.39 -0.02 0.56 16 38 H -0.01 -1.02 7.36 -2.39 -0.02 -1.04 16 39 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -89.26 324.81 5.86 -83.40 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.03 Total: 8.08 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 4.88 Total: 18.30 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -2.15 Total: -91.31 kcal Atomic # 8 Polarization: -67.17 SS G_CDS: 0.07 Total: -67.10 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -89.26 5.86 -83.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906398565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.907 kcal (2) G-P(sol) polarization free energy of solvation -89.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds