Wall clock time and date at job start Mon Mar 30 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00351 * 2 1 4 4 C 1.50698 * 109.47038 * 180.02562 * 3 2 1 5 5 C 1.39022 * 126.77042 * 270.13126 * 4 3 2 6 6 C 1.41492 * 126.02001 * 0.03415 * 5 4 3 7 7 H 1.07993 * 119.99882 * 0.25633 * 6 5 4 8 8 C 1.39735 * 119.99423 * 180.24682 * 6 5 4 9 9 N 1.30983 * 120.00584 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99565 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47247 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47142 * 120.00274 * 10 8 6 13 13 H 1.48497 * 109.47441 * 240.00200 * 10 8 6 14 14 N 1.34842 * 107.95469 * 180.26872 * 5 4 3 15 15 N 1.28666 * 109.63877 * 359.76747 * 14 5 4 16 16 N 1.35015 * 126.77470 * 90.00330 * 4 3 2 17 17 C 1.46505 * 126.49193 * 359.97438 * 16 4 3 18 18 C 1.52997 * 109.47212 * 269.71403 * 17 16 4 19 19 H 1.09008 * 109.47017 * 54.99771 * 18 17 16 20 20 C 1.53001 * 109.47242 * 295.00240 * 18 17 16 21 21 C 1.52994 * 109.47404 * 174.99693 * 18 17 16 22 22 O 1.42900 * 109.47359 * 185.00081 * 21 18 17 23 23 C 1.42902 * 113.99965 * 180.02562 * 22 21 18 24 24 H 1.09005 * 109.46611 * 300.00167 * 1 2 3 25 25 H 1.08997 * 109.46714 * 59.99528 * 1 2 3 26 26 H 1.08998 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47325 * 60.00062 * 3 2 1 28 28 H 1.09002 * 109.46937 * 300.00419 * 3 2 1 29 29 H 0.96997 * 120.00030 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.47068 * 29.71463 * 17 16 4 31 31 H 1.09001 * 109.47372 * 149.71551 * 17 16 4 32 32 H 1.08996 * 109.47271 * 180.02562 * 20 18 17 33 33 H 1.09008 * 109.46731 * 299.99706 * 20 18 17 34 34 H 1.08998 * 109.47430 * 59.99652 * 20 18 17 35 35 H 1.09001 * 109.47698 * 305.00111 * 21 18 17 36 36 H 1.09009 * 109.47010 * 65.00116 * 21 18 17 37 37 H 1.09003 * 109.47336 * 179.97438 * 23 22 21 38 38 H 1.09005 * 109.47006 * 299.99433 * 23 22 21 39 39 H 1.09001 * 109.47778 * 59.99963 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.3424 1.1178 1.1126 6 6 3.9254 1.1469 2.4644 7 1 2.8752 1.2248 2.7039 8 6 4.8724 1.0746 3.4893 9 7 6.1461 0.9805 3.1988 10 14 4.3218 1.1123 5.2739 11 1 2.8420 1.2215 5.3332 12 1 4.7529 -0.1369 5.9515 13 1 4.9326 2.2814 5.9559 14 7 5.6152 1.0240 0.6772 15 7 5.6332 1.0245 -0.6093 16 7 4.3179 1.1227 -1.0824 17 6 3.8968 1.1558 -2.4853 18 6 3.6436 -0.2711 -2.9756 19 1 2.9248 -0.7593 -2.3174 20 6 4.9578 -1.0545 -2.9659 21 6 3.0851 -0.2297 -4.3994 22 8 2.7396 -1.5527 -4.8143 23 6 2.2057 -1.6260 -6.1378 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.6888 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 6.8034 0.9299 3.9104 30 1 2.9805 1.7392 -2.5759 31 1 4.6802 1.6138 -3.0891 32 1 4.7775 -2.0710 -3.3156 33 1 5.6766 -0.5663 -3.6241 34 1 5.3557 -1.0841 -1.9516 35 1 2.1971 0.4020 -4.4231 36 1 3.8387 0.1775 -5.0736 37 1 1.9694 -2.6628 -6.3774 38 1 1.2995 -1.0232 -6.1979 39 1 2.9413 -1.2481 -6.8479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958540649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:35 Heat of formation + Delta-G solvation = -7.287182 kcal Electronic energy + Delta-G solvation = -21267.324048 eV Core-core repulsion = 18019.452550 eV Total energy + Delta-G solvation = -3247.871498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.07165 -38.19419 -37.08803 -35.38303 -33.31099 -31.62287 -30.11314 -27.41625 -27.18408 -26.42741 -25.51978 -24.70266 -24.14415 -20.67580 -20.24404 -18.99585 -17.31489 -16.32526 -16.01534 -15.91265 -15.53548 -15.24016 -15.05047 -14.65943 -14.22209 -14.04462 -13.82574 -13.06347 -12.61615 -12.36981 -12.27159 -12.15759 -11.83018 -11.57812 -11.19721 -11.09721 -11.05287 -10.93470 -10.85254 -10.57955 -10.50172 -10.23235 -9.73191 -9.71535 -9.29490 -9.19495 -8.84860 -8.46959 -7.45134 -6.38604 -4.17777 2.66569 3.15351 3.21877 3.26048 3.47252 3.89017 4.13945 4.25970 4.63819 4.90470 5.01516 5.16001 5.20384 5.27394 5.36926 5.43434 5.50218 5.52245 5.58511 5.59139 5.64272 5.75615 5.90290 5.94871 5.95853 6.00395 6.15068 6.32348 6.52304 6.72786 6.88814 7.11134 7.13658 7.40268 7.50347 7.72139 8.15821 8.43501 8.80676 9.07315 10.18975 10.57664 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.005232 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.003374 B = 5350.058156 C = 6105.672596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.168 3.832 4 C -0.131 4.131 5 C 0.171 3.829 6 C -0.443 4.443 7 H 0.082 0.918 8 C 0.073 3.927 9 N -0.771 5.771 10 Si 0.908 3.092 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.276 1.276 14 N -0.230 5.230 15 N -0.111 5.111 16 N -0.367 5.367 17 C 0.147 3.853 18 C -0.107 4.107 19 H 0.091 0.909 20 C -0.138 4.138 21 C 0.072 3.928 22 O -0.386 6.386 23 C 0.032 3.968 24 H 0.037 0.963 25 H 0.031 0.969 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.273 0.727 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 -0.502 -12.411 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.091 3.909 4 C -0.260 4.260 5 C 0.042 3.958 6 C -0.478 4.478 7 H 0.100 0.900 8 C -0.147 4.147 9 N -0.397 5.397 10 Si 0.733 3.267 11 H -0.187 1.187 12 H -0.201 1.201 13 H -0.202 1.202 14 N -0.103 5.103 15 N -0.089 5.089 16 N -0.165 5.165 17 C 0.023 3.977 18 C -0.127 4.127 19 H 0.109 0.891 20 C -0.195 4.195 21 C -0.005 4.005 22 O -0.304 6.304 23 C -0.065 4.065 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.792 -0.941 -12.590 14.836 hybrid contribution -1.669 0.499 0.692 1.875 sum -9.462 -0.442 -11.897 15.207 Atomic orbital electron populations 1.22632 0.82772 1.01929 0.99165 1.88117 1.17986 1.29027 1.95129 1.20236 0.87556 0.84022 0.99111 1.20856 0.91741 1.25657 0.87734 1.18968 0.85966 0.97550 0.93278 1.18615 0.94250 1.47358 0.87600 0.90032 1.25811 0.94578 0.93412 1.00872 1.70023 1.00999 1.34791 1.33877 0.86272 0.79743 0.78243 0.82431 1.18737 1.20147 1.20202 1.75139 1.19941 1.15751 0.99513 1.81460 0.97068 1.23097 1.07248 1.49266 1.06906 1.55910 1.04396 1.21238 1.00231 0.96036 0.80203 1.21519 0.99617 0.96698 0.94821 0.89094 1.21697 0.95358 0.99449 1.02984 1.22480 0.98253 0.84121 0.95692 1.87918 1.83365 1.28121 1.31014 1.22716 0.97198 1.02439 0.84129 0.94398 0.95081 0.90392 0.91768 0.94842 0.91684 0.90465 0.89708 0.92546 0.93177 0.91440 0.93441 0.93199 0.89810 0.94280 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.38 -7.53 10.69 -35.23 -0.38 -7.90 16 3 C 0.17 3.30 5.99 36.00 0.22 3.52 16 4 C -0.13 -3.13 6.74 -80.90 -0.55 -3.68 16 5 C 0.17 4.82 6.72 -85.01 -0.57 4.25 16 6 C -0.44 -12.27 9.11 -37.78 -0.34 -12.61 16 7 H 0.08 2.12 7.31 -52.49 -0.38 1.74 16 8 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 9 N -0.77 -21.92 11.92 55.54 0.66 -21.26 16 10 Si 0.91 19.75 29.56 -169.99 -5.02 14.72 16 11 H -0.26 -5.56 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 13 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 14 N -0.23 -6.74 10.55 32.05 0.34 -6.40 16 15 N -0.11 -2.90 12.84 60.35 0.77 -2.12 16 16 N -0.37 -8.19 3.23 -56.17 -0.18 -8.37 16 17 C 0.15 2.42 5.69 -4.04 -0.02 2.40 16 18 C -0.11 -1.67 2.83 -90.62 -0.26 -1.93 16 19 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 20 C -0.14 -2.32 8.95 37.16 0.33 -1.98 16 21 C 0.07 0.89 5.32 37.15 0.20 1.08 16 22 O -0.39 -5.15 10.24 -35.23 -0.36 -5.51 16 23 C 0.03 0.29 11.01 101.05 1.11 1.41 16 24 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.24 7.57 -51.93 -0.39 0.85 16 28 H 0.03 0.56 7.19 -51.93 -0.37 0.18 16 29 H 0.27 7.08 8.30 -40.82 -0.34 6.74 16 30 H 0.08 1.09 7.16 -51.93 -0.37 0.72 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.91 7.82 -51.93 -0.41 0.50 16 33 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.07 1.38 6.96 -51.93 -0.36 1.02 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -33.09 331.09 -4.12 -37.20 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.07 Total: -1.22 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 1.13 Total: -4.12 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 1.59 Total: -38.16 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.74 Total: -13.42 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.09 -4.12 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.918 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds