Wall clock time and date at job start Mon Mar 30 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00351 * 2 1 4 4 C 1.50698 * 109.47038 * 180.02562 * 3 2 1 5 5 C 1.39022 * 126.77042 * 270.13126 * 4 3 2 6 6 C 1.41492 * 126.02001 * 0.03415 * 5 4 3 7 7 H 1.07993 * 119.99882 * 0.25633 * 6 5 4 8 8 C 1.39735 * 119.99423 * 180.24682 * 6 5 4 9 9 N 1.30983 * 120.00584 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99565 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47247 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47142 * 120.00274 * 10 8 6 13 13 H 1.48497 * 109.47441 * 240.00200 * 10 8 6 14 14 N 1.34842 * 107.95469 * 180.26872 * 5 4 3 15 15 N 1.28666 * 109.63877 * 359.76747 * 14 5 4 16 16 N 1.35015 * 126.77470 * 90.00330 * 4 3 2 17 17 C 1.46505 * 126.49193 * 359.97438 * 16 4 3 18 18 C 1.52997 * 109.47212 * 269.71403 * 17 16 4 19 19 H 1.09008 * 109.47017 * 54.99771 * 18 17 16 20 20 C 1.53001 * 109.47242 * 295.00240 * 18 17 16 21 21 C 1.52994 * 109.47404 * 174.99693 * 18 17 16 22 22 O 1.42900 * 109.47359 * 185.00081 * 21 18 17 23 23 C 1.42902 * 113.99965 * 180.02562 * 22 21 18 24 24 H 1.09005 * 109.46611 * 300.00167 * 1 2 3 25 25 H 1.08997 * 109.46714 * 59.99528 * 1 2 3 26 26 H 1.08998 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47325 * 60.00062 * 3 2 1 28 28 H 1.09002 * 109.46937 * 300.00419 * 3 2 1 29 29 H 0.96997 * 120.00030 * 180.02562 * 9 8 6 30 30 H 1.09002 * 109.47068 * 29.71463 * 17 16 4 31 31 H 1.09001 * 109.47372 * 149.71551 * 17 16 4 32 32 H 1.08996 * 109.47271 * 180.02562 * 20 18 17 33 33 H 1.09008 * 109.46731 * 299.99706 * 20 18 17 34 34 H 1.08998 * 109.47430 * 59.99652 * 20 18 17 35 35 H 1.09001 * 109.47698 * 305.00111 * 21 18 17 36 36 H 1.09009 * 109.47010 * 65.00116 * 21 18 17 37 37 H 1.09003 * 109.47336 * 179.97438 * 23 22 21 38 38 H 1.09005 * 109.47006 * 299.99433 * 23 22 21 39 39 H 1.09001 * 109.47778 * 59.99963 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.3424 1.1178 1.1126 6 6 3.9254 1.1469 2.4644 7 1 2.8752 1.2248 2.7039 8 6 4.8724 1.0746 3.4893 9 7 6.1461 0.9805 3.1988 10 14 4.3218 1.1123 5.2739 11 1 2.8420 1.2215 5.3332 12 1 4.7529 -0.1369 5.9515 13 1 4.9326 2.2814 5.9559 14 7 5.6152 1.0240 0.6772 15 7 5.6332 1.0245 -0.6093 16 7 4.3179 1.1227 -1.0824 17 6 3.8968 1.1558 -2.4853 18 6 3.6436 -0.2711 -2.9756 19 1 2.9248 -0.7593 -2.3174 20 6 4.9578 -1.0545 -2.9659 21 6 3.0851 -0.2297 -4.3994 22 8 2.7396 -1.5527 -4.8143 23 6 2.2057 -1.6260 -6.1378 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.6888 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 6.8034 0.9299 3.9104 30 1 2.9805 1.7392 -2.5759 31 1 4.6802 1.6138 -3.0891 32 1 4.7775 -2.0710 -3.3156 33 1 5.6766 -0.5663 -3.6241 34 1 5.3557 -1.0841 -1.9516 35 1 2.1971 0.4020 -4.4231 36 1 3.8387 0.1775 -5.0736 37 1 1.9694 -2.6628 -6.3774 38 1 1.2995 -1.0232 -6.1979 39 1 2.9413 -1.2481 -6.8479 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958540649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:35 Heat of formation + Delta-G solvation = -31.883381 kcal Electronic energy + Delta-G solvation = -21268.390619 eV Core-core repulsion = 18019.452550 eV Total energy + Delta-G solvation = -3248.938069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.95064 -39.20650 -38.54061 -36.75467 -35.20964 -33.31042 -31.92108 -28.91578 -28.23477 -27.78458 -26.94838 -25.91421 -25.87111 -22.38890 -21.85523 -20.63832 -19.13723 -17.50124 -17.36629 -17.00847 -16.93311 -16.85288 -16.34154 -16.16018 -15.66809 -15.43659 -15.23562 -14.70038 -14.03747 -13.81633 -13.67271 -13.41016 -13.08598 -12.90067 -12.81840 -12.66329 -12.51636 -12.32801 -12.22340 -12.05332 -11.93481 -11.70633 -11.60082 -11.19254 -10.87169 -10.57836 -10.47988 -10.32024 -9.43511 -8.33023 -6.22252 0.84485 1.43291 1.44259 1.59828 1.92392 2.29420 2.33368 2.87064 3.18932 3.59097 3.66204 3.88110 4.01247 4.13401 4.18487 4.21515 4.33493 4.46696 4.50440 4.57364 4.59966 4.60506 4.67136 4.67894 4.78038 4.88566 4.89969 4.95358 4.96162 5.15182 5.27196 5.30404 5.48928 5.57363 6.25942 6.33200 6.38963 6.45545 6.84520 7.06349 8.24187 8.66346 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024470 B = 0.005232 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.003374 B = 5350.058156 C = 6105.672596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.172 3.828 4 C -0.107 4.107 5 C 0.124 3.876 6 C -0.476 4.476 7 H 0.089 0.911 8 C 0.022 3.978 9 N -0.822 5.822 10 Si 0.987 3.013 11 H -0.250 1.250 12 H -0.274 1.274 13 H -0.269 1.269 14 N -0.284 5.284 15 N -0.143 5.143 16 N -0.347 5.347 17 C 0.132 3.868 18 C -0.097 4.097 19 H 0.062 0.938 20 C -0.132 4.132 21 C 0.079 3.921 22 O -0.417 6.417 23 C 0.026 3.974 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.274 0.726 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 0.121 -14.230 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.094 3.906 4 C -0.241 4.241 5 C -0.008 4.008 6 C -0.512 4.512 7 H 0.107 0.893 8 C -0.193 4.193 9 N -0.450 5.450 10 Si 0.808 3.192 11 H -0.174 1.174 12 H -0.200 1.200 13 H -0.195 1.195 14 N -0.154 5.154 15 N -0.119 5.119 16 N -0.143 5.143 17 C 0.011 3.989 18 C -0.117 4.117 19 H 0.081 0.919 20 C -0.190 4.190 21 C 0.002 3.998 22 O -0.336 6.336 23 C -0.070 4.070 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.738 -0.322 -14.485 18.034 hybrid contribution -0.930 0.255 0.964 1.364 sum -11.668 -0.067 -13.521 17.859 Atomic orbital electron populations 1.22909 0.79589 1.03498 1.00998 1.88031 1.21350 1.28578 1.95492 1.20300 0.84494 0.84678 1.01147 1.21642 0.94063 1.21173 0.87181 1.19560 0.86632 0.99599 0.94973 1.18942 0.94827 1.49078 0.88329 0.89332 1.26781 0.94335 0.92489 1.05656 1.70174 1.02427 1.37032 1.35354 0.85087 0.79784 0.78239 0.76060 1.17361 1.19976 1.19452 1.75077 1.21377 1.18159 1.00836 1.81328 0.98753 1.25343 1.06481 1.49720 1.05853 1.52237 1.06523 1.21828 1.02549 0.97495 0.77070 1.21360 0.98090 0.95195 0.97027 0.91911 1.21628 0.96561 1.00367 1.00424 1.22388 0.99721 0.84466 0.93190 1.87869 1.83922 1.28606 1.33225 1.22924 0.98046 1.03552 0.82447 0.93434 0.92263 0.89081 0.91621 0.90790 0.91581 0.86824 0.87574 0.92262 0.91563 0.95981 0.90991 0.91175 0.88981 0.92790 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.42 -15.43 10.69 -148.98 -1.59 -17.02 16 3 C 0.17 6.34 5.99 71.24 0.43 6.76 16 4 C -0.11 -5.14 6.74 42.26 0.28 -4.86 16 5 C 0.12 7.22 6.72 39.67 0.27 7.49 16 6 C -0.48 -27.23 9.11 23.43 0.21 -27.01 16 7 H 0.09 4.70 7.31 -2.91 -0.02 4.68 16 8 C 0.02 1.21 5.49 85.18 0.47 1.67 16 9 N -0.82 -49.24 11.92 21.79 0.26 -48.98 16 10 Si 0.99 41.60 29.56 68.60 2.03 43.62 16 11 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 14 N -0.28 -17.49 10.55 -52.51 -0.55 -18.05 16 15 N -0.14 -7.70 12.84 37.02 0.48 -7.22 16 16 N -0.35 -15.38 3.23 -331.62 -1.07 -16.45 16 17 C 0.13 4.00 5.69 86.38 0.49 4.49 16 18 C -0.10 -2.84 2.83 -10.80 -0.03 -2.87 16 19 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 20 C -0.13 -4.43 8.95 71.98 0.64 -3.79 16 21 C 0.08 1.66 5.32 71.98 0.38 2.04 16 22 O -0.42 -9.93 10.24 -148.98 -1.53 -11.45 16 23 C 0.03 0.39 11.01 113.37 1.25 1.64 16 24 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 2.41 7.57 -2.39 -0.02 2.39 16 28 H 0.07 2.12 7.19 -2.39 -0.02 2.10 16 29 H 0.27 15.04 8.30 -92.71 -0.77 14.28 16 30 H 0.11 2.67 7.16 -2.39 -0.02 2.65 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.06 1.90 7.82 -2.39 -0.02 1.89 16 33 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.02 0.91 6.96 -2.39 -0.02 0.90 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -77.95 331.09 4.69 -73.26 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.03 Total: 14.83 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 5.64 Total: -12.53 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -0.89 Total: -90.70 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -3.12 Total: -28.47 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -77.95 4.69 -73.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958540649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.374 kcal (2) G-P(sol) polarization free energy of solvation -77.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds