Wall clock time and date at job start Mon Mar 30 2020 04:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46579 * 2 1 4 4 C 1.34233 * 116.99939 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99723 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99987 * 180.02562 * 4 3 2 7 7 H 1.08999 * 112.90376 * 326.12238 * 6 4 3 8 8 C 1.53777 * 113.61277 * 194.87872 * 6 4 3 9 9 C 1.53777 * 87.17340 * 220.06216 * 8 6 4 10 10 C 1.53782 * 87.08074 * 25.38740 * 9 8 6 11 11 H 1.09001 * 113.61381 * 220.01874 * 10 9 8 12 12 C 1.50701 * 113.61126 * 89.20460 * 10 9 8 13 13 O 1.21274 * 120.00229 * 337.30624 * 12 10 9 14 14 N 1.34780 * 119.99674 * 157.30455 * 12 10 9 15 15 C 1.46496 * 119.99631 * 180.02562 * 14 12 10 16 16 H 1.09002 * 109.47392 * 35.00341 * 15 14 12 17 17 C 1.53003 * 109.47212 * 274.99922 * 15 14 12 18 18 C 1.50707 * 109.47216 * 154.99928 * 15 14 12 19 19 H 1.07998 * 119.99411 * 0.02562 * 18 15 14 20 20 C 1.37869 * 119.99861 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00685 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 119.99741 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47351 * 59.99713 * 22 20 18 24 24 H 1.48500 * 109.47449 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47318 * 300.00114 * 22 20 18 26 26 H 1.09008 * 109.46587 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47432 * 299.99893 * 1 2 3 28 28 H 1.09000 * 109.47223 * 60.00470 * 1 2 3 29 29 H 1.09000 * 109.47432 * 240.00106 * 2 1 3 30 30 H 1.09000 * 109.47223 * 119.99530 * 2 1 3 31 31 H 1.08995 * 113.61662 * 105.46655 * 8 6 4 32 32 H 1.09008 * 113.61338 * 334.64578 * 8 6 4 33 33 H 1.08997 * 113.62245 * 139.93980 * 9 8 6 34 34 H 1.09006 * 113.61247 * 270.76018 * 9 8 6 35 35 H 0.96995 * 119.99908 * 359.97438 * 14 12 10 36 36 H 1.09001 * 109.46769 * 60.00404 * 17 15 14 37 37 H 1.09003 * 109.46898 * 180.02562 * 17 15 14 38 38 H 1.08994 * 109.47053 * 300.00283 * 17 15 14 39 39 H 0.97002 * 120.00296 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5869 -0.0005 6 6 3.9205 2.9377 0.0000 7 1 3.3120 3.6486 -0.5590 8 6 5.4141 2.9867 -0.3625 9 6 5.5666 4.0559 0.7322 10 6 4.3258 3.4382 1.3983 11 1 3.6404 4.1767 1.8143 12 6 4.6492 2.3294 2.3662 13 8 5.6967 1.7259 2.2690 14 7 3.7743 2.0083 3.3399 15 6 4.0890 0.9307 4.2811 16 1 5.1599 0.9270 4.4845 17 6 3.6806 -0.4127 3.6734 18 6 3.3344 1.1506 5.5670 19 1 2.6851 2.0071 5.6723 20 6 3.4723 0.2577 6.6085 21 7 4.2626 -0.7855 6.4801 22 14 2.5364 0.5299 8.2020 23 1 1.0775 0.5351 7.9247 24 1 2.8554 -0.5623 9.1563 25 1 2.9326 1.8337 8.7924 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.6074 3.3605 -1.3679 32 1 5.9467 2.0607 -0.1455 33 1 6.4770 3.9502 1.3221 34 1 5.4104 5.0733 0.3736 35 1 2.9368 2.4912 3.4178 36 1 4.2264 -0.5717 2.7435 37 1 3.9143 -1.2144 4.3740 38 1 2.6098 -0.4090 3.4702 39 1 4.3592 -1.4139 7.2127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906459400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:13 Heat of formation + Delta-G solvation = -112.373721 kcal Electronic energy + Delta-G solvation = -21796.022092 eV Core-core repulsion = 18511.300950 eV Total energy + Delta-G solvation = -3284.721143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95212 -39.22190 -37.15125 -36.05501 -34.61446 -32.34696 -31.65243 -29.16800 -27.26494 -26.12615 -25.21094 -23.23055 -21.89706 -21.15074 -19.88142 -18.86315 -17.90574 -16.83869 -16.50395 -16.12545 -15.86365 -14.99171 -14.91072 -14.21657 -14.06969 -13.68711 -13.55489 -12.83073 -12.80841 -12.56915 -12.34019 -12.09697 -11.69340 -11.61933 -11.51012 -11.23440 -11.06774 -10.92661 -10.85207 -10.72380 -10.41304 -10.38603 -10.26304 -10.18228 -10.02590 -9.02882 -8.92945 -8.52613 -7.86949 -6.10166 -4.19850 2.39693 2.82097 3.25500 3.27112 3.31182 3.32504 4.01070 4.36915 4.42919 4.63379 4.83974 4.89029 5.00986 5.05122 5.12148 5.21772 5.36406 5.44308 5.56722 5.70951 5.75626 5.78446 5.85320 5.98484 6.03827 6.10757 6.49794 6.66520 6.86260 7.04652 7.19657 7.50480 7.58627 7.71352 7.94156 8.01910 8.17715 8.69079 8.80094 9.15717 9.47671 10.95668 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017984 B = 0.006300 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.543728 B = 4443.431659 C = 5351.952786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.461 3.539 5 O -0.482 6.482 6 C -0.095 4.095 7 H 0.125 0.875 8 C -0.117 4.117 9 C -0.117 4.117 10 C -0.122 4.122 11 H 0.101 0.899 12 C 0.510 3.490 13 O -0.535 6.535 14 N -0.706 5.706 15 C 0.267 3.733 16 H 0.047 0.953 17 C -0.144 4.144 18 C -0.534 4.534 19 H 0.060 0.940 20 C 0.067 3.933 21 N -0.883 5.883 22 Si 0.901 3.099 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.388 0.612 36 H 0.017 0.983 37 H 0.089 0.911 38 H 0.022 0.978 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 7.771 -13.482 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.302 3.698 5 O -0.367 6.367 6 C -0.114 4.114 7 H 0.143 0.857 8 C -0.155 4.155 9 C -0.155 4.155 10 C -0.144 4.144 11 H 0.119 0.881 12 C 0.293 3.707 13 O -0.412 6.412 14 N -0.354 5.354 15 C 0.166 3.834 16 H 0.065 0.935 17 C -0.203 4.203 18 C -0.573 4.573 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.220 0.780 36 H 0.036 0.964 37 H 0.107 0.893 38 H 0.041 0.959 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.604 6.794 -13.405 15.718 hybrid contribution -1.119 0.150 0.969 1.487 sum -5.722 6.944 -12.436 15.350 Atomic orbital electron populations 1.21784 0.92791 1.02845 1.03269 1.23014 0.95182 0.80384 1.02762 1.86464 1.24709 1.32353 1.84208 1.23467 0.80628 0.92539 0.73163 1.90720 1.60214 1.42484 1.43269 1.22525 0.98318 0.91637 0.98957 0.85749 1.22997 0.91943 1.01644 0.98885 1.22692 0.97779 0.97784 0.97262 1.22564 1.00420 0.98228 0.93190 0.88061 1.19749 0.84973 0.83979 0.82015 1.90660 1.24995 1.53170 1.72372 1.46513 1.20335 1.37783 1.30730 1.18712 0.97593 0.81909 0.85223 0.93478 1.22048 0.97571 1.01703 0.98971 1.21189 1.28066 1.10036 0.98005 0.92159 1.24884 0.95226 0.94837 0.98721 1.69900 1.36850 1.12823 1.32475 0.86517 0.80068 0.77865 0.82679 1.20178 1.21117 1.20168 0.90396 0.91262 0.91876 0.91673 0.90711 0.90811 0.87194 0.89546 0.89272 0.78039 0.96362 0.89275 0.95922 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.36 -5.53 10.22 -39.26 -0.40 -5.93 16 4 C 0.46 7.75 6.40 36.01 0.23 7.99 16 5 O -0.48 -9.89 15.20 -18.76 -0.29 -10.18 16 6 C -0.09 -1.26 4.22 -90.87 -0.38 -1.65 16 7 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 8 C -0.12 -1.56 7.08 -25.92 -0.18 -1.75 16 9 C -0.12 -1.46 7.43 -25.92 -0.19 -1.65 16 10 C -0.12 -1.78 4.27 -90.87 -0.39 -2.17 16 11 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 12 C 0.51 10.49 5.64 -10.98 -0.06 10.42 16 13 O -0.53 -13.14 14.81 5.56 0.08 -13.06 16 14 N -0.71 -15.31 5.07 -54.93 -0.28 -15.59 16 15 C 0.27 7.03 2.56 -69.08 -0.18 6.86 16 16 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 17 C -0.14 -3.78 9.26 37.16 0.34 -3.43 16 18 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 21 N -0.88 -25.36 11.32 55.43 0.63 -24.73 16 22 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 1.89 6.55 -51.92 -0.34 1.55 16 33 H 0.09 1.23 7.83 -51.93 -0.41 0.82 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.39 7.36 8.54 -40.82 -0.35 7.01 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -33.24 327.02 -6.94 -40.18 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.99 Total: 7.07 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.59 Total: 1.49 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.35 Total: -40.33 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.60 Total: -29.17 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.24 -6.94 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906459400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.197 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds