Wall clock time and date at job start Mon Mar 30 2020 04:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45751 * 117.94710 * 2 1 4 4 C 1.52917 * 110.49080 * 160.94827 * 3 2 1 5 5 C 1.53296 * 108.60827 * 50.76613 * 4 3 2 6 6 C 1.53073 * 108.44575 * 292.36331 * 5 4 3 7 7 H 1.09006 * 109.40284 * 288.93975 * 6 5 4 8 8 C 1.50701 * 109.40150 * 169.11625 * 6 5 4 9 9 O 1.20827 * 119.99929 * 359.82515 * 8 6 5 10 10 O 1.34231 * 120.00057 * 179.82776 * 8 6 5 11 11 C 1.45206 * 116.99882 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46810 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.33352 * 117.94454 * 180.02562 * 2 1 3 23 23 O 1.21283 * 118.25011 * 2.19546 * 22 2 1 24 24 H 1.09005 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47122 * 299.97825 * 1 2 3 26 26 H 1.08996 * 109.47487 * 59.97758 * 1 2 3 27 27 H 1.09003 * 109.29907 * 281.26158 * 3 2 1 28 28 H 1.09002 * 109.29981 * 40.63622 * 3 2 1 29 29 H 1.08994 * 109.60714 * 170.50698 * 4 3 2 30 30 H 1.08999 * 109.60609 * 290.99814 * 4 3 2 31 31 H 1.09005 * 109.59674 * 172.66987 * 5 4 3 32 32 H 1.09001 * 109.73727 * 52.14532 * 5 4 3 33 33 H 1.09000 * 109.46842 * 60.00119 * 11 10 8 34 34 H 1.09002 * 109.47120 * 299.99912 * 11 10 8 35 35 H 1.09000 * 109.47441 * 60.00339 * 12 11 10 36 36 H 1.09002 * 109.47087 * 299.99785 * 12 11 10 37 37 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 38 38 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 39 39 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5950 1.1259 0.4676 5 6 4.2475 -0.0009 -0.3415 6 6 3.5838 -1.3240 0.0481 7 1 3.8882 -1.5982 1.0582 8 6 4.0129 -2.4017 -0.9139 9 8 4.7685 -2.1376 -1.8191 10 8 3.5558 -3.6550 -0.7653 11 6 4.0107 -4.6413 -1.7290 12 6 3.3883 -5.9998 -1.4007 13 6 3.8681 -7.0392 -2.4158 14 6 3.2555 -8.3776 -2.0922 15 1 2.5909 -8.4770 -1.2467 16 6 3.5437 -9.4751 -2.8753 17 7 4.3535 -9.3542 -3.9045 18 14 2.7850 -11.1341 -2.4737 19 1 3.2496 -12.1427 -3.4597 20 1 3.1968 -11.5494 -1.1087 21 1 1.3049 -11.0292 -2.5338 22 6 2.0899 -1.1780 -0.0005 23 8 1.4158 -2.1854 -0.0419 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5135 0.8902 26 1 -0.3634 0.5141 -0.8897 27 1 2.1394 1.6999 -1.0090 28 1 1.6273 1.9717 0.6700 29 1 4.1385 2.0563 0.3036 30 1 3.6107 0.8723 1.5275 31 1 5.3129 -0.0441 -0.1148 32 1 4.1057 0.1811 -1.4068 33 1 5.0970 -4.7186 -1.6845 34 1 3.7088 -4.3363 -2.7310 35 1 2.3020 -5.9222 -1.4456 36 1 3.6898 -6.3050 -0.3987 37 1 4.9544 -7.1168 -2.3707 38 1 3.5669 -6.7342 -3.4181 39 1 4.7477 -8.4927 -4.1128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922959913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:02 Heat of formation + Delta-G solvation = -138.705025 kcal Electronic energy + Delta-G solvation = -20607.124379 eV Core-core repulsion = 17321.261425 eV Total energy + Delta-G solvation = -3285.862954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28664 -39.76799 -37.03137 -36.40267 -34.43313 -34.20406 -31.65474 -30.48563 -27.45632 -26.89118 -25.36571 -23.08122 -22.59494 -21.14681 -20.57811 -19.03692 -17.92509 -17.11443 -17.01206 -16.71394 -16.27519 -15.90461 -15.45936 -14.61260 -14.45136 -13.89223 -13.71692 -13.67991 -13.39181 -13.00983 -12.75510 -12.50717 -12.28594 -12.11134 -11.87886 -11.71839 -11.49488 -11.41558 -10.90482 -10.82675 -10.44381 -10.39141 -10.10324 -9.94413 -9.79631 -9.75741 -9.07266 -8.55516 -8.30188 -6.33929 -4.02941 1.98941 2.30710 2.68428 2.91908 3.47453 3.49894 3.68474 4.03253 4.17076 4.23841 4.33800 4.57963 4.79027 4.84606 4.87922 5.07321 5.08310 5.15851 5.28949 5.35370 5.43281 5.49690 5.55467 5.59035 5.62120 5.76185 5.97825 6.01476 6.45140 6.50959 6.76675 6.92519 7.02330 7.39380 7.50902 7.83739 7.85645 8.22866 8.48970 8.90438 9.69197 11.06896 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035809 B = 0.003338 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.729554 B = 8387.245785 C = 8940.619086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.608 5.608 3 C 0.111 3.889 4 C -0.135 4.135 5 C -0.110 4.110 6 C -0.098 4.098 7 H 0.140 0.860 8 C 0.475 3.525 9 O -0.507 6.507 10 O -0.333 6.333 11 C 0.067 3.933 12 C -0.101 4.101 13 C 0.011 3.989 14 C -0.601 4.601 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.913 5.913 18 Si 1.071 2.929 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.287 1.287 22 C 0.520 3.480 23 O -0.515 6.515 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 25.974 10.585 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.342 5.342 3 C -0.012 4.012 4 C -0.173 4.173 5 C -0.148 4.148 6 C -0.120 4.120 7 H 0.157 0.843 8 C 0.316 3.684 9 O -0.396 6.396 10 O -0.247 6.247 11 C -0.006 4.006 12 C -0.139 4.139 13 C -0.026 4.026 14 C -0.639 4.639 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.549 5.549 18 Si 0.899 3.101 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.214 1.214 22 C 0.306 3.694 23 O -0.390 6.390 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.554 23.866 9.783 26.037 hybrid contribution 0.207 1.790 0.429 1.852 sum -3.347 25.656 10.212 27.816 Atomic orbital electron populations 1.21808 0.78950 1.05148 1.01327 1.47132 1.07715 1.05716 1.73667 1.21462 0.93208 0.84496 1.02047 1.21908 0.94656 0.99970 1.00744 1.21613 1.00756 0.90468 1.01943 1.21141 0.94109 0.94765 1.01994 0.84274 1.22653 0.78062 0.83835 0.83830 1.90665 1.34024 1.82733 1.32190 1.86620 1.65933 1.18005 1.54185 1.23515 0.99294 0.87215 0.90550 1.21597 1.00689 0.90137 1.01469 1.19181 0.96196 0.93617 0.93579 1.22010 1.31506 0.94389 1.16031 0.93039 1.25895 0.95878 1.03565 0.93637 1.70784 1.29021 1.28123 1.27006 0.83516 0.75760 0.75013 0.75793 1.20771 1.21388 1.21384 1.19411 0.89275 0.83512 0.77208 1.90848 1.65132 1.35127 1.47878 0.88687 0.92022 0.92059 0.91350 0.90255 0.88825 0.90493 0.89395 0.89666 0.91604 0.91695 0.91784 0.91983 0.97186 0.97182 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.48 59.85 0.63 1.20 16 2 N -0.61 -5.71 3.21 -182.85 -0.59 -6.30 16 3 C 0.11 0.61 6.40 -4.49 -0.03 0.58 16 4 C -0.14 -0.65 6.02 -26.62 -0.16 -0.81 16 5 C -0.11 -0.90 4.77 -26.54 -0.13 -1.03 16 6 C -0.10 -1.13 2.86 -93.14 -0.27 -1.40 16 7 H 0.14 1.29 8.14 -51.93 -0.42 0.87 16 8 C 0.47 7.77 7.14 36.01 0.26 8.03 16 9 O -0.51 -9.14 15.54 -18.75 -0.29 -9.43 16 10 O -0.33 -6.35 9.18 -45.26 -0.42 -6.76 16 11 C 0.07 1.36 5.47 37.16 0.20 1.56 16 12 C -0.10 -2.31 5.53 -26.73 -0.15 -2.46 16 13 C 0.01 0.30 4.28 -27.88 -0.12 0.19 16 14 C -0.60 -17.87 9.11 -34.44 -0.31 -18.19 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 16 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 17 N -0.91 -28.81 13.65 55.43 0.76 -28.06 16 18 Si 1.07 26.04 29.90 -169.99 -5.08 20.95 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.52 6.75 7.03 -11.87 -0.08 6.66 16 23 O -0.52 -8.98 14.58 -11.69 -0.17 -9.15 16 24 H 0.09 1.02 6.59 -51.93 -0.34 0.68 16 25 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.81 7.72 -51.93 -0.40 0.41 16 33 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 34 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 38 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 39 H 0.27 8.43 7.22 -40.82 -0.29 8.14 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -36.48 324.88 -7.29 -43.77 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -6.14 Total: -4.57 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.26 Total: -5.35 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.17 Total: -34.35 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.88 Total: -25.35 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.48 -7.29 -43.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922959913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.931 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds