Wall clock time and date at job start Mon Mar 30 2020 04:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45751 * 117.94710 * 2 1 4 4 C 1.52917 * 110.49080 * 160.94827 * 3 2 1 5 5 C 1.53296 * 108.60827 * 50.76613 * 4 3 2 6 6 C 1.53073 * 108.44575 * 292.36331 * 5 4 3 7 7 H 1.09006 * 109.40284 * 288.93975 * 6 5 4 8 8 C 1.50701 * 109.40150 * 169.11625 * 6 5 4 9 9 O 1.20827 * 119.99929 * 359.82515 * 8 6 5 10 10 O 1.34231 * 120.00057 * 179.82776 * 8 6 5 11 11 C 1.45206 * 116.99882 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46810 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.33352 * 117.94454 * 180.02562 * 2 1 3 23 23 O 1.21283 * 118.25011 * 2.19546 * 22 2 1 24 24 H 1.09005 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47122 * 299.97825 * 1 2 3 26 26 H 1.08996 * 109.47487 * 59.97758 * 1 2 3 27 27 H 1.09003 * 109.29907 * 281.26158 * 3 2 1 28 28 H 1.09002 * 109.29981 * 40.63622 * 3 2 1 29 29 H 1.08994 * 109.60714 * 170.50698 * 4 3 2 30 30 H 1.08999 * 109.60609 * 290.99814 * 4 3 2 31 31 H 1.09005 * 109.59674 * 172.66987 * 5 4 3 32 32 H 1.09001 * 109.73727 * 52.14532 * 5 4 3 33 33 H 1.09000 * 109.46842 * 60.00119 * 11 10 8 34 34 H 1.09002 * 109.47120 * 299.99912 * 11 10 8 35 35 H 1.09000 * 109.47441 * 60.00339 * 12 11 10 36 36 H 1.09002 * 109.47087 * 299.99785 * 12 11 10 37 37 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 38 38 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 39 39 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5950 1.1259 0.4676 5 6 4.2475 -0.0009 -0.3415 6 6 3.5838 -1.3240 0.0481 7 1 3.8882 -1.5982 1.0582 8 6 4.0129 -2.4017 -0.9139 9 8 4.7685 -2.1376 -1.8191 10 8 3.5558 -3.6550 -0.7653 11 6 4.0107 -4.6413 -1.7290 12 6 3.3883 -5.9998 -1.4007 13 6 3.8681 -7.0392 -2.4158 14 6 3.2555 -8.3776 -2.0922 15 1 2.5909 -8.4770 -1.2467 16 6 3.5437 -9.4751 -2.8753 17 7 4.3535 -9.3542 -3.9045 18 14 2.7850 -11.1341 -2.4737 19 1 3.2496 -12.1427 -3.4597 20 1 3.1968 -11.5494 -1.1087 21 1 1.3049 -11.0292 -2.5338 22 6 2.0899 -1.1780 -0.0005 23 8 1.4158 -2.1854 -0.0419 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5135 0.8902 26 1 -0.3634 0.5141 -0.8897 27 1 2.1394 1.6999 -1.0090 28 1 1.6273 1.9717 0.6700 29 1 4.1385 2.0563 0.3036 30 1 3.6107 0.8723 1.5275 31 1 5.3129 -0.0441 -0.1148 32 1 4.1057 0.1811 -1.4068 33 1 5.0970 -4.7186 -1.6845 34 1 3.7088 -4.3363 -2.7310 35 1 2.3020 -5.9222 -1.4456 36 1 3.6898 -6.3050 -0.3987 37 1 4.9544 -7.1168 -2.3707 38 1 3.5669 -6.7342 -3.4181 39 1 4.7477 -8.4927 -4.1128 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922959913.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:01 Heat of formation + Delta-G solvation = -161.919517 kcal Electronic energy + Delta-G solvation = -20608.131035 eV Core-core repulsion = 17321.261425 eV Total energy + Delta-G solvation = -3286.869610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33816 -40.96289 -38.23824 -37.51141 -36.32031 -35.21868 -33.68993 -31.28792 -28.75356 -28.12160 -26.43073 -25.01451 -23.28484 -22.54614 -22.40228 -19.80946 -19.28521 -18.82778 -18.16365 -17.96770 -17.47641 -17.13265 -16.35075 -15.78638 -15.65802 -15.34937 -15.28560 -14.86166 -14.53540 -14.37682 -13.93865 -13.67869 -13.61326 -13.20111 -13.05939 -12.71621 -12.67882 -12.48958 -12.31067 -12.18185 -12.15120 -11.95033 -11.90242 -11.64774 -11.56515 -10.87446 -10.78082 -10.58827 -9.80182 -8.74662 -6.45502 0.78322 1.21193 1.51834 1.61001 1.68175 1.80896 1.94153 2.55195 3.11122 3.23604 3.28506 3.58765 3.73630 3.81741 3.87279 4.00776 4.11390 4.22490 4.40334 4.44292 4.56750 4.59630 4.60784 4.65099 4.77312 4.81736 4.94420 4.97608 5.02953 5.19209 5.25991 5.34317 5.35519 5.37190 5.91390 6.11722 6.23176 6.47208 6.52327 6.95071 7.36569 8.66597 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035809 B = 0.003338 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.729554 B = 8387.245785 C = 8940.619086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.600 5.600 3 C 0.100 3.900 4 C -0.125 4.125 5 C -0.107 4.107 6 C -0.092 4.092 7 H 0.164 0.836 8 C 0.468 3.532 9 O -0.527 6.527 10 O -0.345 6.345 11 C 0.077 3.923 12 C -0.087 4.087 13 C 0.013 3.987 14 C -0.623 4.623 15 H 0.053 0.947 16 C -0.039 4.039 17 N -0.936 5.936 18 Si 1.122 2.878 19 H -0.281 1.281 20 H -0.266 1.266 21 H -0.269 1.269 22 C 0.512 3.488 23 O -0.574 6.574 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.066 0.934 37 H -0.001 1.001 38 H -0.007 1.007 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 28.031 12.296 30.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.332 5.332 3 C -0.021 4.021 4 C -0.163 4.163 5 C -0.144 4.144 6 C -0.114 4.114 7 H 0.181 0.819 8 C 0.311 3.689 9 O -0.417 6.417 10 O -0.261 6.261 11 C 0.004 3.996 12 C -0.125 4.125 13 C -0.025 4.025 14 C -0.661 4.661 15 H 0.072 0.928 16 C -0.236 4.236 17 N -0.573 5.573 18 Si 0.942 3.058 19 H -0.206 1.206 20 H -0.191 1.191 21 H -0.194 1.194 22 C 0.298 3.702 23 O -0.454 6.454 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.143 0.857 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.011 0.989 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.925 26.023 11.508 28.723 hybrid contribution 0.320 1.303 -0.114 1.347 sum -3.605 27.326 11.394 29.825 Atomic orbital electron populations 1.21926 0.78351 1.03759 1.03572 1.47330 1.08409 1.06093 1.71391 1.21856 0.93789 0.82820 1.03620 1.21948 0.93966 0.99721 1.00632 1.21694 1.01470 0.89638 1.01641 1.21352 0.93733 0.94458 1.01835 0.81878 1.23665 0.77308 0.83490 0.84390 1.90646 1.34981 1.82770 1.33299 1.86622 1.66503 1.19229 1.53706 1.23132 0.99227 0.86708 0.90579 1.21308 1.00146 0.90721 1.00323 1.19093 0.95326 0.94208 0.93836 1.22442 1.31665 0.95758 1.16200 0.92826 1.27568 0.95412 1.07822 0.92793 1.70920 1.30483 1.27464 1.28389 0.82892 0.75944 0.70401 0.76590 1.20608 1.19112 1.19410 1.19675 0.89603 0.83931 0.76967 1.90826 1.66263 1.37247 1.51050 0.91897 0.89076 0.90403 0.90456 0.87033 0.85738 0.89275 0.88335 0.91278 0.91024 0.92382 0.92503 0.91506 0.98315 0.98883 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.48 127.77 1.34 2.32 16 2 N -0.60 -10.11 3.21 -851.61 -2.73 -12.84 16 3 C 0.10 0.72 6.40 86.49 0.55 1.28 16 4 C -0.13 -0.70 6.02 30.67 0.18 -0.51 16 5 C -0.11 -1.50 4.77 30.72 0.15 -1.35 16 6 C -0.09 -2.03 2.86 -12.43 -0.04 -2.06 16 7 H 0.16 2.73 8.14 -2.38 -0.02 2.71 16 8 C 0.47 15.42 7.14 71.24 0.51 15.93 16 9 O -0.53 -19.16 15.54 21.96 0.34 -18.82 16 10 O -0.35 -13.48 9.18 -45.69 -0.42 -13.89 16 11 C 0.08 3.21 5.47 71.98 0.39 3.61 16 12 C -0.09 -4.09 5.53 30.59 0.17 -3.92 16 13 C 0.01 0.70 4.28 29.85 0.13 0.82 16 14 C -0.62 -37.57 9.11 25.60 0.23 -37.34 16 15 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 16 C -0.04 -2.34 5.46 84.65 0.46 -1.87 16 17 N -0.94 -60.07 13.65 21.45 0.29 -59.78 16 18 Si 1.12 51.88 29.90 68.60 2.05 53.93 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 C 0.51 13.02 7.03 87.71 0.62 13.63 16 23 O -0.57 -20.66 14.58 13.45 0.20 -20.46 16 24 H 0.06 1.38 6.59 -2.38 -0.02 1.37 16 25 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.11 0.19 8.10 -2.39 -0.02 0.17 16 29 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.09 0.36 8.12 -2.39 -0.02 0.34 16 31 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.21 7.72 -2.39 -0.02 1.19 16 33 H 0.07 2.87 8.13 -2.39 -0.02 2.85 16 34 H 0.06 2.46 8.13 -2.39 -0.02 2.44 16 35 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.07 3.03 8.14 -2.39 -0.02 3.02 16 37 H 0.00 -0.08 8.01 -2.39 -0.02 -0.10 16 38 H -0.01 -0.42 8.01 -2.38 -0.02 -0.44 16 39 H 0.26 16.59 7.22 -92.71 -0.67 15.92 16 Total: -1.00 -81.93 324.88 5.55 -76.38 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.12 Total: 4.96 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 4.70 Total: -9.48 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -2.44 Total: -72.61 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: 0.12 Total: -53.18 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.05 Total: 53.93 kcal Total: -81.93 5.55 -76.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922959913.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.536 kcal (2) G-P(sol) polarization free energy of solvation -81.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds