Wall clock time and date at job start Mon Mar 30 2020 04:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.46579 * 2 1 4 4 C 1.34233 * 116.99939 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99723 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99987 * 180.02562 * 4 3 2 7 7 H 1.08999 * 112.90376 * 326.12238 * 6 4 3 8 8 C 1.53777 * 113.61277 * 194.87872 * 6 4 3 9 9 C 1.53777 * 87.17340 * 220.06216 * 8 6 4 10 10 C 1.53782 * 87.08074 * 25.38740 * 9 8 6 11 11 H 1.09001 * 113.61381 * 220.01874 * 10 9 8 12 12 C 1.50701 * 113.61126 * 89.20460 * 10 9 8 13 13 O 1.21274 * 120.00229 * 337.30624 * 12 10 9 14 14 N 1.34780 * 119.99674 * 157.30455 * 12 10 9 15 15 C 1.46496 * 119.99631 * 180.02562 * 14 12 10 16 16 H 1.09002 * 109.47392 * 35.00341 * 15 14 12 17 17 C 1.53003 * 109.47212 * 274.99922 * 15 14 12 18 18 C 1.50707 * 109.47216 * 154.99928 * 15 14 12 19 19 H 1.07998 * 119.99411 * 0.02562 * 18 15 14 20 20 C 1.37869 * 119.99861 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00685 * 0.02562 * 20 18 15 22 22 Si 1.86802 * 119.99741 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47351 * 59.99713 * 22 20 18 24 24 H 1.48500 * 109.47449 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47318 * 300.00114 * 22 20 18 26 26 H 1.09008 * 109.46587 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47432 * 299.99893 * 1 2 3 28 28 H 1.09000 * 109.47223 * 60.00470 * 1 2 3 29 29 H 1.09000 * 109.47432 * 240.00106 * 2 1 3 30 30 H 1.09000 * 109.47223 * 119.99530 * 2 1 3 31 31 H 1.08995 * 113.61662 * 105.46655 * 8 6 4 32 32 H 1.09008 * 113.61338 * 334.64578 * 8 6 4 33 33 H 1.08997 * 113.62245 * 139.93980 * 9 8 6 34 34 H 1.09006 * 113.61247 * 270.76018 * 9 8 6 35 35 H 0.96995 * 119.99908 * 359.97438 * 14 12 10 36 36 H 1.09001 * 109.46769 * 60.00404 * 17 15 14 37 37 H 1.09003 * 109.46898 * 180.02562 * 17 15 14 38 38 H 1.08994 * 109.47053 * 300.00283 * 17 15 14 39 39 H 0.97002 * 120.00296 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5869 -0.0005 6 6 3.9205 2.9377 0.0000 7 1 3.3120 3.6486 -0.5590 8 6 5.4141 2.9867 -0.3625 9 6 5.5666 4.0559 0.7322 10 6 4.3258 3.4382 1.3983 11 1 3.6404 4.1767 1.8143 12 6 4.6492 2.3294 2.3662 13 8 5.6967 1.7259 2.2690 14 7 3.7743 2.0083 3.3399 15 6 4.0890 0.9307 4.2811 16 1 5.1599 0.9270 4.4845 17 6 3.6806 -0.4127 3.6734 18 6 3.3344 1.1506 5.5670 19 1 2.6851 2.0071 5.6723 20 6 3.4723 0.2577 6.6085 21 7 4.2626 -0.7855 6.4801 22 14 2.5364 0.5299 8.2020 23 1 1.0775 0.5351 7.9247 24 1 2.8554 -0.5623 9.1563 25 1 2.9326 1.8337 8.7924 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.6074 3.3605 -1.3679 32 1 5.9467 2.0607 -0.1455 33 1 6.4770 3.9502 1.3221 34 1 5.4104 5.0733 0.3736 35 1 2.9368 2.4912 3.4178 36 1 4.2264 -0.5717 2.7435 37 1 3.9143 -1.2144 4.3740 38 1 2.6098 -0.4090 3.4702 39 1 4.3592 -1.4139 7.2127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906459400.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:12 Heat of formation + Delta-G solvation = -135.174215 kcal Electronic energy + Delta-G solvation = -21797.010796 eV Core-core repulsion = 18511.300950 eV Total energy + Delta-G solvation = -3285.709847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.25358 -40.65794 -38.59986 -37.41624 -36.55337 -34.35004 -32.67591 -31.16134 -28.34708 -27.55720 -27.28295 -24.27967 -23.49300 -22.46315 -21.63935 -20.40926 -19.18013 -18.44829 -17.82777 -17.72405 -17.34452 -16.81490 -16.26540 -15.73600 -15.59576 -15.08683 -14.94171 -14.49928 -14.29053 -13.75522 -13.71026 -13.66244 -13.22127 -12.99969 -12.90987 -12.80538 -12.77144 -12.53825 -12.34662 -12.25104 -12.18445 -11.99030 -11.54890 -11.43931 -11.30113 -11.17096 -10.68975 -10.53556 -9.78609 -8.20307 -6.39390 1.09546 1.42588 1.45580 1.53547 1.66433 1.71236 2.32542 2.58083 3.09540 3.32906 3.49997 3.73402 3.74380 3.94562 3.99180 4.07444 4.29352 4.31198 4.52371 4.64523 4.71893 4.78561 4.83195 4.84910 4.91342 5.00752 5.02939 5.10240 5.13415 5.35135 5.45740 5.49147 5.57612 5.60593 5.85465 6.03902 6.68620 6.73808 6.92970 7.28946 7.54040 8.86208 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017984 B = 0.006300 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.543728 B = 4443.431659 C = 5351.952786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.452 3.548 5 O -0.532 6.532 6 C -0.083 4.083 7 H 0.182 0.818 8 C -0.124 4.124 9 C -0.103 4.103 10 C -0.124 4.124 11 H 0.144 0.856 12 C 0.500 3.500 13 O -0.584 6.584 14 N -0.705 5.705 15 C 0.276 3.724 16 H -0.007 1.007 17 C -0.123 4.123 18 C -0.549 4.549 19 H 0.076 0.924 20 C 0.013 3.987 21 N -0.920 5.920 22 Si 0.976 3.024 23 H -0.262 1.262 24 H -0.286 1.286 25 H -0.268 1.268 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.112 0.888 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.144 0.856 35 H 0.403 0.597 36 H -0.002 1.002 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 10.822 -14.235 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.296 3.704 5 O -0.420 6.420 6 C -0.102 4.102 7 H 0.199 0.801 8 C -0.161 4.161 9 C -0.140 4.140 10 C -0.145 4.145 11 H 0.161 0.839 12 C 0.286 3.714 13 O -0.465 6.465 14 N -0.354 5.354 15 C 0.172 3.828 16 H 0.011 0.989 17 C -0.182 4.182 18 C -0.587 4.587 19 H 0.094 0.906 20 C -0.187 4.187 21 N -0.558 5.558 22 Si 0.800 3.200 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.193 1.193 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.238 0.762 36 H 0.017 0.983 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.222 9.891 -14.180 18.737 hybrid contribution -0.259 -0.863 1.156 1.465 sum -7.481 9.028 -13.025 17.525 Atomic orbital electron populations 1.21788 0.89603 1.04282 1.04061 1.23185 0.97644 0.79850 1.01354 1.86480 1.24041 1.32850 1.83647 1.24371 0.80709 0.93659 0.71660 1.90716 1.61299 1.44486 1.45525 1.22851 0.98692 0.90359 0.98300 0.80065 1.22950 0.91689 1.00021 1.01433 1.22807 0.95411 1.00035 0.95764 1.22601 1.02977 0.96614 0.92327 0.83851 1.20904 0.83704 0.84733 0.82009 1.90640 1.27138 1.55234 1.73463 1.46288 1.21484 1.37081 1.30574 1.18250 0.94435 0.83347 0.86735 0.98910 1.21806 0.97787 1.01398 0.97189 1.21517 1.28252 1.10655 0.98240 0.90563 1.25876 0.95979 0.94334 1.02531 1.70067 1.38313 1.13816 1.33635 0.85339 0.79081 0.77829 0.77743 1.18649 1.21168 1.19284 0.88702 0.91554 0.89864 0.91278 0.94097 0.86994 0.92367 0.92207 0.83773 0.76168 0.98275 0.91568 0.94713 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 10.29 71.98 0.74 -1.95 16 2 C 0.05 1.50 6.19 71.98 0.45 1.94 16 3 O -0.35 -10.40 10.22 -51.44 -0.53 -10.93 16 4 C 0.45 14.96 6.40 71.24 0.46 15.42 16 5 O -0.53 -22.87 15.20 21.98 0.33 -22.54 16 6 C -0.08 -1.95 4.22 -10.96 -0.05 -1.99 16 7 H 0.18 2.28 8.14 -2.39 -0.02 2.26 16 8 C -0.12 -3.06 7.08 31.12 0.22 -2.84 16 9 C -0.10 -2.23 7.43 31.12 0.23 -2.00 16 10 C -0.12 -3.27 4.27 -10.96 -0.05 -3.32 16 11 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 12 C 0.50 20.92 5.64 87.66 0.49 21.42 16 13 O -0.58 -30.54 14.81 -3.01 -0.04 -30.58 16 14 N -0.71 -31.04 5.07 -446.09 -2.26 -33.30 16 15 C 0.28 15.17 2.56 44.25 0.11 15.28 16 16 H -0.01 -0.46 7.58 -2.39 -0.02 -0.47 16 17 C -0.12 -6.80 9.26 71.98 0.67 -6.14 16 18 C -0.55 -29.92 8.73 25.60 0.22 -29.70 16 19 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 20 C 0.01 0.70 5.30 84.65 0.45 1.15 16 21 N -0.92 -54.56 11.32 21.44 0.24 -54.32 16 22 Si 0.98 42.51 29.54 68.60 2.03 44.54 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 30 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 2.09 6.55 -2.38 -0.02 2.07 16 33 H 0.06 1.65 7.83 -2.39 -0.02 1.63 16 34 H 0.14 1.63 8.14 -2.38 -0.02 1.62 16 35 H 0.40 14.91 8.54 -92.71 -0.79 14.12 16 36 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 38 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -79.72 327.02 3.98 -75.74 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.26 Total: 24.11 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 3.95 Total: 7.27 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -2.02 Total: -87.62 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -0.24 Total: -64.05 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -79.72 3.98 -75.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906459400.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.432 kcal (2) G-P(sol) polarization free energy of solvation -79.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds